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SCNpilot_expt_1000_bf_scaffold_9541

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_9541_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..504)
DNA (504bp) protein (168aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G2Z7_NOVAD
Membrane protein STY4873 {ECO:0000313|EMBL:GAO54238.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_9541_2
unknown

Not on your lists

1269..1550
DNA (282bp) protein (94aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_9541_3
unknown

Not on your lists

1581..1775
DNA (195bp) protein (65aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_9541_4
unknown

Not on your lists

1785..2156
DNA (372bp) protein (124aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_9541_5
unknown

Not on your lists

2178..2360
DNA (183bp) protein (61aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_9541_6
RIFOXYC2_FULL_Burkholderiales_59_8_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2769..2954
DNA (186bp) protein (62aa)
Tax=RIFOXYC2_FULL_Burkholderiales_59_8_curated
SCNpilot_expt_1000_bf_scaffold_9541_7
unknown

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3084..3239
DNA (156bp) protein (52aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_9541_8
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3355..4197)
DNA (843bp) protein (281aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z580_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EGD60258.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
acriflavin resistance protein
SCNpilot_expt_1000_bf_scaffold_9541_9
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4202..5398)
DNA (1197bp) protein (399aa)
Secretion protein HlyD n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IFF2_9SPHN rbh
secretion protein HlyD rbh
Secretion protein HlyD {ECO:0000313|EMBL:CCA91027.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
SCNpilot_expt_1000_bf_scaffold_9541_10
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5627..5926)
DNA (300bp) protein (100aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. AP12 RepID=J2PK48_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KHS42510.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_9541_11
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6398..7645
DNA (1248bp) protein (416aa)
tRNA-specific 2-thiouridylase MnmA {ECO:0000256|HAMAP-Rule:MF_00144}; EC=2.8.1.- {ECO:0000256|HAMAP-Rule:MF_00144};; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase (EC:2.1.1.61); K00566 tRNA-specific 2-thiouridylase [EC:2.8.1.-]
tRNA-specific 2-thiouridylase MnmA n=1 Tax=Novosphingobium sp. AP12 RepID=J3A7K7_9SPHN
SCNpilot_expt_1000_bf_scaffold_9541_12
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7560..7910)
DNA (351bp) protein (117aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G2Z0_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:KHS42507.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_9541_13
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7939..9069
DNA (1131bp) protein (377aa)
Beta-lactamase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G2Y9_NOVAD rbh
Beta-lactamase {ECO:0000313|EMBL:KHS42506.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
beta-lactamase rbh
SCNpilot_expt_1000_bf_scaffold_9541_14
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9044..9994)
DNA (951bp) protein (317aa)
Cation diffusion facilitator family transporter n=1 Tax=Sphingomonas sp. LH128 RepID=J8VJM7_9SPHN rbh
Ferrous iron transporter {ECO:0000313|EMBL:KHK89666.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
cation diffusion facilitator family transporter; K13283 ferrous-iron efflux pump FieF rbh
SCNpilot_expt_1000_bf_scaffold_9541_15
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9991..10491)
DNA (501bp) protein (167aa)
Pyridoxine/pyridoxamine 5'-phosphate oxidase {ECO:0000256|HAMAP-Rule:MF_01629}; EC=1.4.3.5 {ECO:0000256|HAMAP-Rule:MF_01629};; PNP/PMP oxidase {ECO:0000256|HAMAP-Rule:MF_01629}; Pyridoxal 5'-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_01629}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
pyridoxamine 5'-phosphate oxidase (EC:1.4.3.5); K00275 pyridoxamine 5'-phosphate oxidase [EC:1.4.3.5]
Pyridoxine/pyridoxamine 5'-phosphate oxidase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A2K1_9SPHN
SCNpilot_expt_1000_bf_scaffold_9541_16
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10711..11667
DNA (957bp) protein (319aa)
Heat shock protein DnaJ-like n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IFF9_9SPHN rbh
DnaJ-class molecular chaperone cbpA {ECO:0000313|EMBL:GAO54248.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
molecular chaperone DnaJ rbh
SCNpilot_expt_1000_bf_scaffold_9541_17
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11680..12741
DNA (1062bp) protein (354aa)
Ribonuclease BN n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GCC4_NOVAD
Ribonuclease BN {ECO:0000313|EMBL:KHS42500.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
ribonuclease BN; K07058 membrane protein
SCNpilot_expt_1000_bf_scaffold_9541_18
Rhodomicrobium vannielii, Rhodomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13536..14105)
DNA (570bp) protein (190aa)
Putative uncharacterized protein n=1 Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) RepID=E3HYM5_RHOVT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADP69766.1}; Flags: Precursor;; TaxID=648757 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Rhodomicrobium.;" source="Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 /; LMG 4299).;"
SCNpilot_expt_1000_bf_scaffold_9541_19
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14177..14575)
DNA (399bp) protein (133aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YBU1_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAD51001.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
SCNpilot_expt_1000_bf_scaffold_9541_20
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15078..15566)
DNA (489bp) protein (163aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YQM9_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAD51002.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
membrane-anchored cell surface protein, haemagluttinin
Displaying 20 items

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