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SCNpilot_expt_1000_bf_scaffold_7078

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_7078_1
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..2101)
DNA (2100bp) protein (700aa)
aminopeptidase (EC:3.4.11.2); K01256 aminopeptidase N [EC:3.4.11.2]
Aminopeptidase N n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0IEV0_9SPHN
Aminopeptidase N {ECO:0000313|EMBL:KHK92312.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
SCNpilot_expt_1000_bf_scaffold_7078_2
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2128..2520)
DNA (393bp) protein (131aa)
aminopeptidase (EC:3.4.11.2); K01256 aminopeptidase N [EC:3.4.11.2]
Aminopeptidase N n=1 Tax=Novosphingobium sp. AP12 RepID=J2H401_9SPHN
Aminopeptidase N {ECO:0000313|EMBL:EZP78998.1}; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium resinovorum.;"
SCNpilot_expt_1000_bf_scaffold_7078_3
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2538..3350
DNA (813bp) protein (271aa)
Epimerase n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0H7V2_9SPHN rbh
Epimerase {ECO:0000313|EMBL:EQB08183.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_7078_4
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3347..3637
DNA (291bp) protein (97aa)
Putative acetyltransferase n=1 Tax=Novosphingobium sp. AP12 RepID=J3AEP7_9SPHN
Putative acetyltransferase {ECO:0000313|EMBL:EJL30074.1}; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
hypothetical protein; K06975
SCNpilot_expt_1000_bf_scaffold_7078_5
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3639..4109)
DNA (471bp) protein (157aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6E6P9_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KHK91957.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_7078_6
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4106..4918)
DNA (813bp) protein (271aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Sphingomonas sp. LH128 RepID=J8VL70_9SPHN rbh
Short-chain dehydrogenase {ECO:0000313|EMBL:KHK92510.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
short-chain dehydrogenase/reductase SDR rbh
SCNpilot_expt_1000_bf_scaffold_7078_7
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4998..5750)
DNA (753bp) protein (251aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Sphingomonas sp. LH128 RepID=J8VV99_9SPHN rbh
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:EJU11326.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
short-chain dehydrogenase/reductase SDR
SCNpilot_expt_1000_bf_scaffold_7078_8
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5881..6987)
DNA (1107bp) protein (369aa)
DNA-binding protein with HTH domain n=1 Tax=Novosphingobium sp. AP12 RepID=J2GG76_9SPHN rbh
DNA-binding protein with HTH domain protein {ECO:0000313|EMBL:EZP81535.1}; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium resinovorum.;"
regulatory protein LuxR rbh
SCNpilot_expt_1000_bf_scaffold_7078_9
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7021..8139
DNA (1119bp) protein (373aa)
Flavin-dependent oxidoreductase, methylene-tetrahydromethanopterin reductase n=1 Tax=Novosphingobium sp. AP12 RepID=J2ZRR8_9SPHN rbh
Luciferase {ECO:0000313|EMBL:KHK92508.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
luciferase family protein rbh
SCNpilot_expt_1000_bf_scaffold_7078_10
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8139..9296
DNA (1158bp) protein (386aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. AP12 RepID=J2FWC1_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:EJL21500.1}; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_7078_11
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9865..10077
DNA (213bp) protein (71aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8W4N2_9SPHN
Sugar phosphate isomerase {ECO:0000313|EMBL:KHK92506.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
xylose isomerase domain-containing protein
SCNpilot_expt_1000_bf_scaffold_7078_12
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10359..11036
DNA (678bp) protein (226aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. AP12 RepID=J2P3F1_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:KHK92505.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_7078_13
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11014..11559
DNA (546bp) protein (182aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. AP12 RepID=J2P3F1_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KHK92505.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_7078_14
Sphingobium sp. AP49, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11537..12562)
DNA (1026bp) protein (342aa)
hypothetical protein n=1 Tax=Sphingomonas echinoides RepID=UPI00026CD577
Uncharacterized protein {ECO:0000313|EMBL:EJK83159.1}; TaxID=1144307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. AP49.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_7078_15
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12687..13436)
DNA (750bp) protein (250aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. AP12 RepID=J2PAA7_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:EJL24092.1}; Flags: Precursor;; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
short-chain dehydrogenase/reductase SDR
SCNpilot_expt_1000_bf_scaffold_7078_16
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13608..14798
DNA (1191bp) protein (397aa)
Probable FAD-dependent monooxygenase n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9FJY8_SORC5 rbh
hypothetical protein rbh
Probable FAD-dependent monooxygenase {ECO:0000313|EMBL:CAN95060.1}; TaxID=448385 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain; So ce56)).;"
SCNpilot_expt_1000_bf_scaffold_7078_17
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14795..15040)
DNA (246bp) protein (82aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6E854_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EHJ62394.1}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium pentaromativorans US6-1.;"
Esterase
SCNpilot_expt_1000_bf_scaffold_7078_18
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14985..15668)
DNA (684bp) protein (228aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6E854_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EHJ62394.1}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium pentaromativorans US6-1.;"
lipase/esterase
SCNpilot_expt_1000_bf_scaffold_7078_19
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15665..15898)
DNA (234bp) protein (78aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0HIM6_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQA99214.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
luciferase family protein
SCNpilot_expt_1000_bf_scaffold_7078_20
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15915..16619)
DNA (705bp) protein (235aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0HIM6_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:EQA99214.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
luciferase-like monooxygenase
SCNpilot_expt_1000_bf_scaffold_7078_21
Mycobacterium vaccae, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16803..17612)
DNA (810bp) protein (270aa)
Uncharacterized protein n=1 Tax=Mycobacterium vaccae ATCC 25954 RepID=K0UPY0_MYCVA
Uncharacterized protein {ECO:0000313|EMBL:EJZ08876.1}; TaxID=1194972 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium vaccae ATCC 25954.;"
dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein
SCNpilot_expt_1000_bf_scaffold_7078_22
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17708..18568
DNA (861bp) protein (287aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6ECG6_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EHJ60877.1}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium pentaromativorans US6-1.;"
IclR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_7078_23
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18605..19360)
DNA (756bp) protein (252aa)
Putative TIM-barrel fold metal-dependent hydrolase n=1 Tax=Novosphingobium sp. AP12 RepID=J2ZXM9_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:KHK89485.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
amidohydrolase 2
SCNpilot_expt_1000_bf_scaffold_7078_24
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19398..19784)
DNA (387bp) protein (129aa)
Putative TIM-barrel fold metal-dependent hydrolase n=1 Tax=Novosphingobium sp. AP12 RepID=J2ZXM9_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KHK89485.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
amidohydrolase 2
SCNpilot_expt_1000_bf_scaffold_7078_25
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19820..20959)
DNA (1140bp) protein (380aa)
DNA-binding domain-containing protein, AraC-type n=1 Tax=Novosphingobium sp. AP12 RepID=J2G394_9SPHN rbh
DNA-binding domain-containing protein, AraC-type {ECO:0000313|EMBL:EJL24090.1}; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
AraC family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_7078_26
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21103..22164
DNA (1062bp) protein (354aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. AP12 RepID=J2ZZK4_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:EJL24089.1}; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_7078_27
Sphingopyxis sp. LC81, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22238..22720)
DNA (483bp) protein (161aa)
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI000379823F
AsnC family transcriptional regulator {ECO:0000313|EMBL:KGB53438.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;"
AsnC family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_7078_28
unknown

Not on your lists

22842..22952
DNA (111bp) protein (37aa)

This feature has no annotations

Displaying 28 items

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