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SCNpilot_expt_1000_bf_scaffold_4513

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4513_1
Pseudomonas sp. 1-7, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3..944
DNA (942bp) protein (314aa)
Uncharacterized protein n=2 Tax=Pseudomonas aeruginosa RepID=U8XVR9_PSEAI
DEAD/DEAH box helicase {ECO:0000313|EMBL:KFJ91533.1}; TaxID=633150 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. 1-7.;"
plasmid-like protein
SCNpilot_expt_1000_bf_scaffold_4513_2
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1071..1691
DNA (621bp) protein (207aa)
Uncharacterized protein n=1 Tax=Thauera sp. (strain MZ1T) RepID=C4ZN87_THASP
Integrating conjugative element protein PilL {ECO:0000313|EMBL:GAO21701.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
hypothetical protein; K02487 type IV pili sensor histidine kinase and response regulator
SCNpilot_expt_1000_bf_scaffold_4513_3
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1688..2482
DNA (795bp) protein (265aa)
Uncharacterized protein n=1 Tax=Ralstonia pickettii (strain 12D) RepID=C6BE10_RALP1
Uncharacterized protein {ECO:0000313|EMBL:GAO21702.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4513_4
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2608..3030
DNA (423bp) protein (141aa)
Integrating conjugative element protein, PFL_4693 family n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G6H7_ALIDK
Putative exported protein {ECO:0000313|EMBL:GAO21703.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
integrating conjugative element protein
SCNpilot_expt_1000_bf_scaffold_4513_5
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3015..3605
DNA (591bp) protein (197aa)
Uncharacterized protein n=4 Tax=Proteobacteria RepID=S2WZ64_DELAC
Soluble lytic murein transglycosylase {ECO:0000313|EMBL:GAO21704.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
lytic transglycosylase catalytic subunit
SCNpilot_expt_1000_bf_scaffold_4513_6
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3602..4162
DNA (561bp) protein (187aa)
Integrating conjugative element protein n=1 Tax=Ralstonia pickettii DTP0602 RepID=U3QKQ8_RALPI
Integrating conjugative element protein {ECO:0000313|EMBL:GAO21705.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4513_7
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4570..6324
DNA (1755bp) protein (585aa)
conjugal transfer protein TraG n=1 Tax=Pseudomonas putida RepID=UPI000310B4A0
Type IV secretory pathway, VirD4 components {ECO:0000313|EMBL:GAO21706.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4513_8
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6482..7045
DNA (564bp) protein (188aa)
Integrating conjugative element membrane protein, PFL_4697 family n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G6I1_ALIDK
Integrating conjugative element membrane protein {ECO:0000313|EMBL:GAO21707.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
integrating conjugative element membrane protein
SCNpilot_expt_1000_bf_scaffold_4513_9
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(7207..8232)
DNA (1026bp) protein (342aa)
arsenic transporter n=1 Tax=Methyloversatilis sp. NVD RepID=UPI000373836F rbh
Arsenic transporter {ECO:0000313|EMBL:KGH27076.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas testosteroni).;"
sodium bile acid symporter family protein; K03325 arsenite transporter, ACR3 family
SCNpilot_expt_1000_bf_scaffold_4513_10
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8502..8798)
DNA (297bp) protein (99aa)
arsenate reductase, putative; K03741 arsenate reductase [EC:1.20.4.1]
Arsenate reductase, putative n=1 Tax=Pseudomonas stutzeri (strain A1501) RepID=A4VG42_PSEU5
Arsenate reductase, putative {ECO:0000313|EMBL:ABP77943.1}; TaxID=379731 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri (strain A1501).;"
SCNpilot_expt_1000_bf_scaffold_4513_11
Burkholderiales bacterium GJ-E10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(8800..10572)
DNA (1773bp) protein (591aa)
arsenical pump-driving ATPase; K01551 arsenite-transporting ATPase [EC:3.6.3.16]
Arsenical pump-driving ATPase n=1 Tax=Pseudomonas stutzeri (strain A1501) RepID=A4VG43_PSEU5
Arsenical pump-driving ATPase {ECO:0000313|EMBL:BAP88813.1}; TaxID=1469502 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium GJ-E10.;"
SCNpilot_expt_1000_bf_scaffold_4513_12
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10588..10947)
DNA (360bp) protein (120aa)
Arsenic operon regulator n=1 Tax=Pseudomonas stutzeri (strain A1501) RepID=A4VG44_PSEU5
arsenic operon regulator
Arsenic operon regulator {ECO:0000313|EMBL:ABP77945.1}; TaxID=379731 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri (strain A1501).;"
SCNpilot_expt_1000_bf_scaffold_4513_13
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10965..11402)
DNA (438bp) protein (146aa)
Uncharacterized protein n=1 Tax=Pseudomonas stutzeri (strain A1501) RepID=A4VG45_PSEU5
protein-tyrosine phosphatase
Uncharacterized protein {ECO:0000313|EMBL:ABP77946.1}; TaxID=379731 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri (strain A1501).;"
SCNpilot_expt_1000_bf_scaffold_4513_14
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11427..11906)
DNA (480bp) protein (160aa)
arsC-3; arsenate reductase; K03741 arsenate reductase [EC:1.20.4.1]
Arsenate reductase n=1 Tax=Pseudomonas stutzeri (strain A1501) RepID=A4VG46_PSEU5
Arsenate reductase {ECO:0000313|EMBL:ABP77947.1}; TaxID=379731 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri (strain A1501).;"
SCNpilot_expt_1000_bf_scaffold_4513_15
Burkholderiales bacterium GJ-E10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11903..12280)
DNA (378bp) protein (126aa)
Arsenic resistance transcriptional regulator n=1 Tax=Pseudomonas stutzeri (strain A1501) RepID=A4VG47_PSEU5
ArsR family transcriptional regulator {ECO:0000313|EMBL:BAP88817.1}; TaxID=1469502 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium GJ-E10.;"
arsenic resistance transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_4513_16
RIFOXYC12_FULL_Burkholderiales_65_23_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12691..13491)
DNA (801bp) protein (267aa)
HipA domain-containing protein; K07154 serine/threonine-protein kinase HipA [EC:2.7.11.1]
phosphatidylinositol kinase n=1 Tax=Rhodocyclaceae bacterium RZ94 RepID=UPI00037151F8
Tax=RIFOXYC12_FULL_Burkholderiales_65_23_curated
Displaying 16 items

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