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SCNpilot_expt_1000_bf_scaffold_5799

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_5799_1
unknown

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comp(2..79)
DNA (78bp) protein (26aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5799_2
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(147..2081)
DNA (1935bp) protein (645aa)
PREDICTED: elongation factor G, chloroplastic-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C1197F
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
fusA; elongation factor G; K02355 elongation factor G
SCNpilot_expt_1000_bf_scaffold_5799_3
Rhizobium sp. UR51a, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2081..2236)
DNA (156bp) protein (52aa)
elongation factor G n=1 Tax=Hoeflea sp. 108 RepID=UPI00037FF295
translation elongation factor EF-G
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=1604021 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. UR51a.;"
SCNpilot_expt_1000_bf_scaffold_5799_4
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2267..2737)
DNA (471bp) protein (157aa)
30S ribosomal protein S7 n=10 Tax=Mesorhizobium RepID=E8TMC0_MESCW
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
ribosomal protein S7, bacterial/organelle
SCNpilot_expt_1000_bf_scaffold_5799_5
Mesorhizobium sp. LNHC229A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2797..3168)
DNA (372bp) protein (124aa)
30S ribosomal protein S12 n=12 Tax=Mesorhizobium RepID=RS12_RHILO
30S ribosomal protein S12; K02950 small subunit ribosomal protein S12
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}; TaxID=1287240 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC229A00.;"
SCNpilot_expt_1000_bf_scaffold_5799_6
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3633..3929
DNA (297bp) protein (99aa)
Two component response regulator n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q98N62_RHILO
Transcriptional regulator {ECO:0000313|EMBL:EXL01325.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
two component response regulator
SCNpilot_expt_1000_bf_scaffold_5799_7
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4030..4569)
DNA (540bp) protein (180aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
DNA-directed RNA polymerase subunit beta'; K03046 DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
PREDICTED: bifunctional DNA-directed RNA polymerase subunit beta''''-beta''''''''-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C17456
SCNpilot_expt_1000_bf_scaffold_5799_8
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4793..7168
DNA (2376bp) protein (792aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:272 RepID=R6TKU1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CEG07608.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
SCNpilot_expt_1000_bf_scaffold_5799_9
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7141..7677)
DNA (537bp) protein (179aa)
DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6); K03046 DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
UPI0003CF4C0D related cluster n=1 Tax=unknown RepID=UPI0003CF4C0D
SCNpilot_expt_1000_bf_scaffold_5799_10
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8369..12484)
DNA (4116bp) protein (1372aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
DNA-directed RNA polymerase subunit beta n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KRG4_MESAW rbh
DNA-directed RNA polymerase, beta subunit rbh
SCNpilot_expt_1000_bf_scaffold_5799_11
Mesorhizobium sp. LSHC426A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12692..13069)
DNA (378bp) protein (126aa)
50S ribosomal protein L7 n=5 Tax=Mesorhizobium RepID=V7ES83_9RHIZ
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=1287298 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC426A00.;"
50S ribosomal protein L7/L12; K02935 large subunit ribosomal protein L7/L12
SCNpilot_expt_1000_bf_scaffold_5799_12
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(13124..13642)
DNA (519bp) protein (173aa)
50S ribosomal protein L10 n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KN97_MESAW
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362, ECO:0000256|RuleBase:RU003636}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
ribosomal protein L10
SCNpilot_expt_1000_bf_scaffold_5799_13
Mesorhizobium sp. LNHC229A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(14030..14728)
DNA (699bp) protein (233aa)
UPI0003CE02DE related cluster n=1 Tax=unknown RepID=UPI0003CE02DE rbh
50S ribosomal protein L1; K02863 large subunit ribosomal protein L1 rbh
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=1287240 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC229A00.;"
SCNpilot_expt_1000_bf_scaffold_5799_14
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(14733..15161)
DNA (429bp) protein (143aa)
50S ribosomal protein L11 n=2 Tax=Mesorhizobium RepID=G6Y9K2_9RHIZ
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736, ECO:0000256|SAAS:SAAS00021680}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
50S ribosomal protein L11; K02867 large subunit ribosomal protein L11
SCNpilot_expt_1000_bf_scaffold_5799_15
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(15323..15862)
DNA (540bp) protein (180aa)
Transcription termination/antitermination protein NusG n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HV88_9RHIZ
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
NusG antitermination factor; K02601 transcriptional antiterminator NusG
SCNpilot_expt_1000_bf_scaffold_5799_16
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(15890..16093)
DNA (204bp) protein (68aa)
Protein translocase subunit SecE n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7YDV7_MESOW
preprotein translocase subunit SecE; K03073 preprotein translocase subunit SecE
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
SCNpilot_expt_1000_bf_scaffold_5799_17
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(16651..16761)
DNA (111bp) protein (37aa)
tufB; elongation factor Tu (EC:3.6.5.3); K02358 elongation factor Tu
Elongation factor Tu n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3X7U2_RHIFR
Elongation factor Tu {ECO:0000256|RuleBase:RU004061}; Flags: Fragment;; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
Displaying 17 items

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