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SCNpilot_expt_1000_bf_scaffold_4261

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4261_1
unknown

Not on your lists

comp(3..479)
DNA (477bp) protein (159aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4261_2
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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853..2097
DNA (1245bp) protein (415aa)
UPI0003D6659C related cluster n=1 Tax=unknown RepID=UPI0003D6659C rbh
Cytochrome P450 {ECO:0000313|EMBL:ETI61207.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
cytochrome P450
SCNpilot_expt_1000_bf_scaffold_4261_3
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2494..4113
DNA (1620bp) protein (540aa)
Sulphate transporter n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IMZ8_XANP2
sulfate transporter
Sulphate transporter {ECO:0000313|EMBL:ABS69391.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
SCNpilot_expt_1000_bf_scaffold_4261_4
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4110..5036
DNA (927bp) protein (309aa)
Uncharacterized protein n=1 Tax=Caulobacter crescentus OR37 RepID=R0EA78_CAUCE
Uncharacterized protein {ECO:0000313|EMBL:ENZ79024.1}; TaxID=1292034 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus OR37.;"
putative ParB-like nuclease
SCNpilot_expt_1000_bf_scaffold_4261_5
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5365..5931)
DNA (567bp) protein (189aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. AP12 RepID=J2PFQ0_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EJL26057.1}; Flags: Precursor;; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4261_6
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6049..7266
DNA (1218bp) protein (406aa)
MFS transporter n=1 Tax=Sphingobium ummariense RL-3 RepID=T0J357_9SPHN
MFS transporter {ECO:0000313|EMBL:EQB31257.1}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
putative tetracycline-efflux transporter; K08151 MFS transporter, DHA1 family, tetracycline resistance protein
SCNpilot_expt_1000_bf_scaffold_4261_7
Sphingobium lucknowense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8219..8527
DNA (309bp) protein (103aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PAMC 26617 RepID=UPI000288B884
Uncharacterized protein {ECO:0000313|EMBL:KER35555.1}; TaxID=1450518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lucknowense F2.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4261_8
R_Brevundimonas_68_13, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8530..8805)
DNA (276bp) protein (92aa)
Tax=RIFCSPHIGHO2_12_FULL_Brevundimonas_68_13_curated
SCNpilot_expt_1000_bf_scaffold_4261_9
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9760..10701
DNA (942bp) protein (314aa)
UvrABC system protein B n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YI44_9SPHN
UvrABC system protein B {ECO:0000256|HAMAP-Rule:MF_00204, ECO:0000256|RuleBase:RU003587}; Short=Protein UvrB {ECO:0000256|HAMAP-Rule:MF_00204};; Excinuclease ABC subunit B {ECO:0000256|HAMAP-Rule:MF_00204}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
excinuclease ABC subunit B; K03702 excinuclease ABC subunit B
SCNpilot_expt_1000_bf_scaffold_4261_10
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10773..11411
DNA (639bp) protein (213aa)
UPI0003D64087 related cluster n=1 Tax=unknown RepID=UPI0003D64087
Uncharacterised protein {ECO:0000313|EMBL:CKH35015.1}; TaxID=85698 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Alcaligenes xylosoxydans xylosoxydans (Achromobacter xylosoxidans).;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4261_11
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11438..11995)
DNA (558bp) protein (186aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EAG4_9SPHN
Scaffold3, whole genome shotgun sequence {ECO:0000313|EMBL:KIS33046.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4261_12
unknown

Not on your lists

comp(11999..12178)
DNA (180bp) protein (60aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4261_13
Sphingobium sp. AP49, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12189..13118)
DNA (930bp) protein (310aa)
Transcriptional regulator n=1 Tax=Sphingobium sp. AP49 RepID=J2D7Z6_9SPHN
Transcriptional regulator {ECO:0000313|EMBL:EJK85929.1}; TaxID=1144307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. AP49.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4261_14
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13238..14041
DNA (804bp) protein (268aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. AP12 RepID=J2ZXP7_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:EJL24111.1}; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
short-chain dehydrogenase/reductase SDR
SCNpilot_expt_1000_bf_scaffold_4261_15
Mycobacterium nebraskense, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14049..14564
DNA (516bp) protein (172aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8VFW7_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KKC05884.1}; TaxID=244292 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium nebraskense.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4261_16
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14604..15614
DNA (1011bp) protein (337aa)
Flavin-dependent oxidoreductase, methylene-tetrahydromethanopterin reductase n=1 Tax=Novosphingobium sp. AP12 RepID=J2GN07_9SPHN rbh
Oxidoreductase {ECO:0000313|EMBL:KHK89473.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_4261_17
Sphingobium sp. AP49, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15614..15781
DNA (168bp) protein (56aa)
Theronine dehydrogenase-like Zn-dependent dehydrogenase n=1 Tax=Sphingobium sp. AP49 RepID=J2LEL1_9SPHN
Theronine dehydrogenase-like Zn-dependent dehydrogenase {ECO:0000313|EMBL:EJK85926.1}; TaxID=1144307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. AP49.;"
Displaying 17 items

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