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SCNpilot_expt_1000_bf_scaffold_3678

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Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3678_1
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(431..2320)
DNA (1890bp) protein (630aa)
Putative alpha-amino acid ester hydrolase n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1NG13_9SPHN rbh
Scaffold16, whole genome shotgun sequence {ECO:0000313|EMBL:KIS30911.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
peptidase S15; K06978 rbh
SCNpilot_expt_1000_bf_scaffold_3678_2
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2422..3093)
DNA (672bp) protein (224aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YJD4_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAD48535.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3678_3
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3103..4569)
DNA (1467bp) protein (489aa)
3-deoxy-7-phosphoheptulonate synthase (EC:2.5.1.54); K01626 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] rbh
3-deoxy-7-phosphoheptulonate synthase n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9C592_9SPHN rbh
3-deoxy-7-phosphoheptulonate synthase {ECO:0000313|EMBL:EIZ78645.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
SCNpilot_expt_1000_bf_scaffold_3678_4
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4831..8337)
DNA (3507bp) protein (1169aa)
zinc protease (EC:3.4.99.-); K07263 zinc protease [EC:3.4.24.-] rbh
Zinc protease {ECO:0000313|EMBL:CCA92811.1}; EC=3.4.99.- {ECO:0000313|EMBL:CCA92811.1};; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
Zinc protease n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IN09_9SPHN rbh
SCNpilot_expt_1000_bf_scaffold_3678_5
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8342..9022)
DNA (681bp) protein (227aa)
Short-chain alcohol dehydrogenase n=1 Tax=Novosphingobium sp. AP12 RepID=J3A873_9SPHN rbh
Short-chain alcohol dehydrogenase {ECO:0000313|EMBL:EJL28006.1}; Flags: Precursor;; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
short-chain dehydrogenase/reductase SDR rbh
SCNpilot_expt_1000_bf_scaffold_3678_6
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9094..9867)
DNA (774bp) protein (258aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G6J5_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO55904.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3678_7
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10046..10621
DNA (576bp) protein (192aa)
Thioredoxin-like protein n=1 Tax=Novosphingobium sp. AP12 RepID=J2ZU43_9SPHN rbh
Thioredoxin-like protein {ECO:0000313|EMBL:EJL22224.1}; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
nitrogen-fixing NifU-like
SCNpilot_expt_1000_bf_scaffold_3678_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10621..11226
DNA (606bp) protein (202aa)
hypothetical protein; K00540 [EC:1.-.-.-]
Putative NADH dehydrogenase/NAD(P)H nitroreductase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YNE7_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO54674.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
SCNpilot_expt_1000_bf_scaffold_3678_9
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11231..11848
DNA (618bp) protein (206aa)
Universal bacterial protein YeaZ n=1 Tax=Novosphingobium sp. AP12 RepID=J2GI48_9SPHN
Universal bacterial protein YeaZ {ECO:0000313|EMBL:EJL22223.1}; Flags: Precursor;; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
metal-dependent protease
SCNpilot_expt_1000_bf_scaffold_3678_10
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11845..12300
DNA (456bp) protein (152aa)
acetyltransferase; K03789 ribosomal-protein-alanine N-acetyltransferase [EC:2.3.1.128]
Acetyltransferase n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2N954_ERYLH
Acetyltransferase {ECO:0000313|EMBL:KHK92961.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
SCNpilot_expt_1000_bf_scaffold_3678_11
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12474..12908
DNA (435bp) protein (145aa)
MucR family transcriptional regulator n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9C488_9SPHN
MucR family transcriptional regulator {ECO:0000313|EMBL:EIZ78637.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
MucR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_3678_12
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13000..13425
DNA (426bp) protein (142aa)
Fur family transcriptional regulator, ferric uptake regulator n=1 Tax=Sphingomonas sp. LH128 RepID=J8VWA1_9SPHN
Fur family transcriptional regulator {ECO:0000313|EMBL:KHK92963.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
Fur family transcriptional regulator, ferric uptake regulator; K03711 Fur family transcriptional regulator, ferric uptake regulator
SCNpilot_expt_1000_bf_scaffold_3678_13
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13443..14054
DNA (612bp) protein (204aa)
1-acyl-sn-glycerol-3-phosphate acyltransferase {ECO:0000313|EMBL:GAO54669.1}; EC=2.3.1.51 {ECO:0000313|EMBL:GAO54669.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
Lyso-ornithine lipid acyltransferase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9P5_NOVAD
lyso-ornithine lipid acyltransferase
SCNpilot_expt_1000_bf_scaffold_3678_14
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14320..15654
DNA (1335bp) protein (445aa)
tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00078006}; EC=2.8.4.3 {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00077858};; (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB {ECO:0000256|HAMAP-Rule:MF_01864}; tRNA-i(6)A37 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01864}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium m
(dimethylallyl)adenosine tRNA methylthiotransferase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B42989 rbh
tRNA-i(6)A37 modification protein MiaB; K06168 bifunctional enzyme involved in thiolation and methylation of tRNA
SCNpilot_expt_1000_bf_scaffold_3678_15
unknown

