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SCNpilot_expt_1000_bf_scaffold_6067

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_6067_1
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..1443
DNA (1443bp) protein (481aa)
signal transduction histidine kinase (EC:2.7.3.-)
histidine kinase n=1 Tax=Citromicrobium bathyomarinum RepID=UPI0001DD04FA
Uncharacterized protein {ECO:0000313|EMBL:GAO54274.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
SCNpilot_expt_1000_bf_scaffold_6067_2
unknown

Not on your lists

comp(2030..2521)
DNA (492bp) protein (164aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6067_3
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2524..3993)
DNA (1470bp) protein (490aa)
Uncharacterized protein n=1 Tax=alpha proteobacterium RS24 RepID=U2XTL2_9PROT
Uncharacterized protein {ECO:0000313|EMBL:AHE54444.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
aldehyde dehydrogenase
SCNpilot_expt_1000_bf_scaffold_6067_4
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3990..4760)
DNA (771bp) protein (257aa)
Asp/Glu racemase n=1 Tax=alpha proteobacterium BAL199 RepID=A8TSW4_9PROT
Uncharacterized protein {ECO:0000313|EMBL:AHE54445.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
Asp/Glu racemase
SCNpilot_expt_1000_bf_scaffold_6067_5
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4757..5944)
DNA (1188bp) protein (396aa)
FAD binding domain protein n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QR90_BREDI rbh
Uncharacterized protein {ECO:0000313|EMBL:AHE54446.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
monooxygenase
SCNpilot_expt_1000_bf_scaffold_6067_6
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6103..6954
DNA (852bp) protein (284aa)
Uncharacterized protein n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z902_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:AHE54447.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
type 11 methyltransferase
SCNpilot_expt_1000_bf_scaffold_6067_7
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6990..7280
DNA (291bp) protein (97aa)
Uncharacterized protein {ECO:0000313|EMBL:AHE54447.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
SCNpilot_expt_1000_bf_scaffold_6067_8
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7326..8678
DNA (1353bp) protein (451aa)
Major facilitator transporter n=1 Tax=Azospirillum amazonense Y2 RepID=G1Y308_9PROT rbh
Uncharacterized protein {ECO:0000313|EMBL:AHE54448.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
major facilitator transporter
SCNpilot_expt_1000_bf_scaffold_6067_9
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8921..10129
DNA (1209bp) protein (403aa)
FAD binding domain protein n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1Q799_BREDI rbh
Uncharacterized protein {ECO:0000313|EMBL:AHE54452.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein
SCNpilot_expt_1000_bf_scaffold_6067_10
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10126..10383
DNA (258bp) protein (86aa)
epoxide hydrolase (EC:3.3.2.-)
Putative hydrolase or acyltransferase of alpha/beta superfamily n=1 Tax=Novosphingobium sp. AP12 RepID=J2Q1F9_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AHE54453.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
SCNpilot_expt_1000_bf_scaffold_6067_11
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10488..10946
DNA (459bp) protein (153aa)
Uncharacterized protein {ECO:0000313|EMBL:AHE54453.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
SCNpilot_expt_1000_bf_scaffold_6067_12
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11058..13388
DNA (2331bp) protein (777aa)
hypothetical protein n=1 Tax=Blastomonas sp. AAP53 RepID=UPI000303E7E1 rbh
Uncharacterized protein {ECO:0000313|EMBL:AHE54455.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
TonB-dependent receptor rbh
SCNpilot_expt_1000_bf_scaffold_6067_13
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13461..13757
DNA (297bp) protein (99aa)
Uncharacterized protein n=1 Tax=Cylindrospermum stagnale PCC 7417 RepID=K9WT07_9NOST
Uncharacterized protein {ECO:0000313|EMBL:AHE54456.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6067_14
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13767..14306
DNA (540bp) protein (180aa)
Putative NADH oxidase n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KJM3_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:AHE54457.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
NemA; NADH:flavin oxidoreductases
SCNpilot_expt_1000_bf_scaffold_6067_15
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14306..15679
DNA (1374bp) protein (458aa)
stcD; FAD/FMN-binding oxidoreductase (EC:1.-.-.-); K00540 [EC:1.-.-.-] rbh
Putative NADH oxidase n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KJM3_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:AHE54457.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
SCNpilot_expt_1000_bf_scaffold_6067_16
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15691..16542
DNA (852bp) protein (284aa)
oxidoreductase n=1 Tax=Microbulbifer agarilyticus RepID=UPI000255B4D7
Uncharacterized protein {ECO:0000313|EMBL:AHE54458.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
short chain dehydrogenase/reductase family oxidoreductase
SCNpilot_expt_1000_bf_scaffold_6067_17
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16559..16954)
DNA (396bp) protein (132aa)
