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SCNpilot_expt_1000_bf_scaffold_4496

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Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4496_1
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(355..1200)
DNA (846bp) protein (282aa)
S-methyl-5'-thioadenosine phosphorylase {ECO:0000256|HAMAP-Rule:MF_01963}; EC=2.4.2.28 {ECO:0000256|HAMAP-Rule:MF_01963};; 5'-methylthioadenosine phosphorylase {ECO:0000256|HAMAP-Rule:MF_01963}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
5'-methylthioadenosine phosphorylase (EC:2.4.2.28); K00772 5'-methylthioadenosine phosphorylase [EC:2.4.2.28]
S-methyl-5'-thioadenosine phosphorylase n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0INV3_9SPHN
SCNpilot_expt_1000_bf_scaffold_4496_2
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1197..1823)
DNA (627bp) protein (209aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. AP12 RepID=J2ZPU3_9SPHN
TetR family transcriptional regulator {ECO:0000313|EMBL:KHS43977.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
TetR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_4496_3
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1850..2635)
DNA (786bp) protein (262aa)
3-hydroxy-2-methylbutyryl-CoA dehydrogenase n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0HMT8_9SPHN rbh
3-hydroxy-2-methylbutyryl-CoA dehydrogenase {ECO:0000313|EMBL:EQB13503.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
short-chain dehydrogenase/reductase SDR rbh
SCNpilot_expt_1000_bf_scaffold_4496_4
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2759..3523)
DNA (765bp) protein (255aa)
Uncharacterized protein n=1 Tax=Mycobacterium rhodesiae (strain NBB3) RepID=G8RYB6_MYCRN
Uncharacterized protein {ECO:0000313|EMBL:KHK93170.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
dehydrogenase
SCNpilot_expt_1000_bf_scaffold_4496_5
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3640..4428
DNA (789bp) protein (263aa)
Methylase involved in ubiquinone/menaquinone biosynthesis n=1 Tax=Novosphingobium sp. AP12 RepID=J2Q374_9SPHN
Methylase involved in ubiquinone/menaquinone biosynthesis {ECO:0000313|EMBL:EJL34582.1}; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
type 11 methyltransferase
SCNpilot_expt_1000_bf_scaffold_4496_6
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4562..5581)
DNA (1020bp) protein (340aa)
transketolase, central region; K00162 pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] rbh
Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase component beta subunit n=1 Tax=Novosphingobium sp. AP12 RepID=J3AQK0_9SPHN rbh
Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase component beta subunit {ECO:0000313|EMBL:EJL35319.1}; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
SCNpilot_expt_1000_bf_scaffold_4496_7
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5578..6576)
DNA (999bp) protein (333aa)
pyruvate dehydrogenase (EC:1.2.4.1); K00161 pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] rbh
Pyruvate dehydrogenase n=1 Tax=Sphingomonas sp. LH128 RepID=J8VWC0_9SPHN rbh
Pyruvate dehydrogenase {ECO:0000313|EMBL:EJU12328.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
SCNpilot_expt_1000_bf_scaffold_4496_8
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6983..8659)
DNA (1677bp) protein (559aa)
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II n=1 Tax=Novosphingobium sp. AP12 RepID=J3APN2_9SPHN rbh
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II {ECO:0000313|EMBL:EJL35321.1}; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
AMP-dependent synthetase and ligase
SCNpilot_expt_1000_bf_scaffold_4496_9
Sphingobium sp. AP49, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8656..9957)
DNA (1302bp) protein (434aa)
Rieske (2Fe-2S) domain-containing protein n=1 Tax=Sphingobium sp. AP49 RepID=J2WIT0_9SPHN rbh
Rieske (2Fe-2S) domain-containing protein {ECO:0000313|EMBL:EJK82585.1}; TaxID=1144307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. AP49.;"
Rieske (2Fe-2S) domain-containing protein
SCNpilot_expt_1000_bf_scaffold_4496_10
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10213..11202