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15766..15924
DNA (159bp) protein (53aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3678_16
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15945..16238)
DNA (294bp) protein (98aa)
hypothetical protein n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B5CEC8
Uncharacterized protein {ECO:0000313|EMBL:GAO40703.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
SCNpilot_expt_1000_bf_scaffold_3678_17
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16500..17429
DNA (930bp) protein (310aa)
PhoH-like protein n=2 Tax=Novosphingobium RepID=F6II46_9SPHN
PhoH {ECO:0000313|EMBL:KHK89335.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
PhoH-like protein; K06217 phosphate starvation-inducible protein PhoH and related proteins
SCNpilot_expt_1000_bf_scaffold_3678_18
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17383..17499
DNA (117bp) protein (39aa)
PhoH-like protein n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9WF83_9SPHN
PhoH {ECO:0000313|EMBL:AIT06291.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
PhoH-like protein; K06217 phosphate starvation-inducible protein PhoH and related proteins
SCNpilot_expt_1000_bf_scaffold_3678_19
Sphingobium sp. AP49, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17499..18053
DNA (555bp) protein (185aa)
Uncharacterized protein n=1 Tax=Sphingobium sp. AP49 RepID=J2L022_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EJK80711.1}; TaxID=1144307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. AP49.;"
SCNpilot_expt_1000_bf_scaffold_3678_20
Micromonas sp. RCC299, Micromonas, Mamiellales, Mamiellophyceae, Chlorophyta, Viridiplantae

Not on your lists

comp(18025..18675)
DNA (651bp) protein (217aa)
Putative uncharacterized protein n=1 Tax=Oscillochloris trichoides DG-6 RepID=E1IAV0_9CHLR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACO69774.1}; TaxID=296587 species="Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas.;" source="Micromonas sp. (strain RCC299 / NOUM17) (Picoplanktonic green alga).;"
SCNpilot_expt_1000_bf_scaffold_3678_21
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18696..19859)
DNA (1164bp) protein (388aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
Sensor signal transduction histidine kinase n=1 Tax=Sphingomonas sp. LH128 RepID=J8VRB6_9SPHN
sensor signal transduction histidine kinase
SCNpilot_expt_1000_bf_scaffold_3678_22
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20230..20907)
DNA (678bp) protein (226aa)
Two component transcriptional regulator, winged helix family n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G6L8_NOVAD rbh
Two component transcriptional regulator {ECO:0000313|EMBL:KHS49023.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
two component transcriptional regulator; K02483 two-component system, OmpR family, response regulator rbh
SCNpilot_expt_1000_bf_scaffold_3678_23
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21001..21309)
DNA (309bp) protein (103aa)
Putative uncharacterized protein n=2 Tax=Novosphingobium RepID=F6ING7_9SPHN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EHJ62749.1}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium pentaromativorans US6-1.;"
SCNpilot_expt_1000_bf_scaffold_3678_24
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21625..23073
DNA (1449bp) protein (483aa)
ABC transporter related protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z9G3_9SPHN
ABC transporter related protein {ECO:0000313|EMBL:EGD58779.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
ABC transporter-like protein; K15738 ATP-binding cassette, subfamily F, uup
SCNpilot_expt_1000_bf_scaffold_3678_25
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23185..23670)
DNA (486bp) protein (162aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G6L5_NOVAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD26508.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_expt_1000_bf_scaffold_3678_26
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23761..24333
DNA (573bp) protein (191aa)
Transcriptional regulator, XRE family n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G6L4_NOVAD
XRE family transcriptional regulator {ECO:0000313|EMBL:KHS49026.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
XRE family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_3678_27
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24375..25565
DNA (1191bp) protein (397aa)
Uncharacterized protein n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0IFD3_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:EQB10385.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
group 1 glycosyl transferase family protein rbh
SCNpilot_expt_1000_bf_scaffold_3678_28
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25717..26694)
DNA (978bp) protein (326aa)
preprotein translocase subunit SecF n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B69A1A
Protein-export membrane protein SecF {ECO:0000256|HAMAP-Rule:MF_01464}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
protein translocase subunit secF; K03074 preprotein translocase subunit SecF
SCNpilot_expt_1000_bf_scaffold_3678_29
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26707..28299)
DNA (1593bp) protein (531aa)
preprotein translocase subunit SecD n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B304E9 rbh
Protein translocase subunit SecD {ECO:0000256|HAMAP-Rule:MF_01463}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
secD; preprotein translocase subunit SecD; K03072 preprotein translocase subunit SecD rbh
SCNpilot_expt_1000_bf_scaffold_3678_30
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28324..28665)
DNA (342bp) protein (114aa)
Protein translocase subunit yajC n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G6L0_NOVAD
Protein translocase subunit yajC {ECO:0000313|EMBL:KHS49030.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
protein translocase subunit yajC; K03210 preprotein translocase subunit YajC
Displaying 30 items

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