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SCNpilot_expt_1000_bf_scaffold_4000

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4000_1
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..538
DNA (537bp) protein (179aa)
Uncharacterized protein n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0J4I2_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB16849.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
short-chain dehydrogenase/reductase SDR
SCNpilot_expt_1000_bf_scaffold_4000_2
Brucella suis, Brucella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

535..1377
DNA (843bp) protein (281aa)
glucose 1-dehydrogenase; K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
Uncharacterized protein n=3 Tax=Brucella abortus RepID=N7TGE5_BRUAO
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:EEY28859.1}; TaxID=520489 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella.;" source="Brucella suis bv. 5 str. 513.;"
SCNpilot_expt_1000_bf_scaffold_4000_3
Pseudomonas sp. StFLB209, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1514..3130
DNA (1617bp) protein (539aa)
hypothetical protein; K09252 feruloyl esterase [EC:3.1.1.73]
hypothetical protein n=1 Tax=Uliginosibacterium gangwonense RepID=UPI00036EDA5E
Feruloyl esterase {ECO:0000313|EMBL:BAP45711.1}; TaxID=1028989 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. StFLB209.;"
SCNpilot_expt_1000_bf_scaffold_4000_4

Not on your lists

3144..4205
DNA (1062bp) protein (354aa)
putative iron-sulfur protein; K03862 vanillate monooxygenase [EC:1.14.13.82]
Uncharacterized protein (Fragment) n=1 Tax=uncultured organism RepID=T1W616_9ZZZZ rbh
Uncharacterized protein {ECO:0000313|EMBL:AGU10213.1}; Flags: Fragment;; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
SCNpilot_expt_1000_bf_scaffold_4000_5
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4202..4648
DNA (447bp) protein (149aa)
hypothetical protein n=1 Tax=Blastomonas sp. AAP53 RepID=UPI000313EA43
Uncharacterized protein {ECO:0000313|EMBL:KGM34301.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
glutathione-dependent formaldehyde-activating GFA
SCNpilot_expt_1000_bf_scaffold_4000_6
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4817..6529)
DNA (1713bp) protein (571aa)
D-lactate dehydrogenase {ECO:0000256|PIRNR:PIRNR000101}; EC=1.1.1.28 {ECO:0000256|PIRNR:PIRNR000101};; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
dld; D-lactate dehydrogenase; K03777 D-lactate dehydrogenase [EC:1.1.1.28]
D-lactate dehydrogenase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B580EA
SCNpilot_expt_1000_bf_scaffold_4000_7
Brevundimonas subvibrioides, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6544..7287)
DNA (744bp) protein (248aa)
short-chain dehydrogenase/reductase SDR; K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
Short-chain dehydrogenase/reductase SDR n=1 Tax=Brevundimonas subvibrioides (strain ATCC 15264 / DSM 4735 / LMG 14903 / NBRC 16000 / CB 81) RepID=D9QN22_BRESC
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ADL02178.1}; TaxID=633149 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas subvibrioides (strain ATCC 15264 / DSM 4735 / LMG 14903; / NBRC 16000 / CB 81) (Caulobacter subvibrioides).;"
SCNpilot_expt_1000_bf_scaffold_4000_8
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8396..9535
DNA (1140bp) protein (380aa)
Beta-galactosidase {ECO:0000256|PIRNR:PIRNR001084}; Short=Beta-gal {ECO:0000256|PIRNR:PIRNR001084};; EC=3.2.1.23 {ECO:0000256|PIRNR:PIRNR001084};; Flags: Precursor;; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
beta-galactosidase (EC:3.2.1.23); K12308 beta-galactosidase [EC:3.2.1.23]
beta-galactosidase n=2 Tax=Caulobacter RepID=UPI00036B3FD9
SCNpilot_expt_1000_bf_scaffold_4000_9
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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9633..10370
DNA (738bp) protein (246aa)
Transcriptional regulator, GntR family n=1 Tax=Caulobacter sp. (strain K31) RepID=B0T4C8_CAUSK rbh
GntR family transcriptional regulator; K03710 GntR family transcriptional regulator rbh
Transcriptional regulator, GntR family {ECO:0000313|EMBL:ABZ69428.1}; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCNpilot_expt_1000_bf_scaffold_4000_10
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10391..12052)
DNA (1662bp) protein (554aa)
PTS system subunit IIBC n=1 Tax=Sphingomonas sp. MM-1 RepID=M4RWW3_9SPHN
PTS system subunit IIBC
PTS system subunit IIBC {ECO:0000313|EMBL:AGH48210.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCNpilot_expt_1000_bf_scaffold_4000_11
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12036..14522)
DNA (2487bp) protein (829aa)
Phosphoenolpyruvate-protein phosphotransferase/phosphocarrier protein HPr/PTS system, glucose-specific IIA subunit n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S159_9SPHN
phosphoenolpyruvate-protein phosphotransferase/phosphocarrier protein HPr/PTS system, glucose-specific IIA subunit
Phosphoenolpyruvate-protein phosphotransferase/phosphocarrier protein HPr/PTS system, glucose-specific IIA subunit {ECO:0000313|EMBL:AGH48209.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCNpilot_expt_1000_bf_scaffold_4000_12
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14519..16597)
DNA (2079bp) protein (693aa)