Uncharacterized protein {ECO:0000313|EMBL:AHE54459.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
Putative uncharacterized protein id=4319705 bin=GWA2_Methylomirabilis_73_35 species=Leptothrix cholodnii genus=Leptothrix taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6067_18
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17034..17810
DNA (777bp) protein (259aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00036CB902
Uncharacterized protein {ECO:0000313|EMBL:AHE54460.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
GntR family transcriptional regulator; K03710 GntR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_6067_19
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17897..18820
DNA (924bp) protein (308aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S043_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AHE54461.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6067_20
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18896..19828)
DNA (933bp) protein (311aa)
hypothetical protein n=1 Tax=Blastomonas sp. AAP53 RepID=UPI00030B59D2
Polysaccharide deacetylase {ECO:0000313|EMBL:EZP80576.1}; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium resinovorum.;"
polysaccharide deacetylase rbh
SCNpilot_expt_1000_bf_scaffold_6067_21
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19833..20753)
DNA (921bp) protein (307aa)
Polysaccharide deacetylase n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IKM0_9SPHN rbh
Polysaccharide deacetylase {ECO:0000313|EMBL:AHE54442.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
polysaccharide deacetylase rbh
SCNpilot_expt_1000_bf_scaffold_6067_22
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20753..21433)
DNA (681bp) protein (227aa)
Isochorismatase hydrolase n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IKL9_9SPHN rbh
isochorismatase hydrolase rbh
Isochorismatase hydrolase {ECO:0000313|EMBL:CCA91971.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
SCNpilot_expt_1000_bf_scaffold_6067_23
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21430..22386)
DNA (957bp) protein (319aa)
Hydroxymethylglutaryl-CoA lyase {ECO:0000313|EMBL:EZP80532.1}; EC=4.1.3.4 {ECO:0000313|EMBL:EZP80532.1};; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium resinovorum.;"
putative hydroxymethylglutaryl-CoA lyase; K01640 hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] rbh
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00037F67A3 rbh
SCNpilot_expt_1000_bf_scaffold_6067_24
GWF1_Sphingomonadales_63_6_curated, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22526..23614
DNA (1089bp) protein (363aa)
L-carnitine dehydratase/bile acid-inducible protein F n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IKL6_9SPHN rbh
L-carnitine dehydratase/bile acid-inducible protein F rbh
Tax=GWF1_Sphingomonadales_63_6_curated
SCNpilot_expt_1000_bf_scaffold_6067_25
Nitrospirillum amazonense, Nitrospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23611..24219
DNA (609bp) protein (203aa)
3-isopropylmalate dehydratase large subunit (EC:4.2.1.33 4.2.1.35); K01703 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
Isopropylmalate isomerase large subunit n=1 Tax=Azospirillum amazonense Y2 RepID=G1XW14_9PROT
Isopropylmalate isomerase large subunit {ECO:0000313|EMBL:EGY02541.1}; TaxID=1003237 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Nitrospirillum.;" source="Nitrospirillum amazonense Y2.;"
SCNpilot_expt_1000_bf_scaffold_6067_26
Sphingomonas sp. JE1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24696..24959
DNA (264bp) protein (88aa)
3-isopropylmalate dehydratase large subunit {ECO:0000313|EMBL:AJW29438.1}; EC=4.2.1.33 {ECO:0000313|EMBL:AJW29438.1};; TaxID=1628059 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. JE1.;"
3-isopropylmalate dehydratase large subunit (EC:4.2.1.33 4.2.1.35); K01703 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00035DBA00
SCNpilot_expt_1000_bf_scaffold_6067_27
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24956..25594
DNA (639bp) protein (213aa)
3-isopropylmalate dehydratase small subunit {ECO:0000256|HAMAP-Rule:MF_01031}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01031};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01031}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01031}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
3-isopropylmalate dehydratase small subunit n=1 Tax=Sphingomonas sp. MM-1 RepID=M4RYR3_9SPHN
3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit
SCNpilot_expt_1000_bf_scaffold_6067_28
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25722..26159)
DNA (438bp) protein (146aa)
Cytochrome c family protein n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TXG9_TISMK
cytochrome c family protein
Cytochrome c family protein {ECO:0000313|EMBL:AFK57457.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
SCNpilot_expt_1000_bf_scaffold_6067_29
unknown

Not on your lists

comp(26173..26490)
DNA (318bp) protein (106aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6067_30
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26673..28286)
DNA (1614bp) protein (538aa)
Outer membrane receptor protein n=1 Tax=Novosphingobium sp. AP12 RepID=J3AKC1_9SPHN
Outer membrane receptor protein {ECO:0000313|EMBL:EJL33126.1}; Flags: Precursor;; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
TonB-dependent receptor
Displaying 30 items

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