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SCNpilot_expt_1000_bf_scaffold_4130

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4130_1
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..377
DNA (375bp) protein (125aa)
glutathione peroxidase (EC:1.11.1.9); K00432 glutathione peroxidase [EC:1.11.1.9]
Glutathione peroxidase n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0I022_9SPHN
Glutathione peroxidase {ECO:0000256|RuleBase:RU000499}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
SCNpilot_expt_1000_bf_scaffold_4130_2
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(403..3939)
DNA (3537bp) protein (1179aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YI84_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:CEG07881.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4130_3
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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4028..5059
DNA (1032bp) protein (344aa)
DNA-directed DNA polymerase {ECO:0000256|SAAS:SAAS00002518}; EC=2.7.7.7 {ECO:0000256|SAAS:SAAS00002518};; Flags: Fragment;; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
DNA polymerase III subunit alpha (EC:2.7.7.7); K02337 DNA polymerase III subunit alpha [EC:2.7.7.7]
DNA-directed DNA polymerase III PolC (Fragment) n=1 Tax=Novosphingobium sp. AP12 RepID=J3ANJ3_9SPHN
SCNpilot_expt_1000_bf_scaffold_4130_4
unknown

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comp(5056..5973)
DNA (918bp) protein (306aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4130_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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6322..6990
DNA (669bp) protein (223aa)
Sugar (And other) transporter family protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WT23_9SPHN
Permeases of the major facilitator superfamily {ECO:0000313|EMBL:GAO56232.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
major facilitator transporter
SCNpilot_expt_1000_bf_scaffold_4130_6
unknown

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7084..7539
DNA (456bp) protein (152aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4130_7
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7540..8619)
DNA (1080bp) protein (360aa)
Radical SAM n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G7G0_NOVAD rbh
radical SAM family protein rbh
Radical SAM {ECO:0000313|EMBL:ABD26213.1}; Flags: Precursor;; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_expt_1000_bf_scaffold_4130_8
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8876..9415)
DNA (540bp) protein (180aa)
Molybdopterin binding domain-containing protein n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IGS9_9SPHN
molybdopterin binding domain-containing protein; K03638 molybdenum cofactor biosynthesis protein B
Molybdenum cofactor biosynthesis protein B {ECO:0000256|PIRNR:PIRNR006443}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
SCNpilot_expt_1000_bf_scaffold_4130_9
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9405..11246)
DNA (1842bp) protein (614aa)
Lytic murein transglycosylase n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EHU0_9SPHN rbh
Lytic murein transglycosylase {ECO:0000313|EMBL:EHJ59074.1}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium pentaromativorans US6-1.;"
lytic murein transglycosylase rbh
SCNpilot_expt_1000_bf_scaffold_4130_10
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11204..11962)
DNA (759bp) protein (253aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8VM34_9SPHN
Uracil-DNA glycosylase {ECO:0000313|EMBL:GAO55697.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4130_11
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12077..13405
DNA (1329bp) protein (443aa)
electron-transferring-flavoprotein dehydrogenase (EC:1.5.5.1); K00311 electron-transferring-flavoprotein dehydrogenase [EC:1.5.5.1]
Putative electron-transferring-flavoprotein dehydrogenase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZZQ0_9SPHN
Putative electron-transferring-flavoprotein dehydrogenase {ECO:0000313|EMBL:GAD48003.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
SCNpilot_expt_1000_bf_scaffold_4130_12
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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13402..13716
DNA (315bp) protein (105aa)
Electron transfer flavoprotein-ubiquinone oxidoreductase {ECO:0000313|EMBL:GAO55698.1}; EC=1.5.5.1 {ECO:0000313|EMBL:GAO55698.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
electron-transferring-flavoprotein dehydrogenase (EC:1.5.5.1); K00311 electron-transferring-flavoprotein dehydrogenase [EC:1.5.5.1]
Electron-transferring-flavoprotein dehydrogenase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G7F2_NOVAD
SCNpilot_expt_1000_bf_scaffold_4130_13
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13755..14558
DNA (804bp) protein (268aa)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC:2.7.1.148); K00919 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148] rbh
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase {ECO:0000255|HAMAP-Rule:MF_00061}; Short=CMK {ECO:0000255|HAMAP-Rule:MF_00061};; EC=2.7.1.148 {ECO:0000255|HAMAP-Rule:MF_00061};; 4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase {ECO:0000255|HAMAP-Rule:MF_00061}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=ISPE_NOVAD rbh
SCNpilot_expt_1000_bf_scaffold_4130_14
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14528..15283
DNA (756bp) protein (252aa)
N-formylglutamate amidohydrolase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G7F0_NOVAD rbh
N-formylglutamate amidohydrolase {ECO:0000313|EMBL:KHS48293.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
N-formylglutamate amidohydrolase rbh
SCNpilot_expt_1000_bf_scaffold_4130_15
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15367..15939
DNA (573bp) protein (191aa)
hypothetical protein n=1 Tax=Caulobacter sp. JGI 0001010-J14 RepID=UPI0003661820
Uncharacterized protein {ECO:0000313|EMBL:EIZ80405.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
Displaying 15 items

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