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SCNpilot_expt_1000_bf_scaffold_9619

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_9619_1
unknown

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comp(1..150)
DNA (150bp) protein (50aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_9619_2
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(147..785)
DNA (639bp) protein (213aa)
Cytidylate kinase {ECO:0000256|HAMAP-Rule:MF_00238}; Short=CK {ECO:0000256|HAMAP-Rule:MF_00238};; EC=2.7.4.25 {ECO:0000256|HAMAP-Rule:MF_00238};; Cytidine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00238}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
cytidylate kinase (EC:2.7.4.14); K00945 cytidylate kinase [EC:2.7.4.14]
Cytidylate kinase n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0HZX2_9SPHN rbh
SCNpilot_expt_1000_bf_scaffold_9619_3
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(782..1048)
DNA (267bp) protein (89aa)
Putative permease n=1 Tax=Novosphingobium sp. PP1Y RepID=F6ILJ0_9SPHN
putative permease
Permease {ECO:0000313|EMBL:KHK91047.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
SCNpilot_expt_1000_bf_scaffold_9619_4
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1045..2409)
DNA (1365bp) protein (455aa)
3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531}; EC=2.5.1.19 {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531};; 5-enolpyruvylshikimate-3-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00210}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
3-phosphoshikimate 1-carboxyvinyltransferase (EC:2.5.1.19); K00800 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19] rbh
3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Sphingomonas sp. LH128 RepID=J8VZT7_9SPHN rbh
SCNpilot_expt_1000_bf_scaffold_9619_5
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2585..2896
DNA (312bp) protein (104aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G8Q2_NOVAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD25771.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_expt_1000_bf_scaffold_9619_6
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3932..4597
DNA (666bp) protein (222aa)
Signal recognition particle protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G8H5_NOVAD
signal recognition particle subunit FFH/SRP54 (srp54); K03106 signal recognition particle subunit SRP54
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_expt_1000_bf_scaffold_9619_7
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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4629..5141
DNA (513bp) protein (171aa)
30S ribosomal protein S16 n=2 Tax=Novosphingobium RepID=F6ILJ4_9SPHN
30S ribosomal protein S16; K02959 small subunit ribosomal protein S16
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium pentaromativorans US6-1.;"
SCNpilot_expt_1000_bf_scaffold_9619_8
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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5145..5648
DNA (504bp) protein (168aa)
Ribosome maturation factor RimM n=1 Tax=Novosphingobium sp. AP12 PF8_9SPHN">RepID=J3APF8_9SPHN
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
16S rRNA-processing protein RimM; K02860 16S rRNA processing protein RimM
SCNpilot_expt_1000_bf_scaffold_9619_9
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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5603..6391
DNA (789bp) protein (263aa)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605};; M1G-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; tRNA [GM37] methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
tRNA (guanine37-N1) methyltransferase (EC:2.1.1.31); K00554 tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228]
tRNA (guanine-N(1)-)-methyltransferase n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EEW0_9SPHN
SCNpilot_expt_1000_bf_scaffold_9619_10
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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6388..6795
DNA (408bp) protein (136aa)
50S ribosomal protein L19 n=1 Tax=Sphingomonas sp. LH128 RepID=J8VZM5_9SPHN
50S ribosomal protein L19 {ECO:0000256|HAMAP-Rule:MF_00402, ECO:0000256|RuleBase:RU000559}; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium resinovorum.;"
50S ribosomal protein L19; K02884 large subunit ribosomal protein L19
SCNpilot_expt_1000_bf_scaffold_9619_11
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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6898..7491
DNA (594bp) protein (198aa)
Aspartate-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121}; Short=ASA dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121};; Short=ASADH {ECO:0000256|HAMAP-Rule:MF_02121};; EC=1.2.1.11 {ECO:0000256|HAMAP-Rule:MF_02121};; Aspartate-beta-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
aspartate-semialdehyde dehydrogenase (EC:1.2.1.11); K00133 aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
Aspartate-semialdehyde dehydrogenase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G8G9_NOVAD
SCNpilot_expt_1000_bf_scaffold_9619_12
