ggKbase home page

SCNpilot_expt_1000_bf_scaffold_3580

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3580_1
Sphingomonas sp. SKA58, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..382)
DNA (381bp) protein (127aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1NHM6_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EAT10355.1}; TaxID=314266 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. (strain SKA58).;"
SCNpilot_expt_1000_bf_scaffold_3580_2
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1185..2642)
DNA (1458bp) protein (486aa)
hypothetical protein n=1 Tax=Sphingomonas wittichii RepID=UPI0003150759 rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABQ67848.1}; Flags: Precursor;; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCNpilot_expt_1000_bf_scaffold_3580_3
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2647..5007)
DNA (2361bp) protein (787aa)
TonB-dependent receptor n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S4P5_9SPHN
TonB-dependent receptor
TonB-dependent receptor {ECO:0000313|EMBL:AGH50746.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCNpilot_expt_1000_bf_scaffold_3580_4
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5520..6428
DNA (909bp) protein (303aa)
Thioredoxin n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0J1G2_9SPHN rbh
Thioredoxin {ECO:0000313|EMBL:KHS47688.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
thioredoxin; K05838 putative thioredoxin rbh
SCNpilot_expt_1000_bf_scaffold_3580_5
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6443..7051
DNA (609bp) protein (203aa)
Peptidase S16, lon-like n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IGE8_9SPHN rbh
ATP-dependent protease {ECO:0000313|EMBL:KHK89439.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
peptidase S16, lon-like; K07157 rbh
SCNpilot_expt_1000_bf_scaffold_3580_6
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7067..8125)
DNA (1059bp) protein (353aa)
Beta-lactamase {ECO:0000256|RuleBase:RU361140, ECO:0000256|SAAS:SAAS00063099}; EC=3.5.2.6 {ECO:0000256|RuleBase:RU361140, ECO:0000256|SAAS:SAAS00063099};; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
beta-lactamase (EC:3.5.2.6)
Beta-lactamase class A n=1 Tax=Novosphingobium sp. AP12 RepID=J2GAY8_9SPHN rbh
SCNpilot_expt_1000_bf_scaffold_3580_7
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8451..9848
DNA (1398bp) protein (466aa)
Carboxylic ester hydrolase; EC=3.1.1.-;; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
carboxylesterase (EC:3.1.1.1); K03929 para-nitrobenzyl esterase [EC:3.1.1.-]
Carboxylesterase n=1 Tax=Sphingomonas sp. LH128 RepID=J8VXZ6_9SPHN rbh
SCNpilot_expt_1000_bf_scaffold_3580_8
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9888..11024)
DNA (1137bp) protein (379aa)
ATP phosphoribosyltransferase regulatory subunit n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9C9P7_9SPHN rbh
ATP phosphoribosyltransferase regulatory subunit {ECO:0000313|EMBL:EIZ80190.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
ATP phosphoribosyltransferase; K02502 ATP phosphoribosyltransferase regulatory subunit rbh
SCNpilot_expt_1000_bf_scaffold_3580_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11089..12672)
DNA (1584bp) protein (528aa)
D-3-phosphoglycerate dehydrogenase {ECO:0000313|EMBL:GAO53740.1}; EC=1.1.1.95 {ECO:0000313|EMBL:GAO53740.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
D-3-phosphoglycerate dehydrogenase (EC:1.1.1.95); K00058 D-3-phosphoglycerate dehydrogenase [EC:1.1.1.95]
3-phosphoglycerate dehydrogenase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B3A46D
SCNpilot_expt_1000_bf_scaffold_3580_10
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12902..13858)
DNA (957bp) protein (319aa)
phosphoserine aminotransferase (EC:2.6.1.52); K00831 phosphoserine aminotransferase [EC:2.6.1.52]
Phosphoserine transaminase {ECO:0000256|SAAS:SAAS00182444}; EC=2.6.1.52 {ECO:0000256|SAAS:SAAS00182444};; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
Phosphoserine aminotransferase apoenzyme n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G4V8_NOVAD
SCNpilot_expt_1000_bf_scaffold_3580_11
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13965..15185)
DNA (1221bp) protein (407aa)
Cytochrome P450 n=1 Tax=Novosphingobium sp. AP12 RepID=J2GNJ2_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:KHK90931.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
CYP107B; cytochrome P450 107B1
SCNpilot_expt_1000_bf_scaffold_3580_12
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15310..16170
DNA (861bp) protein (287aa)
Gluconolactonase, putative n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GUU0_SPHAL rbh
gluconolactonase rbh
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
SCNpilot_expt_1000_bf_scaffold_3580_13
BJP_IG2102_Porphyrobacter_62_18, Porphyrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16195..16473)
DNA (279bp) protein (93aa)
20S proteasome, A and B subunits n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G4L5_NOVAD
20S proteasome subunits A/B; K07395 putative proteasome-type protease
Tax=BJP_IG2102_Porphyrobacter_62_18
SCNpilot_expt_1000_bf_scaffold_3580_14
unknown

