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SCNpilot_expt_1000_bf_scaffold_4420

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4420_1
Mesorhizobium sp. L103C120A0, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..859)
DNA (858bp) protein (286aa)
Alpha-1,4 polygalactosaminidase n=1 Tax=Mesorhizobium sp. L103C120A0 RepID=V7HRY1_9RHIZ rbh
Alpha-1,4 polygalactosaminidase {ECO:0000313|EMBL:ESZ66072.1}; TaxID=1287086 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L103C120A0.;"
endonuclease, Z1 domain-containing protein
SCNpilot_expt_1000_bf_scaffold_4420_2
Mesorhizobium sp. L103C120A0, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(925..1410)
DNA (486bp) protein (162aa)
Alpha-1,4 polygalactosaminidase n=1 Tax=Mesorhizobium sp. L103C120A0 RepID=V7HRY1_9RHIZ
Alpha-1,4 polygalactosaminidase {ECO:0000313|EMBL:ESZ66072.1}; TaxID=1287086 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L103C120A0.;"
endonuclease, Z1 domain-containing protein
SCNpilot_expt_1000_bf_scaffold_4420_3
Mesorhizobium sp. L103C120A0, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2566..4185)
DNA (1620bp) protein (540aa)
DNA-cytosine methyltransferase; K00558 DNA (cytosine-5-)-methyltransferase [EC:2.1.1.37] rbh
DNA-cytosine methyltransferase n=1 Tax=Mesorhizobium sp. L103C120A0 RepID=V7HNU8_9RHIZ rbh
DNA-cytosine methyltransferase {ECO:0000313|EMBL:ESZ66071.1}; TaxID=1287086 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L103C120A0.;"
SCNpilot_expt_1000_bf_scaffold_4420_4
Mesorhizobium sp. L103C120A0, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4253..4720
DNA (468bp) protein (156aa)
DNA mismatch endonuclease vsr; K07458 DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
DNA mismatch repair protein Vsr n=1 Tax=Mesorhizobium sp. L103C120A0 RepID=V7HRR4_9RHIZ
DNA mismatch repair protein Vsr {ECO:0000313|EMBL:ESZ66070.1}; TaxID=1287086 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L103C120A0.;"
SCNpilot_expt_1000_bf_scaffold_4420_5
Mesorhizobium sp. L103C120A0, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4837..5460
DNA (624bp) protein (208aa)
Transcriptional regulator n=1 Tax=Mesorhizobium sp. L103C120A0 RepID=V7HPU5_9RHIZ rbh
Transcriptional regulator {ECO:0000313|EMBL:ESZ66069.1}; TaxID=1287086 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L103C120A0.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4420_6
Mesorhizobium sp. L103C120A0, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5453..6319
DNA (867bp) protein (289aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. L103C120A0 RepID=V7HSE2_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ESZ66068.1}; TaxID=1287086 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L103C120A0.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4420_7
Serratia sp. DD3, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6403..7908)
DNA (1506bp) protein (502aa)
Uncharacterized protein n=1 Tax=Thauera sp. 27 RepID=N6XH09_9RHOO
Uncharacterized protein {ECO:0000313|EMBL:KEY58967.1}; TaxID=1410619 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia sp. DD3.;"
SCNpilot_expt_1000_bf_scaffold_4420_8
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8226..9992
DNA (1767bp) protein (589aa)
Uncharacterized protein n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0HBP3_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:EQB13751.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
SCNpilot_expt_1000_bf_scaffold_4420_9
Brevundimonas sp. KM4, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10506..11123
DNA (618bp) protein (206aa)
membrane protein n=1 Tax=alpha proteobacterium L41A RepID=UPI000378BB2A
Membrane protein {ECO:0000313|EMBL:KJV38429.1}; TaxID=1628191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas sp. KM4.;"
PepSY-associated TM helix domain-containing protein; K09939 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4420_10
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11140..11640
DNA (501bp) protein (167aa)
Uncharacterized protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WTE3_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EAQ36813.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4420_11
