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SCNpilot_expt_1000_bf_scaffold_4769

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4769_1
Sphingobium herbicidovorans, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..1086)
DNA (1086bp) protein (362aa)
Permease n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0ISI6_9SPHN
Permease {ECO:0000313|EMBL:KFG89619.1}; TaxID=1219045 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium herbicidovorans (strain ATCC 700291 / DSM 11019 / NBRC; 16415 / MH) (Sphingomonas herbicidovorans).;"
TrkA domain-containing protein
SCNpilot_expt_1000_bf_scaffold_4769_2
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1083..1517)
DNA (435bp) protein (145aa)
Uncharacterized protein n=1 Tax=Sphingobium ummariense RL-3 RepID=T0K3D6_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB31089.1}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
hypothetical protein; K00389 putative membrane protein
SCNpilot_expt_1000_bf_scaffold_4769_3
alpha proteobacterium U9-1i, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1588..1746)
DNA (159bp) protein (53aa)
Enoyl-CoA hydratase {ECO:0000313|EMBL:GAM99972.1}; EC=4.2.1.17 {ECO:0000313|EMBL:GAM99972.1};; TaxID=1605283 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium U9-1i.;"
SCNpilot_expt_1000_bf_scaffold_4769_4
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2304..2990)
DNA (687bp) protein (229aa)
Uroporphyrin-III C-methyltransferase {ECO:0000313|EMBL:KHS41694.1}; EC=1.3.1.76 {ECO:0000313|EMBL:KHS41694.1};; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
uroporphyrin-III C-methyltransferase (EC:1.3.1.76 2.1.1.107 4.99.1.4); K02302 uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4]
Uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EEA0_9SPHN
SCNpilot_expt_1000_bf_scaffold_4769_5
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3059..5695)
DNA (2637bp) protein (879aa)
nitrate reductase; K00372 nitrate reductase catalytic subunit [EC:1.7.99.4]
nitrate reductase n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI00035C8F0D
Nitrate reductase {ECO:0000313|EMBL:AJP73376.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_1000_bf_scaffold_4769_6
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5697..6053)
DNA (357bp) protein (119aa)
nitrite reductase (NAD(P)H) large subunit, NirD; K00363 nitrite reductase (NAD(P)H) small subunit [EC:1.7.1.4]
Nitrite reductase n=1 Tax=Sphingobium baderi LL03 RepID=T0I962_9SPHN
Nitrite reductase {ECO:0000313|EMBL:EQB06159.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
SCNpilot_expt_1000_bf_scaffold_4769_7
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6050..8509)
DNA (2460bp) protein (820aa)
Assimilatory nitrite reductase (NAD(P)H) large subunit {ECO:0000313|EMBL:KHS41691.1}; EC=1.7.1.4 {ECO:0000313|EMBL:KHS41691.1};; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
assimilatory nitrite reductase (NAD(P)H) large subunit (EC:1.7.1.4); K00362 nitrite reductase (NAD(P)H) large subunit [EC:1.7.1.4] rbh
Assimilatory nitrite reductase (NAD(P)H) large subunit n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G420_NOVAD rbh
SCNpilot_expt_1000_bf_scaffold_4769_8
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8741..10012)
DNA (1272bp) protein (424aa)
Major facilitator superfamily MFS_1 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G418_NOVAD rbh
major facilitator transporter; K02575 MFS transporter, NNP family, nitrate/nitrite transporter rbh
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ABD27405.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_expt_1000_bf_scaffold_4769_9
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10234..11427)
DNA (1194bp) protein (398aa)
ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component n=1 Tax=Novosphingobium sp. AP12 RepID=J3AHH5_9SPHN rbh
ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component {ECO:0000313|EMBL:EJL31304.1}; Flags: Precursor;; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
nitrate transporter component, nrtA; K02049 NitT/TauT family transport system ATP-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_4769_10
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11427..12065)
DNA (639bp) protein (213aa)
chemotaxis protein CheY n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B4B314 rbh
Chemotaxis protein CheY {ECO:0000313|EMBL:KHK93225.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
response regulator receiver/ANTAR domain-containing protein; K07183 response regulator NasT rbh
SCNpilot_expt_1000_bf_scaffold_4769_11
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12192..13067
DNA (876bp) protein (292aa)
Uncharacterized protein {ECO:0000313|EMBL:AJP71516.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_1000_bf_scaffold_4769_12
Methylobacterium mesophilicum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13131..14261)
DNA (1131bp) protein (377aa)
Uncharacterized protein n=1 Tax=Methylobacterium mesophilicum SR1.6/6 RepID=M7YQQ1_9RHIZ
two component transcriptional regulator, LuxR family
Uncharacterized protein {ECO:0000313|EMBL:EMS39059.1}; TaxID=908290 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium mesophilicum SR1.6/6.;"
SCNpilot_expt_1000_bf_scaffold_4769_13
bacterium YEK0313, Bacteria

Not on your lists

14490..17399
DNA (2910bp) protein (970aa)
outer membrane autotransporter barrel domain-containing protein n=1 Tax=Sphingomonas echinoides RepID=UPI00026CBCF9 rbh
Extracellular serine protease {ECO:0000313|EMBL:CEJ12595.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
outer membrane autotransporter
Displaying 13 items

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