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SCNpilot_expt_1000_bf_scaffold_3887

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3887_1
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..511)
DNA (510bp) protein (170aa)
arylesterase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B31270
Arylesterase {ECO:0000313|EMBL:AIT05561.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
alpha/beta hydrolase fold protein
SCNpilot_expt_1000_bf_scaffold_3887_2
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1070..1996
DNA (927bp) protein (309aa)
Radical SAM n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G6P4_NOVAD
radical SAM family protein
Radical SAM {ECO:0000313|EMBL:ABD26479.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_expt_1000_bf_scaffold_3887_3
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2008..3411
DNA (1404bp) protein (468aa)
uracil-DNA glycosylase; K02334 DNA polymerase bacteriophage-type [EC:2.7.7.7] rbh
Uracil-DNA glycosylase superfamily n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G6P5_NOVAD rbh
Uracil-DNA glycosylase {ECO:0000313|EMBL:KHS48993.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
SCNpilot_expt_1000_bf_scaffold_3887_4
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3872..5275)
DNA (1404bp) protein (468aa)
TonB-denpendent receptor n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248AB3A
TonB-dependent receptor
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
SCNpilot_expt_1000_bf_scaffold_3887_5
unknown

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comp(5574..6401)
DNA (828bp) protein (276aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3887_6
Chlorobium phaeovibrioides, Chlorobium, Chlorobiales, Chlorobia, Chlorobi, Bacteria

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comp(6599..7924)
DNA (1326bp) protein (442aa)
Major facilitator superfamily MFS_1 n=1 Tax=Prosthecochloris vibrioformis (strain DSM 265) RepID=A4SFQ0_PROVI
major facilitator transporter
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ABP37309.1}; TaxID=290318 species="Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae; Chlorobium/Pelodictyon group; Chlorobium.;" source="Prosthecochloris vibrioformis (strain DSM 265) (Chlorobium vibrioforme; subsp. thiosulfatophilum (strain DSM 265)) (Chlorobium phaeovibrioides; (strain DSM 265)).;"
SCNpilot_expt_1000_bf_scaffold_3887_7
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7979..9727)
DNA (1749bp) protein (583aa)
IlvD protein {ECO:0000313|EMBL:BAQ43719.1}; EC=4.2.1.9 {ECO:0000313|EMBL:BAQ43719.1};; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
dihydroxy-acid dehydratase (EC:4.2.1.9); K01687 dihydroxy-acid dehydratase [EC:4.2.1.9] rbh
Putative dihydroxy-acid dehydratase n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RR09_9PROT rbh
SCNpilot_expt_1000_bf_scaffold_3887_8
Methylobacterium mesophilicum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9724..10659)
DNA (936bp) protein (312aa)
NAD-binding D-isomer specific 2-hydroxyacid dehydrogenase n=1 Tax=Methylobacterium mesophilicum SR1.6/6 RepID=M7Y113_9RHIZ
NAD-binding D-isomer specific 2-hydroxyacid dehydrogenase {ECO:0000313|EMBL:EMS40907.1}; TaxID=908290 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium mesophilicum SR1.6/6.;"
NAD-binding D-isomer specific 2-hydroxyacid dehydrogenase
SCNpilot_expt_1000_bf_scaffold_3887_9
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10712..12343)
DNA (1632bp) protein (544aa)
hypothetical protein n=1 Tax=Streptomyces rapamycinicus RepID=UPI00038301C9
Uncharacterized protein {ECO:0000313|EMBL:KGF70723.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
putative acetolactate synthase
SCNpilot_expt_1000_bf_scaffold_3887_10
unknown

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comp(12340..12735)
DNA (396bp) protein (132aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3887_11
Burkholderia sp. A9, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(12732..13217)
DNA (486bp) protein (162aa)
hypothetical protein n=1 Tax=Burkholderia sp. JPY251 RepID=UPI0003689C4D
Uncharacterized protein {ECO:0000313|EMBL:KHK59520.1}; TaxID=1365108 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. A9.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3887_12
Rhizobium sp. LPU83, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13246..14130)
DNA (885bp) protein (295aa)
hypothetical protein n=1 Tax=Arthrobacter sp. 135MFCol5.1 RepID=UPI0003751AE6
Uncharacterized protein {ECO:0000313|EMBL:CDM63052.1}; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. LPU83.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3887_13
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(14177..14737)
DNA (561bp) protein (187aa)
Amidase n=1 Tax=Pseudomonas fluorescens BBc6R8 RepID=V7E770_PSEFL
Amidase {ECO:0000313|EMBL:ESW56788.1}; TaxID=463794 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens BBc6R8.;"
isochorismatase hydrolase
SCNpilot_expt_1000_bf_scaffold_3887_14
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15019..15801)
DNA (783bp) protein (261aa)
Transcriptional regulator, IclR family n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TSW0_TISMK
kdgR; transcriptional regulator, IclR family
Transcriptional regulator, IclR family {ECO:0000313|EMBL:AFK55848.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
SCNpilot_expt_1000_bf_scaffold_3887_15
Pseudomonas sp. M47T1, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16528..16866
DNA (339bp) protein (113aa)
Major facilitator superfamily multidrug efflux transporter n=1 Tax=Pseudomonas sp. M47T1 RepID=I4N6B6_9PSED
Major facilitator superfamily multidrug efflux transporter {ECO:0000313|EMBL:EIK97006.1}; TaxID=1179778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. M47T1.;"
major facilitator superfamily protein
Displaying 15 items

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