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SCNpilot_expt_1000_bf_scaffold_4884

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4884_1
unknown

Not on your lists

comp(1..84)
DNA (84bp) protein (28aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4884_2
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(81..899)
DNA (819bp) protein (273aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Sphingomonas sp. LH128 RepID=J8W4X7_9SPHN rbh
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:EJU14741.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
short-chain dehydrogenase/reductase SDR rbh
SCNpilot_expt_1000_bf_scaffold_4884_3
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1031..1789
DNA (759bp) protein (253aa)
Transcriptional regulator n=1 Tax=Sphingomonas sp. LH128 RepID=J8VPT2_9SPHN
Transcriptional regulator {ECO:0000313|EMBL:EJU14732.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_4884_4
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1786..3054)
DNA (1269bp) protein (423aa)
Nitrate/nitrite transporter n=1 Tax=Sphingomonas sp. LH128 RepID=J8W337_9SPHN rbh
Nitrate/nitrite transporter {ECO:0000313|EMBL:EJU14733.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
nitrate/nitrite transporter
SCNpilot_expt_1000_bf_scaffold_4884_5
Frankia sp. EuI1c, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3450..4832
DNA (1383bp) protein (461aa)
Uncharacterized protein n=1 Tax=Frankia sp. (strain EuI1c) RepID=E3J986_FRASU rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ADP82105.1}; TaxID=298654 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EuI1c).;"
SCNpilot_expt_1000_bf_scaffold_4884_6
unknown

Not on your lists

5165..6490
DNA (1326bp) protein (442aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4884_7
unknown

Not on your lists

6487..6858
DNA (372bp) protein (124aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4884_8
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6864..8498
DNA (1635bp) protein (545aa)
Uncharacterized protein n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0H789_9SPHN
Scaffold22, whole genome shotgun sequence {ECO:0000313|EMBL:KIS30581.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4884_9
Gammaproteobacteria bacterium BRH_c0, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8518..9864
DNA (1347bp) protein (449aa)
Uncharacterized protein n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MLP9_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KJS08788.1}; TaxID=1629722 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Gammaproteobacteria bacterium BRH_c0.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4884_10
Xanthomonas axonopodis, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10052..11905)
DNA (1854bp) protein (618aa)
TonB-dependent outer membrane receptor domain protein n=1 Tax=Xanthomonas axonopodis pv. punicae str. LMG 859 RepID=H1XH16_9XANT
TonB-dependent outer membrane receptor domain protein {ECO:0000313|EMBL:CCF68496.1}; TaxID=1085630 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas axonopodis pv. punicae str. LMG 859.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4884_11
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12081..12992
DNA (912bp) protein (304aa)
TonB-dependent receptor n=1 Tax=Sphingomonas sp. LH128 RepID=J8VMV0_9SPHN
TonB-dependent receptor {ECO:0000313|EMBL:EJU11935.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
TonB-dependent receptor; K02014 iron complex outermembrane recepter protein
SCNpilot_expt_1000_bf_scaffold_4884_12
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13070..13414
DNA (345bp) protein (115aa)
Uncharacterized protein {ECO:0000313|EMBL:AIT06220.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
SCNpilot_expt_1000_bf_scaffold_4884_13
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13463..14230
DNA (768bp) protein (256aa)
Transcriptional regulator n=1 Tax=Sphingomonas sp. LH128 RepID=J8VPT2_9SPHN
Transcriptional regulator {ECO:0000313|EMBL:EJU14732.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
GntR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_4884_14
R_Phenylobacterium_70_10, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14359..15786
DNA (1428bp) protein (476aa)
Na+/melibiose symporter-like transporter n=1 Tax=gamma proteobacterium HIMB55 RepID=H3NTN4_9GAMM
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_70_10_curated
SCNpilot_expt_1000_bf_scaffold_4884_15
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15852..17057
DNA (1206bp) protein (402aa)
monooxygenase n=1 Tax=Sphingobium sp. YL23 RepID=UPI0003A88ECA rbh
hypothetical protein rbh
Monooxygenase, FAD-binding {ECO:0000313|EMBL:ABQ66824.1}; Flags: Precursor;; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCNpilot_expt_1000_bf_scaffold_4884_16
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17707..19035
DNA (1329bp) protein (443aa)
chloride channel protein n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B6D550
Uncharacterized protein {ECO:0000313|EMBL:EQB05175.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
chloride channel voltage gated family protein
SCNpilot_expt_1000_bf_scaffold_4884_17
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19473..20027
DNA (555bp) protein (185aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B3X5_9RHIZ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGK56897.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
SCNpilot_expt_1000_bf_scaffold_4884_18
Pseudomonas sp. M1, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20331..21551
DNA (1221bp) protein (407aa)
Glutathione-regulated potassium-proton antiporter n=1 Tax=Pseudomonas sp. (strain M1) RepID=L1HMZ9_PSEUO
Potassium transporter Kef {ECO:0000313|EMBL:ETM63479.1}; TaxID=95619 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. (strain M1).;"
sodium/hydrogen exchanger rbh
SCNpilot_expt_1000_bf_scaffold_4884_19
BJP_IG2102_Syntrophobacterales_60_12, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21606..22055
DNA (450bp) protein (150aa)
Universal stress protein n=1 Tax=uncultured candidate division OP1 bacterium RepID=H5SNJ6_9BACT
universal stress protein UspA-like protein
Tax=BJP_IG2102_Syntrophobacterales_60_12
SCNpilot_expt_1000_bf_scaffold_4884_20
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22036..23193
DNA (1158bp) protein (386aa)
cyclopropane-fatty-acyl-phospholipid synthase (EC:2.1.1.79); K00574 cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79]
cyclopropane-fatty-acyl-phospholipid synthase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002F26994
Cyclopropane-fatty-acyl-phospholipid synthase {ECO:0000313|EMBL:AJP73227.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
Displaying 20 items

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