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SCNpilot_expt_1000_bf_scaffold_4126

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4126_1
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

402..3140
DNA (2739bp) protein (913aa)
TonB-dependent receptor n=1 Tax=Sphingomonas sp. LH128 RepID=J8VMV0_9SPHN
Scaffold21, whole genome shotgun sequence {ECO:0000313|EMBL:KIS30586.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
TonB-dependent receptor
SCNpilot_expt_1000_bf_scaffold_4126_2
Kirrobacter mercurialis, Kirrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3367..4590
DNA (1224bp) protein (408aa)
Uncharacterized protein n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9D672_SPHYA rbh
Major facilitator transporter {ECO:0000313|EMBL:KHL25528.1}; TaxID=1572751 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Kirrobacter.;" source="Kirrobacter mercurialis.;"
iolF; inositol transport protein; K06610 MFS transporter, SP family, inositol transporter rbh
SCNpilot_expt_1000_bf_scaffold_4126_3
Streptomyces olindensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4601..7189
DNA (2589bp) protein (863aa)
Bacterial alpha-L-rhamnosidase n=1 Tax=Streptomyces ipomoeae 91-03 RepID=L1KLF7_9ACTO rbh
Hydrolase {ECO:0000313|EMBL:KDN73476.1}; TaxID=358823 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces olindensis.;"
alpha-L-rhamnosidase rbh
SCNpilot_expt_1000_bf_scaffold_4126_4
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7176..8489)
DNA (1314bp) protein (438aa)
xylose isomerase (EC:5.3.1.5); K01805 xylose isomerase [EC:5.3.1.5] rbh
Xylose isomerase {ECO:0000256|HAMAP-Rule:MF_00455, ECO:0000256|RuleBase:RU000609}; EC=5.3.1.5 {ECO:0000256|HAMAP-Rule:MF_00455, ECO:0000256|RuleBase:RU000609};; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
Xylose isomerase n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IN67_9SPHN rbh
SCNpilot_expt_1000_bf_scaffold_4126_5
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8501..9943)
DNA (1443bp) protein (481aa)
xylulokinase (EC:2.7.1.17); K00854 xylulokinase [EC:2.7.1.17] rbh
Xylulokinase {ECO:0000313|EMBL:CCA92870.1}; EC=2.7.1.17 {ECO:0000313|EMBL:CCA92870.1};; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
Xylulokinase n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IN68_9SPHN rbh
SCNpilot_expt_1000_bf_scaffold_4126_6
Fibrisoma limi, Fibrisoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(10022..10288)
DNA (267bp) protein (89aa)
Alpha-L-rhamnosidase n=1 Tax=Fibrisoma limi BUZ 3 RepID=I2GCK7_9BACT
Alpha-L-rhamnosidase {ECO:0000313|EMBL:CCH51631.1}; TaxID=1185876 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrisoma.;" source="Fibrisoma limi BUZ 3.;"
alpha-L-rhamnosidase
SCNpilot_expt_1000_bf_scaffold_4126_7
unknown

Not on your lists

10731..11912
DNA (1182bp) protein (394aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4126_8
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12377..14524)
DNA (2148bp) protein (716aa)
Uncharacterized protein n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9CV51_SPHYA rbh
Scaffold21, whole genome shotgun sequence {ECO:0000313|EMBL:KIS30630.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_4126_9
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14864..15826)
DNA (963bp) protein (321aa)
Transcriptional regulator, LacI family n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GAC1_NOVAD rbh
LacI family transcription regulator; K02529 LacI family transcriptional regulator rbh
Transcriptional regulator, LacI family {ECO:0000313|EMBL:ABD25202.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_expt_1000_bf_scaffold_4126_10
GWF1_Sphingomonadales_63_6_curated, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16212..17606
DNA (1395bp) protein (465aa)
Uncharacterized protein n=1 Tax=Hirschia baltica (strain ATCC 49814 / DSM 5838 / IFAM 1418) RepID=C6XPP5_HIRBI rbh
hypothetical protein rbh
Tax=GWF1_Sphingomonadales_63_6_curated
SCNpilot_expt_1000_bf_scaffold_4126_11
Sinorhizobium americanum, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17519..18286)
DNA (768bp) protein (256aa)
garL; 5-keto-4-deoxy-D-glucarate aldolase GarL (EC:4.1.2.20)
5-keto-4-deoxy-D-glucarate aldolase GarL n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3X496_RHIFR
4-hydroxy-2-oxovalerate aldolase {ECO:0000313|EMBL:KEC80083.1}; TaxID=1408224 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium americanum CCGM7.;"
SCNpilot_expt_1000_bf_scaffold_4126_12
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18654..20006
DNA (1353bp) protein (451aa)
hypothetical protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00037FE0DD
Uncharacterized protein {ECO:0000313|EMBL:KHK91999.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4126_13
Frankia sp. EAN1pec, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20025..21458
DNA (1434bp) protein (478aa)
long-chain-fatty-acyl-CoA reductase (EC:1.2.1.50) rbh
Acyl-CoA reductase {ECO:0000256|PIRNR:PIRNR009414}; EC=1.2.1.50 {ECO:0000256|PIRNR:PIRNR009414};; TaxID=298653 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EAN1pec).;"
long-chain-fatty-acyl-CoA reductase n=1 Tax=Frankia sp. BMG5.12 RepID=UPI000366C314 rbh
SCNpilot_expt_1000_bf_scaffold_4126_14
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21553..22143
DNA (591bp) protein (197aa)
Transcriptional regulator n=1 Tax=Sphingobium sp. AP49 RepID=J2DUM0_9SPHN
TetR family transcriptional regulator {ECO:0000313|EMBL:KFD25813.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_4126_15
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22701..23909)
DNA (1209bp) protein (403aa)
Putative ABC transporter permease protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPG0_9SPHN rbh
Multidrug ABC transporter substrate-binding protein {ECO:0000313|EMBL:KHK93434.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
putative ABC transporter permease; K02004 putative ABC transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_4126_16
Sphingobium chinhatense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23909..24646)
DNA (738bp) protein (246aa)
ABC transporter n=1 Tax=Sphingobium sp. HDIP04 RepID=T0GVV1_9SPHN rbh
ABC transporter {ECO:0000313|EMBL:EPR09441.1}; TaxID=1346790 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chinhatense IP26.;"
ABC-type transport system ATPase component; K02003 putative ABC transport system ATP-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_4126_17
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24639..26039)
DNA (1401bp) protein (467aa)
HlyD family secretion protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPG2_9SPHN
HlyD family secretion protein; K02005 HlyD family secretion protein
HlyD family secretion protein {ECO:0000313|EMBL:BAK68143.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_4126_18
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26003..27463)
DNA (1461bp) protein (487aa)
Uncharacterized protein n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0H0W1_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:EQB09941.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
putative outer membrane protein rbh
SCNpilot_expt_1000_bf_scaffold_4126_19
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27586..28794)
DNA (1209bp) protein (403aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9M0_NOVAD rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABD25453.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_expt_1000_bf_scaffold_4126_20
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28875..29279)
DNA (405bp) protein (135aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8SC74_9SPHN
PilZ domain-containing protein {ECO:0000313|EMBL:EZP73852.1}; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium resinovorum.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4126_21
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29433..30563
DNA (1131bp) protein (377aa)
TonB-dependent receptor, putative n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IIA1_9SPHN
TonB-dependent receptor {ECO:0000313|EMBL:GAO53881.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
TonB-dependent receptor
Displaying 21 items

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