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SCNpilot_expt_1000_bf_scaffold_5790

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_5790_1
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..266
DNA (264bp) protein (88aa)
Uncharacterized protein {ECO:0000313|EMBL:KHK92527.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
SCNpilot_expt_1000_bf_scaffold_5790_2
Burkholderia xenovorans, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

389..1219
DNA (831bp) protein (277aa)
Transcriptional regulator, IclR family n=1 Tax=Burkholderia xenovorans (strain LB400) PF5_BURXL">RepID=Q13PF5_BURXL
IclR family transcriptional regulator
Transcriptional regulator, IclR family {ECO:0000313|EMBL:ABE34034.1}; TaxID=266265 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia xenovorans (strain LB400).;"
SCNpilot_expt_1000_bf_scaffold_5790_3
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1224..1700)
DNA (477bp) protein (159aa)
L-lactate dehydrogenase (cytochrome) (EC:1.1.2.3); K15054 (S)-mandelate dehydrogenase [EC:1.1.99.31]
Alpha-hydroxyacid dehydrogenase, FMN-dependent L-lactate dehydrogenase n=1 Tax=Novosphingobium sp. AP12 RepID=J3AG10_9SPHN
Alpha-hydroxyacid dehydrogenase, FMN-dependent L-lactate dehydrogenase {ECO:0000313|EMBL:EJL31331.1}; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
SCNpilot_expt_1000_bf_scaffold_5790_4
unknown

Not on your lists

1780..2118
DNA (339bp) protein (113aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5790_5
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2372..3097)
DNA (726bp) protein (242aa)
Demethylmenaquinone methyltransferase n=1 Tax=Novosphingobium sp. AP12 RepID=J3A0H3_9SPHN rbh
Demethylmenaquinone methyltransferase {ECO:0000313|EMBL:EJL25046.1}; Flags: Precursor;; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase
SCNpilot_expt_1000_bf_scaffold_5790_6
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3094..4047)
DNA (954bp) protein (318aa)
serA2; D-3-phosphoglycerate dehydrogenase (EC:1.1.1.95); K00058 D-3-phosphoglycerate dehydrogenase [EC:1.1.1.95]
Phosphoglycerate dehydrogenase-like oxidoreductase n=1 Tax=Novosphingobium sp. AP12 RepID=J2G5W0_9SPHN rbh
Phosphoglycerate dehydrogenase {ECO:0000313|EMBL:KHK93241.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
SCNpilot_expt_1000_bf_scaffold_5790_7
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4053..5363)
DNA (1311bp) protein (437aa)
FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family n=1 Tax=Novosphingobium sp. AP12 RepID=J2GM97_9SPHN rbh
FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family {ECO:0000313|EMBL:EJL31330.1}; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
thermophilic desulfurizing enzyme rbh
SCNpilot_expt_1000_bf_scaffold_5790_8
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5487..5915
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5V723_SPHWW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ68089.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCNpilot_expt_1000_bf_scaffold_5790_9
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5980..6297
DNA (318bp) protein (106aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8VN16_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EJU12010.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
SCNpilot_expt_1000_bf_scaffold_5790_10
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6300..7172)
DNA (873bp) protein (291aa)
branched-chain alpha-keto acid dehydrogenase subunit E2; K09699 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168]
branched-chain alpha-keto acid dehydrogenase subunit E2 n=1 Tax=Sphingomonas elodea RepID=UPI00017091B3
Branched-chain alpha-keto acid dehydrogenase subunit E2 {ECO:0000313|EMBL:AJP73302.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_1000_bf_scaffold_5790_11
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7210..7542)
DNA (333bp) protein (111aa)
dihydrolipoyllysine-residue (2-methylpropanoyl)transferase (EC:2.3.1.168); K09699 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase) [EC:2.3.1.168]
UPI0003D5CB3A related cluster n=1 Tax=unknown RepID=UPI0003D5CB3A
Branched-chain alpha-keto acid dehydrogenase subunit E2 {ECO:0000313|EMBL:ETI63876.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
SCNpilot_expt_1000_bf_scaffold_5790_12
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7539..8552)
DNA (1014bp) protein (338aa)
branched-chain alpha-keto acid dehydrogenase, E1 component subunit beta; K00167 2-oxoisovalerate dehydrogenase E1 component, beta subunit [EC:1.2.4.4]
2-oxoisovalerate dehydrogenase subunit beta n=1 Tax=Sphingomonas sp. LH128 RepID=J8VP23_9SPHN rbh
2-oxoisovalerate dehydrogenase subunit beta {ECO:0000313|EMBL:EZP79342.1}; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium resinovorum.;"
SCNpilot_expt_1000_bf_scaffold_5790_13
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8554..9804)
DNA (1251bp) protein (417aa)
bkdA1; 2-oxoisovalerate dehydrogenase alpha subunit (EC:1.2.4.4); K00166 2-oxoisovalerate dehydrogenase E1 component, alpha subunit [EC:1.2.4.4]
Branched-chain alpha-keto acid dehydrogenase E1 component n=1 Tax=Sphingomonas sp. LH128 RepID=J8W474_9SPHN rbh
Branched-chain alpha-keto acid dehydrogenase E1 component {ECO:0000313|EMBL:EJU14481.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
SCNpilot_expt_1000_bf_scaffold_5790_14
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9985..10905)
DNA (921bp) protein (307aa)
gluconolactonase (EC:3.1.1.17); K01053 gluconolactonase [EC:3.1.1.17] rbh
SMP-30/gluconolaconase/LRE domain-containing protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8VKK1_9SPHN rbh
Gluconolactonase {ECO:0000313|EMBL:KHK93242.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
SCNpilot_expt_1000_bf_scaffold_5790_15
Mycobacterium vaccae, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12241..12585)
DNA (345bp) protein (115aa)
Uncharacterized protein n=1 Tax=Mycobacterium vaccae ATCC 25954 RepID=K0UZH0_MYCVA
Uncharacterized protein {ECO:0000313|EMBL:EJZ07983.1}; TaxID=1194972 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium vaccae ATCC 25954.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5790_16
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12651..13241)
DNA (591bp) protein (197aa)
Uncharacterized protein n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9D913_SPHYA
TetR family transcriptional regulator {ECO:0000313|EMBL:KFD26927.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_5790_17
unknown

Not on your lists

comp(13238..13357)
DNA (120bp) protein (40aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5790_18
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13418..13936
DNA (519bp) protein (173aa)
Peroxiredoxin n=1 Tax=Sphingobium ummariense RL-3 RepID=T0IWY4_9SPHN
Peroxiredoxin {ECO:0000313|EMBL:EQB33325.1}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen
SCNpilot_expt_1000_bf_scaffold_5790_19
Sphingomonas sp. SKA58, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14007..15260)
DNA (1254bp) protein (418aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1NHM6_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EAT10355.1}; TaxID=314266 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. (strain SKA58).;"
hypothetical protein
Displaying 19 items

View Taxonomy