Beta-N-acetylhexosaminidase {ECO:0000313|EMBL:KGB53083.1}; EC=3.2.1.52 {ECO:0000313|EMBL:KGB53083.1};; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
glucose/galactose transporter (EC:3.2.1.52); K12373 hexosaminidase [EC:3.2.1.52] rbh
beta-N-acetylhexosaminidase n=1 Tax=Gluconacetobacter oboediens RepID=UPI000237F3B2 rbh
SCNpilot_expt_1000_bf_scaffold_4000_13
Caulobacter segnis, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16689..17843)
DNA (1155bp) protein (385aa)
N-acetylglucosamine-6-phosphate deacetylase (EC:3.5.1.25); K01443 N-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25]
N-acetylglucosamine-6-phosphate deacetylase {ECO:0000256|PIRNR:PIRNR038994}; EC=3.5.1.25 {ECO:0000256|PIRNR:PIRNR038994};; GlcNAc 6-P deacetylase {ECO:0000256|PIRNR:PIRNR038994}; Flags: Precursor;; TaxID=509190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC; 15250 / LMG 17158 / TK0059) (Mycoplana segnis).;"
N-acetylglucosamine-6-phosphate deacetylase n=1 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VM61_CAUST
SCNpilot_expt_1000_bf_scaffold_4000_14
Caulobacter segnis, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17843..18889)
DNA (1047bp) protein (349aa)
glutamine--fructose-6-phosphate transaminase (EC:2.6.1.16); K00820 glucosamine--fructose-6-phosphate aminotransferase (isomerizing) [EC:2.6.1.16]
Glutamine--fructose-6-phosphate transaminase (Isomerizing) {ECO:0000313|EMBL:ADG11583.1}; EC=2.6.1.16 {ECO:0000313|EMBL:ADG11583.1};; TaxID=509190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC; 15250 / LMG 17158 / TK0059) (Mycoplana segnis).;"
Glutamine--fructose-6-phosphate transaminase (Isomerizing) n=1 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VM60_CAUST
SCNpilot_expt_1000_bf_scaffold_4000_15
Sphingobium herbicidovorans, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19092..20087
DNA (996bp) protein (332aa)
Uncharacterized protein n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0H2W7_9SPHN
Beta-glucosidase-like glycosyl hydrolase {ECO:0000313|EMBL:KFG89518.1}; TaxID=1219045 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium herbicidovorans (strain ATCC 700291 / DSM 11019 / NBRC; 16415 / MH) (Sphingomonas herbicidovorans).;"
glycoside hydrolase family protein
SCNpilot_expt_1000_bf_scaffold_4000_16
Sphingobium herbicidovorans, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20415..21428
DNA (1014bp) protein (338aa)
Uncharacterized protein n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0H2W7_9SPHN
Beta-glucosidase-like glycosyl hydrolase {ECO:0000313|EMBL:KFG89518.1}; TaxID=1219045 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium herbicidovorans (strain ATCC 700291 / DSM 11019 / NBRC; 16415 / MH) (Sphingomonas herbicidovorans).;"
glycoside hydrolase family protein
SCNpilot_expt_1000_bf_scaffold_4000_17
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21999..22595
DNA (597bp) protein (199aa)
Aldose 1-epimerase {ECO:0000256|PIRNR:PIRNR005096}; EC=5.1.3.3 {ECO:0000256|PIRNR:PIRNR005096};; Galactose mutarotase {ECO:0000256|PIRNR:PIRNR005096}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
aldose 1-epimerase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B529FD
aldose 1-epimerase
SCNpilot_expt_1000_bf_scaffold_4000_18
Cystobacter fuscus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22835..24844
DNA (2010bp) protein (670aa)
Uncharacterized protein n=1 Tax=Cystobacter fuscus DSM 2262 RepID=S9QKF7_9DELT
Uncharacterized protein {ECO:0000313|EMBL:EPX56968.1}; TaxID=1242864 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" source="Cystobacter fuscus DSM 2262.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4000_19
Sphingomonas sp. SKA58, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24857..25252)
DNA (396bp) protein (132aa)
glycoside hydrolase family 3; K05349 beta-glucosidase [EC:3.2.1.21]
Periplasmic beta-glucosidase n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1N783_9SPHN
Periplasmic beta-glucosidase {ECO:0000313|EMBL:EAT06846.1}; TaxID=314266 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. (strain SKA58).;"
SCNpilot_expt_1000_bf_scaffold_4000_20
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25384..25728)
DNA (345bp) protein (115aa)
NADPH quinone oxidoreductase, PIG3 family protein n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4R2G2_BREDI
NADPH quinone oxidoreductase, PIG3 family protein {ECO:0000313|EMBL:EGF95224.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
alcohol dehydrogenase
SCNpilot_expt_1000_bf_scaffold_4000_21
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25716..26354)
DNA (639bp) protein (213aa)
quinone oxidoreductase (EC:1.6.5.5)
NAD(P)H quinone oxidoreductase, PIG3 family n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QC89_BREDI
NAD(P)H quinone oxidoreductase, PIG3 family {ECO:0000313|EMBL:EKY25217.1}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
SCNpilot_expt_1000_bf_scaffold_4000_22
Sphingobium lactosutens, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26528..27880
DNA (1353bp) protein (451aa)
hypothetical protein n=1 Tax=Massilia niastensis RepID=UPI0003643BF0 rbh
Uncharacterized protein {ECO:0000313|EMBL:EQB17296.1}; TaxID=1331060 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lactosutens DS20.;"
Rieske (2Fe-2S) domain-containing protein
Displaying 22 items

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