Asticcacaulis sp. AC460, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11643..12677
DNA (1035bp) protein (345aa)
Uncharacterized protein n=1 Tax=Asticcacaulis sp. AC460 RepID=V4Q0B5_9CAUL
Uncharacterized protein {ECO:0000313|EMBL:ESQ91270.1}; TaxID=1282360 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis sp. AC460.;"
apbe family lipoprotein; K03734 thiamine biosynthesis lipoprotein
SCNpilot_expt_1000_bf_scaffold_4420_12
Brevundimonas subvibrioides, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12670..13146
DNA (477bp) protein (159aa)
flavodoxin/nitric oxide synthase; K00380 sulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2]
Flavodoxin/nitric oxide synthase n=1 Tax=Brevundimonas subvibrioides (strain ATCC 15264 / DSM 4735 / LMG 14903 / NBRC 16000 / CB 81) RepID=D9QP06_BRESC
Flavodoxin/nitric oxide synthase {ECO:0000313|EMBL:ADL00439.1}; TaxID=633149 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas subvibrioides (strain ATCC 15264 / DSM 4735 / LMG 14903; / NBRC 16000 / CB 81) (Caulobacter subvibrioides).;"
SCNpilot_expt_1000_bf_scaffold_4420_13
Asticcacaulis sp. AC466, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13162..13992
DNA (831bp) protein (277aa)
flavodoxin/nitric oxide synthase; K00380 sulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2]
Uncharacterized protein n=1 Tax=Asticcacaulis sp. AC466 RepID=V4PFS5_9CAUL
Uncharacterized protein {ECO:0000313|EMBL:ESQ84150.1}; TaxID=1282362 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis sp. AC466.;"
SCNpilot_expt_1000_bf_scaffold_4420_14
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14104..16098
DNA (1995bp) protein (665aa)
Outer membrane receptor for ferrienterochelin and colicin n=1 Tax=Novosphingobium sp. AP12 RepID=J2PHQ1_9SPHN
Outer membrane receptor for ferrienterochelin and colicin {ECO:0000313|EMBL:EJL26832.1}; Flags: Precursor;; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
TonB-dependent receptor plug; K02014 iron complex outermembrane recepter protein
SCNpilot_expt_1000_bf_scaffold_4420_15
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16173..16922
DNA (750bp) protein (250aa)
TonB family protein n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9L9F6_9SPHN
TonB family protein {ECO:0000313|EMBL:EIZ81149.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
TonB-like protein; K03832 periplasmic protein TonB
SCNpilot_expt_1000_bf_scaffold_4420_16
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17020..17826
DNA (807bp) protein (269aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8SJ56_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:EJU12804.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4420_17
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17856..18377
DNA (522bp) protein (174aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9CB47_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EIZ81147.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4420_18
Kirrobacter mercurialis, Kirrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18422..19282)
DNA (861bp) protein (287aa)
structural protein MipA n=1 Tax=Sphingopyxis baekryungensis RepID=UPI0003B3B463
Uncharacterized protein {ECO:0000313|EMBL:KHL26479.1}; TaxID=1572751 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Kirrobacter.;" source="Kirrobacter mercurialis.;"
MltA-interacting MipA
SCNpilot_expt_1000_bf_scaffold_4420_19
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19357..20214)
DNA (858bp) protein (286aa)
structural protein MipA n=1 Tax=Citromicrobium bathyomarinum RepID=UPI0001DD055E
MltA-interacting protein MipA {ECO:0000313|EMBL:AKH44042.1}; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
MltA-interacting MipA
SCNpilot_expt_1000_bf_scaffold_4420_20
unknown

Not on your lists

20393..20677
DNA (285bp) protein (95aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4420_21
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20855..22930)
DNA (2076bp) protein (692aa)
Anaerobic dehydrogenase, typically selenocysteine-containing n=1 Tax=Novosphingobium sp. AP12 RepID=J3AQ65_9SPHN rbh
Anaerobic dehydrogenase, typically selenocysteine-containing {ECO:0000313|EMBL:EJL35049.1}; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