Not on your lists

16730..16948
DNA (219bp) protein (73aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3580_15
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17009..17821)
DNA (813bp) protein (271aa)
Transglutaminase-like protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G4L4_NOVAD
Transglutaminase-like superfamily protein {ECO:0000313|EMBL:AKH44266.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
transglutaminase-like protein
SCNpilot_expt_1000_bf_scaffold_3580_16
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17821..18765)
DNA (945bp) protein (315aa)
Putative uncharacterized protein n=2 Tax=Novosphingobium RepID=F6IN24_9SPHN rbh
hypothetical protein rbh
A alpha-helical domain with a conserved ER moti {ECO:0000313|EMBL:KHK90928.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
SCNpilot_expt_1000_bf_scaffold_3580_17
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18932..20362)
DNA (1431bp) protein (477aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G4L2_NOVAD rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABD27211.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_expt_1000_bf_scaffold_3580_18
Sphingobium sp. ba1, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20551..21228
DNA (678bp) protein (226aa)
hypothetical protein n=1 Tax=Sphingobium yanoikuyae RepID=UPI000262BBF0
Uncharacterized protein {ECO:0000313|EMBL:KFL45750.1}; TaxID=1522072 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. ba1.;"
carboxymuconolactone decarboxylase
SCNpilot_expt_1000_bf_scaffold_3580_19
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21225..22013
DNA (789bp) protein (263aa)
Enoyl-CoA hydratase {ECO:0000313|EMBL:KHK89425.1}; EC=4.2.1.17 {ECO:0000313|EMBL:KHK89425.1};; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
enoyl-CoA hydratase/isomerase; K08299 carnitinyl-CoA dehydratase [EC:4.2.1.-]
Enoyl-CoA hydratase/carnithine racemase n=1 Tax=Novosphingobium sp. AP12 RepID=J2GHE8_9SPHN rbh
SCNpilot_expt_1000_bf_scaffold_3580_20
Frankia sp. EAN1pec, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22010..22774
DNA (765bp) protein (255aa)
Enoyl-CoA hydratase/isomerase n=1 Tax=Frankia sp. (strain EAN1pec) RepID=A8LD94_FRASN
enoyl-CoA hydratase/isomerase
Enoyl-CoA hydratase/isomerase {ECO:0000313|EMBL:ABW13968.1}; TaxID=298653 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EAN1pec).;"
SCNpilot_expt_1000_bf_scaffold_3580_21
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22760..23806)
DNA (1047bp) protein (349aa)
Putative Luciferase-like monooxygenase n=1 Tax=uncultured marine microorganism HF4000_005H07 RepID=B3T0E3_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:KHK93452.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
luciferase-like protein
SCNpilot_expt_1000_bf_scaffold_3580_22
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23849..24610)
DNA (762bp) protein (254aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EAF8_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:KHK93453.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_3580_23
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24735..26558)
DNA (1824bp) protein (608aa)
sdhA; succinate dehydrogenase flavoprotein subunit (EC:1.3.5.1); K00239 succinate dehydrogenase flavoprotein subunit [EC:1.3.99.1] rbh
Succinate dehydrogenase flavoprotein subunit {ECO:0000256|RuleBase:RU362051}; EC=1.3.5.1 {ECO:0000256|RuleBase:RU362051};; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