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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7488..7922
DNA (435bp) protein (145aa)
Aspartate-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121}; Short=ASA dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121};; Short=ASADH {ECO:0000256|HAMAP-Rule:MF_02121};; EC=1.2.1.11 {ECO:0000256|HAMAP-Rule:MF_02121};; Aspartate-beta-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
asd; aspartate-semialdehyde dehydrogenase (EC:1.2.1.11); K00133 aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
Aspartate-semialdehyde dehydrogenase n=1 Tax=Sphingomonas sp. LH128 RepID=J8VIJ4_9SPHN
SCNpilot_expt_1000_bf_scaffold_9619_13
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8998..9255
DNA (258bp) protein (86aa)
hydrolase n=1 Tax=Citromicrobium sp. JLT1363 RepID=UPI000225E54A
Hydrolase {ECO:0000313|EMBL:EQB18402.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
hydrolase
SCNpilot_expt_1000_bf_scaffold_9619_14
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9543..10148)
DNA (606bp) protein (202aa)
50S ribosomal protein L9 n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9L6B5_9SPHN rbh
50S ribosomal protein L9 {ECO:0000256|HAMAP-Rule:MF_00503}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
50S ribosomal protein L9; K02939 large subunit ribosomal protein L9 rbh
SCNpilot_expt_1000_bf_scaffold_9619_15
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10162..10368)
DNA (207bp) protein (69aa)
30S ribosomal protein S18 n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9C947_9SPHN
30S ribosomal protein S18 {ECO:0000256|HAMAP-Rule:MF_00270}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
rpsR; 30S ribosomal protein S18; K02963 small subunit ribosomal protein S18
SCNpilot_expt_1000_bf_scaffold_9619_16
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(10368..10733)
DNA (366bp) protein (122aa)
30S ribosomal protein S6 n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B7A861
30S ribosomal protein S6 {ECO:0000256|HAMAP-Rule:MF_00360}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
rpsF; 30S ribosomal protein S6; K02990 small subunit ribosomal protein S6
SCNpilot_expt_1000_bf_scaffold_9619_17
Hydrocarboniphaga effusa, Hydrocarboniphaga, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11084..11662)
DNA (579bp) protein (193aa)
hypothetical protein n=1 Tax=Singularimonas variicoloris RepID=UPI00036090A6
Uncharacterized protein {ECO:0000313|EMBL:EIT70917.1}; TaxID=1172194 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Sinobacteraceae; Hydrocarboniphaga.;" source="Hydrocarboniphaga effusa AP103.;"
SCNpilot_expt_1000_bf_scaffold_9619_18
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11866..12756
DNA (891bp) protein (297aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8VFX5_9SPHN rbh
ABC transporter {ECO:0000313|EMBL:EZP84597.1}; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium resinovorum.;"
hypothetical protein; K09781 hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_9619_19
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13424..14305)
DNA (882bp) protein (294aa)
Glycosidase n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0J642_9SPHN
Glycosidase {ECO:0000313|EMBL:EQB17404.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
glycosidase, PH1107-related
SCNpilot_expt_1000_bf_scaffold_9619_20
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14966..15115)
DNA (150bp) protein (50aa)
Uncharacterized protein n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0I2Z4_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB19697.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
SCNpilot_expt_1000_bf_scaffold_9619_21
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(15252..16805)
DNA (1554bp) protein (518aa)
PAS/PAC sensor hybrid histidine kinase n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6EV47_SPHCR
PAS/PAC sensor hybrid histidine kinase {ECO:0000313|EMBL:KEQ52222.1}; TaxID=46429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum.;"
PAS/PAC sensor hybrid histidine kinase
SCNpilot_expt_1000_bf_scaffold_9619_22
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17251..17850
DNA (600bp) protein (200aa)
putative DNA topoisomerase I; K03168 DNA topoisomerase I [EC:5.99.1.2]
Putative DNA topoisomerase I n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VGH7_SPHWW
Putative DNA topoisomerase I {ECO:0000313|EMBL:EZP74669.1}; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium resinovorum.;"
SCNpilot_expt_1000_bf_scaffold_9619_23
unknown

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17847..17981
DNA (135bp) protein (45aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_9619_24
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17989..18675)
DNA (687bp) protein (229aa)
Glycosyl transferase, group 1 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GAD6_NOVAD
group 1 glycosyl transferase
Glycosyl transferase, group 1 {ECO:0000313|EMBL:ABD25187.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
Displaying 24 items

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