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SCNpilot_expt_1000_bf_scaffold_4861

Search features with annotation key words

Displaying items 1-30 of 40 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4861_1
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..300)
DNA (300bp) protein (100aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZZ49_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAD50669.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4861_2
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(302..1108)
DNA (807bp) protein (269aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YP40_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:GAD50670.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_4861_3
R_Sphingopyxis_65_24, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1269..1748
DNA (480bp) protein (160aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WBZ9_9SPHN
transcriptional regulator
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
SCNpilot_expt_1000_bf_scaffold_4861_4
unknown

Not on your lists

comp(1759..1926)
DNA (168bp) protein (56aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4861_5
Mycobacterium parascrofulaceum, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1883..2662)
DNA (780bp) protein (260aa)
Arylsulfatase {ECO:0000313|EMBL:EFG79052.1}; EC=3.1.6.- {ECO:0000313|EMBL:EFG79052.1};; TaxID=525368 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium parascrofulaceum ATCC BAA-614.;"
sulfatase; K01130 arylsulfatase [EC:3.1.6.1]
Arylsulfatase n=1 Tax=Mycobacterium parascrofulaceum ATCC BAA-614 RepID=D5P455_9MYCO
SCNpilot_expt_1000_bf_scaffold_4861_6
unknown

Not on your lists

2721..4103
DNA (1383bp) protein (461aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4861_7
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4396..5151
DNA (756bp) protein (252aa)
Sulfotransferase family protein n=1 Tax=Novosphingobium sp. AP12 RepID=J2ZYJ5_9SPHN rbh
Scaffold6, whole genome shotgun sequence {ECO:0000313|EMBL:KIS32218.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4861_8
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5148..5528
DNA (381bp) protein (127aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8VK17_9SPHN
Sulfotransferase family protein {ECO:0000313|EMBL:EZP84771.1}; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium resinovorum.;"
sulfotransferase family protein
SCNpilot_expt_1000_bf_scaffold_4861_9
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5604..6008
DNA (405bp) protein (135aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8SDL4_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EJU10959.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
SCNpilot_expt_1000_bf_scaffold_4861_10
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6005..6559)
DNA (555bp) protein (185aa)
Transcriptional regulator n=1 Tax=Novosphingobium sp. AP12 RepID=J2ZZR5_9SPHN
Transcriptional regulator {ECO:0000313|EMBL:EJL24159.1}; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
GntR-family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_4861_11
unknown

Not on your lists

comp(6556..6681)
DNA (126bp) protein (42aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4861_12
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6818..8299
DNA (1482bp) protein (494aa)
aldehyde dehydrogenase (NAD+) (EC:1.2.1.3) rbh
aldehyde dehydrogenase n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00035CA6FE rbh
Aldehyde dehydrogenase {ECO:0000313|EMBL:KHK93522.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
SCNpilot_expt_1000_bf_scaffold_4861_13
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8301..9083
DNA (783bp) protein (261aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8VIG3_9SPHN rbh
Gamma-carboxymuconolactone decarboxylase {ECO:0000313|EMBL:KHK93523.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
4-carboxymuconolactone decarboxylase
SCNpilot_expt_1000_bf_scaffold_4861_14
Sphingobium sp. AP49, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9083..9838
DNA (756bp) protein (252aa)
Uncharacterized protein n=1 Tax=Sphingobium sp. AP49 RepID=J2WQQ1_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:EJK84550.1}; Flags: Precursor;; TaxID=1144307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. AP49.;"
short-chain dehydrogenase/reductase SDR
SCNpilot_expt_1000_bf_scaffold_4861_15
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9835..10650
DNA (816bp) protein (272aa)
Beta-hydroxyacid dehydrogenase, 3-hydroxyisobutyrate dehydrogenase n=1 Tax=Novosphingobium sp. AP12 RepID=J2H6U6_9SPHN rbh
6-phosphogluconate dehydrogenase {ECO:0000313|EMBL:KHK90658.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4861_16
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10720..11505
DNA (786bp) protein (262aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. AP12 RepID=J3A0W9_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:EJL24534.1}; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
short chain dehydrogenase
SCNpilot_expt_1000_bf_scaffold_4861_17
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13199..13486)
DNA (288bp) protein (96aa)
FO synthase subunit 1; K11779 FO synthase [EC:2.5.1.-]
FO synthase subunit 1 n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6EWA5_SPHCR
FO synthase subunit 1 {ECO:0000313|EMBL:AEG49799.1}; TaxID=690566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum L-1.;"
SCNpilot_expt_1000_bf_scaffold_4861_18
unknown