DNA (990bp) protein (330aa)
Zn-dependent oxidoreductase, NADPH:quinone reductase n=1 Tax=Novosphingobium sp. AP12 RepID=J2Q554_9SPHN rbh
Zn-dependent oxidoreductase, NADPH:quinone reductase {ECO:0000313|EMBL:EJL35322.1}; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
zinc-binding dehydrogenase family oxidoreductase
SCNpilot_expt_1000_bf_scaffold_4496_11
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11225..11671)
DNA (447bp) protein (149aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. AP12 RepID=J3AQK2_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EJL35324.1}; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4496_12
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11680..13356)
DNA (1677bp) protein (559aa)
Succinate dehydrogenase/fumarate reductase flavoprotein subunit n=1 Tax=Novosphingobium sp. AP12 RepID=J2GXV2_9SPHN rbh
Succinate dehydrogenase/fumarate reductase flavoprotein subunit {ECO:0000313|EMBL:EJL35325.1}; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
3-ketosteroid-delta-1-dehydrogenase rbh
SCNpilot_expt_1000_bf_scaffold_4496_13
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13528..13983
DNA (456bp) protein (152aa)
enoyl-CoA hydratase/isomerase; K01692 enoyl-CoA hydratase [EC:4.2.1.17]
Enoyl-CoA hydratase/carnithine racemase n=1 Tax=Novosphingobium sp. AP12 RepID=J3APN6_9SPHN
Enoyl-CoA hydratase/carnithine racemase {ECO:0000313|EMBL:EJL35326.1}; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
SCNpilot_expt_1000_bf_scaffold_4496_14
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13980..14321
DNA (342bp) protein (114aa)
enoyl-CoA hydratase/isomerase; K01692 enoyl-CoA hydratase [EC:4.2.1.17]
enoyl-CoA hydratase n=1 Tax=Sphingobium yanoikuyae RepID=UPI000262BBED
Enoyl-CoA hydratase {ECO:0000313|EMBL:KHK91190.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
SCNpilot_expt_1000_bf_scaffold_4496_15
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14466..14798)
DNA (333bp) protein (111aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. AP12 RepID=J2Q559_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KHK91188.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4496_16
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14811..17759)
DNA (2949bp) protein (983aa)
Indolepyruvate ferredoxin oxidreductase, alpha/beta subunit n=1 Tax=Novosphingobium sp. AP12 RepID=J2ZZM1_9SPHN rbh
Pyruvate ferredoxin oxidoreductase {ECO:0000313|EMBL:KHK89476.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
pyruvate ferredoxin/flavodoxin oxidoreductase
SCNpilot_expt_1000_bf_scaffold_4496_17
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18367..19398)
DNA (1032bp) protein (344aa)
DNA-binding domain-containing protein, AraC-type n=1 Tax=Novosphingobium sp. AP12 RepID=J2HI28_9SPHN rbh
AraC family transcriptional regulator {ECO:0000313|EMBL:KHK91187.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
AraC family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_4496_18
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19562..19900)
DNA (339bp) protein (113aa)
Excinuclease ABC, C subunit-like protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2GA64_NOVAD
excinuclease ABC subunit C; K07461 putative endonuclease
Excinuclease ABC, C subunit-like protein {ECO:0000313|EMBL:ABD25259.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_expt_1000_bf_scaffold_4496_19
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19983..20297)
DNA (315bp) protein (105aa)
Enoyl-CoA hydratase/carnithine racemase n=1 Tax=Novosphingobium sp. AP12 RepID=J3AQK5_9SPHN
Enoyl-CoA hydratase/carnithine racemase {ECO:0000313|EMBL:EJL35329.1}; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
enoyl-CoA hydratase/isomerase
SCNpilot_expt_1000_bf_scaffold_4496_20
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20321..20944)
DNA (624bp) protein (208aa)
Enoyl-CoA hydratase/carnithine racemase n=1 Tax=Novosphingobium sp. AP12 RepID=J3AQK5_9SPHN rbh
Enoyl-CoA hydratase/carnithine racemase {ECO:0000313|EMBL:EJL35329.1}; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
enoyl-CoA hydratase/isomerase
SCNpilot_expt_1000_bf_scaffold_4496_21