molybdopterin oxidoreductase rbh
SCNpilot_expt_1000_bf_scaffold_4420_22
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23125..23841
DNA (717bp) protein (239aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IPI5_9SPHN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCA93337.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
SCNpilot_expt_1000_bf_scaffold_4420_23
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23955..24539)
DNA (585bp) protein (195aa)
UPF0314 protein NT2_10_00540 n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZYZ2_9SPHN
UPF0314 protein NT2_10_00540 {ECO:0000256|HAMAP-Rule:MF_01514}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4420_24
Gluconacetobacter diazotrophicus, Gluconacetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24536..25102)
DNA (567bp) protein (189aa)
N-acetyltransferase GCN5; K03823 phosphinothricin acetyltransferase [EC:2.3.1.183]
GCN5-related N-acetyltransferase n=2 Tax=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) RepID=B5ZH13_GLUDA
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:ACI50980.1}; TaxID=272568 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconacetobacter.;" source="Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 /; PAl5).;"
SCNpilot_expt_1000_bf_scaffold_4420_25
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25233..26711
DNA (1479bp) protein (493aa)
phytoene dehydrogenase (EC:1.14.99.-); K10027 phytoene desaturase [EC:1.3.99.26 1.3.99.28 1.3.99.29 1.3.99.31]
phytoene dehydrogenase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B527E3
Phytoene dehydrogenase {ECO:0000313|EMBL:GAO56543.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
SCNpilot_expt_1000_bf_scaffold_4420_26
Tolypothrix campylonemoides, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(26612..27193)
DNA (582bp) protein (194aa)
Putative uncharacterized protein n=1 Tax=Oryza sativa subsp. japonica RepID=B9FV16_ORYSJ
Uncharacterized protein {ECO:0000313|EMBL:KIJ71747.1}; TaxID=1245935 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix campylonemoides VB511288.;"
SCNpilot_expt_1000_bf_scaffold_4420_27
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27362..28810)
DNA (1449bp) protein (483aa)
Glycerol-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361217}; EC=1.1.5.3 {ECO:0000256|RuleBase:RU361217};; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium resinovorum.;"
glpD; glycerol-3-phosphate dehydrogenase (EC:1.1.5.3); K00111 glycerol-3-phosphate dehydrogenase [EC:1.1.5.3] rbh
hypothetical protein n=1 Tax=Porphyrobacter sp. AAP82 RepID=UPI0002D28958
SCNpilot_expt_1000_bf_scaffold_4420_28
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28807..30060)
DNA (1254bp) protein (418aa)
Putative drug resistance transporter n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A778_9SPHN rbh
Putative drug resistance transporter {ECO:0000313|EMBL:GAD50603.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
MFS transporter DHA1 family bicyclomycin/chloramphenicol resistance protein; K07552 MFS transporter, DHA1 family, bicyclomycin/chloramphenicol resistance protein rbh
SCNpilot_expt_1000_bf_scaffold_4420_29
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30107..30445
DNA (339bp) protein (113aa)
DNA polymerase IV {ECO:0000256|HAMAP-Rule:MF_01113}; Short=Pol IV {ECO:0000256|HAMAP-Rule:MF_01113};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01113};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
DNA polymerase IV (EC:2.7.7.7); K02346 DNA polymerase IV [EC:2.7.7.7]
DNA polymerase IV n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0JCV7_9SPHN
SCNpilot_expt_1000_bf_scaffold_4420_30
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30469..31221
DNA (753bp) protein (251aa)
DNA polymerase IV {ECO:0000256|HAMAP-Rule:MF_01113}; Short=Pol IV {ECO:0000256|HAMAP-Rule:MF_01113};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01113};; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
DNA polymerase IV (EC:2.7.7.7); K02346 DNA polymerase IV [EC:2.7.7.7]
DNA polymerase IV n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9L1R9_9SPHN
Displaying items 1-30 of 31 in total

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