Not on your lists

13687..14478
DNA (792bp) protein (264aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4861_19
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14602..15456)
DNA (855bp) protein (285aa)
FO synthase subunit 1; K11779 FO synthase [EC:2.5.1.-]
FO synthase n=1 Tax=Sphingomonas sp. LH128 RepID=J8VSE9_9SPHN
FO synthase {ECO:0000313|EMBL:EZP84769.1}; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium resinovorum.;"
SCNpilot_expt_1000_bf_scaffold_4861_20
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15464..16120)
DNA (657bp) protein (219aa)
LPPG:FO 2-phospho-L-lactate transferase; K11212 LPPG:FO 2-phospho-L-lactate transferase [EC:2.7.8.28]
LPPG:FO 2-phospho-L-lactate transferase n=1 Tax=Sphingomonas sp. LH128 RepID=J8VDR7_9SPHN
2-phospho-L-lactate transferase {ECO:0000313|EMBL:KHK91348.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
SCNpilot_expt_1000_bf_scaffold_4861_21
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16069..16383)
DNA (315bp) protein (105aa)
LPPG:FO 2-phospho-L-lactate transferase n=1 Tax=Sphingomonas sp. LH128 RepID=J8VDR7_9SPHN
2-phospho-L-lactate transferase {ECO:0000313|EMBL:KHK91348.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
LPPG:FO 2-phospho-L-lactate transferase
SCNpilot_expt_1000_bf_scaffold_4861_22
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16380..17159)
DNA (780bp) protein (260aa)
hypothetical protein; K12234 coenzyme F420-0:L-glutamate ligase / coenzyme F420-1:gamma-L-glutamate ligase [EC:6.3.2.31 6.3.2.34]
Gamma-glutamyl ligase n=1 Tax=Novosphingobium sp. AP12 RepID=J2H0G6_9SPHN rbh
Gamma-glutamyl ligase {ECO:0000313|EMBL:EJL28738.1}; Flags: Precursor;; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
SCNpilot_expt_1000_bf_scaffold_4861_23
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17264..17911
DNA (648bp) protein (216aa)
reduced coenzyme F420:NADP oxidoreductase (EC:1.6.99.-); K06988
NADPH-dependent F420 reductase n=1 Tax=Sphingomonas sp. LH128 RepID=J8VK13_9SPHN rbh
Scaffold6, whole genome shotgun sequence {ECO:0000313|EMBL:KIS32088.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
SCNpilot_expt_1000_bf_scaffold_4861_24
Sphingobium sp. YBL2, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17915..18502
DNA (588bp) protein (196aa)
2-phospho-L-lactate guanylyltransferase CofC; K14941 2-phospho-L-lactate guanylyltransferase [EC:2.7.7.68]
2-phospho-L-lactate guanylyltransferase CofC n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6EWS7_SPHCR
2-phospho-L-lactate guanylyltransferase CofC {ECO:0000313|EMBL:AJR26163.1}; TaxID=484429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. YBL2.;"
SCNpilot_expt_1000_bf_scaffold_4861_25
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18708..19349
DNA (642bp) protein (214aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. AP12 RepID=J3A9V2_9SPHN rbh
Scaffold6, whole genome shotgun sequence {ECO:0000313|EMBL:KIS32089.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
short-chain dehydrogenase/reductase SDR
SCNpilot_expt_1000_bf_scaffold_4861_26
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19430..20674
DNA (1245bp) protein (415aa)
Arabinose efflux permease family protein n=1 Tax=Novosphingobium sp. AP12 RepID=J2H0H1_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:KHK91354.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
nitrate/nitrite transporter
SCNpilot_expt_1000_bf_scaffold_4861_27
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20694..21503
DNA (810bp) protein (270aa)
Sugar phosphate isomerase/epimerase n=1 Tax=Novosphingobium sp. AP12 RepID=J3ABG5_9SPHN
Sugar phosphate isomerase/epimerase {ECO:0000313|EMBL:EJL28744.1}; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
xylose isomerase domain-containing protein
SCNpilot_expt_1000_bf_scaffold_4861_28
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21520..22044
DNA (525bp) protein (175aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8VUD6_9SPHN
Aromatic-ring-hydroxylating dioxygenase {ECO:0000313|EMBL:KHK91208.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4861_29
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22041..22820)
DNA (780bp) protein (260aa)
Enoyl-CoA hydratase {ECO:0000313|EMBL:GAO54687.1}; EC=4.2.1.17 {ECO:0000313|EMBL:GAO54687.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
enoyl-CoA hydratase; K08299 carnitinyl-CoA dehydratase [EC:4.2.1.-]
Uncharacterized protein n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0HUR9_9SPHN
SCNpilot_expt_1000_bf_scaffold_4861_30
Paracoccus sp. 5503, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22817..24334)
DNA (1518bp) protein (506aa)
Uncharacterized protein n=1 Tax=uncultured Thiohalocapsa sp. PB-PSB1 RepID=V4J1R5_9GAMM
Malonyl-CoA synthase {ECO:0000313|EMBL:KGJ19608.1}; TaxID=1525717 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus sp. 5503.;"
AMP-dependent synthetase and ligase
Displaying items 1-30 of 40 in total

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