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21120..22172
DNA (1053bp) protein (351aa)
DNA-binding domain-containing protein, AraC-type n=1 Tax=Novosphingobium sp. AP12 RepID=J2GXV6_9SPHN rbh
AraC family transcriptional regulator {ECO:0000313|EMBL:KHK91185.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
AraC family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_4496_22
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22195..23169)
DNA (975bp) protein (325aa)
Zn-dependent oxidoreductase, NADPH:quinone reductase n=1 Tax=Novosphingobium sp. AP12 RepID=J2Q564_9SPHN rbh
Zn-dependent oxidoreductase, NADPH:quinone reductase {ECO:0000313|EMBL:EJL35332.1}; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
zinc-binding alcohol dehydrogenase rbh
SCNpilot_expt_1000_bf_scaffold_4496_23
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23169..23909)
DNA (741bp) protein (247aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Sphingomonas sp. LH128 RepID=J8VGX7_9SPHN rbh
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:EZP83308.1}; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium resinovorum.;"
short-chain dehydrogenase/reductase SDR rbh
SCNpilot_expt_1000_bf_scaffold_4496_24
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23912..25213)
DNA (1302bp) protein (434aa)
acyl-CoA dehydrogenase-like protein; K00249 acyl-CoA dehydrogenase [EC:1.3.99.3] rbh
Acyl-CoA dehydrogenase-like protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8VX96_9SPHN rbh
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:KHK91181.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
SCNpilot_expt_1000_bf_scaffold_4496_25
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25255..25701)
DNA (447bp) protein (149aa)
Aminoglycoside phosphotransferase n=1 Tax=Sphingomonas sp. LH128 RepID=J8VN62_9SPHN
Aminoglycoside phosphotransferase {ECO:0000313|EMBL:KHK91180.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
aminoglycoside phosphotransferase
SCNpilot_expt_1000_bf_scaffold_4496_26
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25801..26334)
DNA (534bp) protein (178aa)
Putative aminoglycoside phosphotransferase n=1 Tax=Novosphingobium sp. AP12 RepID=J2GXW1_9SPHN rbh
Aminoglycoside phosphotransferase {ECO:0000313|EMBL:KHK91180.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
aminoglycoside phosphotransferase
SCNpilot_expt_1000_bf_scaffold_4496_27
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26331..26810)
DNA (480bp) protein (160aa)
MarR family transcriptional regulator n=1 Tax=Sphingomonas sp. LH128 RepID=J8SGS9_9SPHN
Transcriptional regulator {ECO:0000313|EMBL:KHK91179.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
MarR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_4496_28
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28278..28508)
DNA (231bp) protein (77aa)
Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase component n=1 Tax=Novosphingobium sp. AP12 RepID=J3AMB0_9SPHN
Scaffold6, whole genome shotgun sequence {ECO:0000313|EMBL:KIS32025.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
biotin/lipoyl attachment domain-containing protein
SCNpilot_expt_1000_bf_scaffold_4496_29
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28572..29399)
DNA (828bp) protein (276aa)
Acid phosphatase {ECO:0000256|PIRNR:PIRNR000897}; EC=3.1.3.2 {ECO:0000256|PIRNR:PIRNR000897};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
acid phosphatase (EC:3.1.3.2); K09474 acid phosphatase (class A) [EC:3.1.3.2]
Putative acid phosphatase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZVZ7_9SPHN
SCNpilot_expt_1000_bf_scaffold_4496_30
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29430..30287)
DNA (858bp) protein (286aa)
acid phosphatase (EC:3.1.3.2); K09474 acid phosphatase (class A) [EC:3.1.3.2]
Acid phosphatase {ECO:0000256|PIRNR:PIRNR000897}; EC=3.1.3.2 {ECO:0000256|PIRNR:PIRNR000897};; Flags: Precursor;; TaxID=690566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum L-1.;"
Acid phosphatase n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6F0K0_SPHCR
Displaying items 1-30 of 38 in total

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