Succinate dehydrogenase subunit A n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G7I7_NOVAD rbh
SCNpilot_expt_1000_bf_scaffold_3580_24
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26560..26808)
DNA (249bp) protein (83aa)
succinate dehydrogenase hydrophobic membrane anchor protein (EC:1.3.99.1); K00242 succinate dehydrogenase membrane anchor subunit
Succinate dehydrogenase hydrophobic membrane anchor protein n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EHN4_9SPHN
Succinate dehydrogenase hydrophobic membrane anchor protein {ECO:0000313|EMBL:EHJ59194.1}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium pentaromativorans US6-1.;"
SCNpilot_expt_1000_bf_scaffold_3580_25
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26966..27418)
DNA (453bp) protein (151aa)
succinate dehydrogenase subunit C (EC:1.3.5.1); K00241 succinate dehydrogenase cytochrome b556 subunit
Succinate dehydrogenase subunit C n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G7I9_NOVAD
Succinate dehydrogenase cytochrome b-556 subunit {ECO:0000313|EMBL:GAO55661.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
SCNpilot_expt_1000_bf_scaffold_3580_26
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27784..28485
DNA (702bp) protein (234aa)
Beta-lactamase-like protein n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EHN2_9SPHN
Beta-lactamase-like protein {ECO:0000313|EMBL:EHJ59192.1}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium pentaromativorans US6-1.;"
beta-lactamase-like protein
SCNpilot_expt_1000_bf_scaffold_3580_27
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28482..29441
DNA (960bp) protein (320aa)
50S ribosomal protein L20 (EC:2.1.1.-); K02687 ribosomal protein L11 methyltransferase [EC:2.1.1.-]
[LSU ribosomal protein L11P]-lysine N-methyltransferase {ECO:0000313|EMBL:ABD26182.1}; EC=2.1.1.- {ECO:0000313|EMBL:ABD26182.1};; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
[LSU ribosomal protein L11P]-lysine N-methyltransferase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G7J1_NOVAD
SCNpilot_expt_1000_bf_scaffold_3580_28
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29461..30606)
DNA (1146bp) protein (382aa)
sterol desaturase (EC:1.14.21.6) rbh
Sterol desaturase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WED0_9SPHN rbh
Sterol desaturase {ECO:0000313|EMBL:ENY81811.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_1000_bf_scaffold_3580_29
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30617..32776)
DNA (2160bp) protein (720aa)
DNA ligase {ECO:0000256|HAMAP-Rule:MF_01588, ECO:0000256|RuleBase:RU000618}; EC=6.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01588, ECO:0000256|RuleBase:RU000618};; Polydeoxyribonucleotide synthase [NAD(+)] {ECO:0000256|HAMAP-Rule:MF_01588}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
DNA ligase, NAD-dependent (EC:6.5.1.2); K01972 DNA ligase (NAD+) [EC:6.5.1.2] rbh
DNA ligase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=DNLJ_NOVAD rbh
SCNpilot_expt_1000_bf_scaffold_3580_30
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32773..33699)
DNA (927bp) protein (309aa)
DNA repair protein RecN n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZZT8_9SPHN
DNA repair protein RecN {ECO:0000256|PIRNR:PIRNR003128}; Recombination protein N {ECO:0000256|PIRNR:PIRNR003128}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
DNA repair protein RecN; K03631 DNA repair protein RecN (Recombination protein N)
Displaying items 1-30 of 35 in total

View Taxonomy