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SCNpilot_expt_1000_bf_scaffold_6673

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_6673_1
Streptomyces sp. JS01, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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comp(48..677)
DNA (630bp) protein (210aa)
transcriptional regulator n=1 Tax=Ponticaulis koreensis RepID=UPI0003B6A0F1
GntR family transcriptional regulator {ECO:0000313|EMBL:KFK87356.1}; TaxID=1525753 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. JS01.;"
GntR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_6673_2
unknown

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988..1242
DNA (255bp) protein (85aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6673_3
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1263..3794
DNA (2532bp) protein (844aa)
TonB-dependent receptor n=1 Tax=Sphingomonas sp. LH128 RepID=J8VMV0_9SPHN
Scaffold21, whole genome shotgun sequence {ECO:0000313|EMBL:KIS30586.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
TonB-dependent receptor
SCNpilot_expt_1000_bf_scaffold_6673_4
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4222..6432)
DNA (2211bp) protein (737aa)
Uncharacterized protein n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9CV51_SPHYA
Uncharacterized protein {ECO:0000313|EMBL:EKU74776.1}; TaxID=883163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae ATCC 51230.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6673_5
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6631..7221)
DNA (591bp) protein (197aa)
hypothetical protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00036A28B9
Putative lytic transglycosylase {ECO:0000313|EMBL:KHS45895.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
putative lytic transglycosylase
SCNpilot_expt_1000_bf_scaffold_6673_6
Variovorax sp. WDL1, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(7230..7799)
DNA (570bp) protein (190aa)
Signal peptidase S26 family protein n=1 Tax=Variovorax sp. WDL1 RepID=M1KEC9_9BURK
Signal peptidase S26 family protein {ECO:0000313|EMBL:AGF25459.1}; TaxID=207745 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. WDL1.;"
conjugal transfer protein TraF
SCNpilot_expt_1000_bf_scaffold_6673_7
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7792..8025)
DNA (234bp) protein (78aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJT3_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK67291.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_6673_8
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8205..8453
DNA (249bp) protein (83aa)
Xre family transcriptional regulator n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0J363_ACIMA
XRE family transcriptional regulator
Tax=BJP_IG2102_Gammaproteobacteria_62_140
SCNpilot_expt_1000_bf_scaffold_6673_9
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8469..9212)
DNA (744bp) protein (248aa)
Uncharacterized protein n=1 Tax=Rhodospirillum photometricum DSM 122 RepID=H6SN86_RHOPH
Uncharacterized protein {ECO:0000313|EMBL:AJA09675.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6673_10
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9232..10110)
DNA (879bp) protein (293aa)
hypothetical protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI000373F3CC rbh
Phytanoyl-CoA dioxygenase {ECO:0000313|EMBL:KHS45892.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6673_11
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10122..10736)
DNA (615bp) protein (205aa)
Acyl-homoserine-lactone synthase {ECO:0000256|RuleBase:RU361135}; EC=2.3.1.184 {ECO:0000256|RuleBase:RU361135};; Autoinducer synthesis protein {ECO:0000256|RuleBase:RU361135}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
hypothetical protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00037D651F
N-acyl-L-homoserine lactone synthase
SCNpilot_expt_1000_bf_scaffold_6673_12
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10796..11083)
DNA (288bp) protein (96aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IHW1_9SPHN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCA93992.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
SCNpilot_expt_1000_bf_scaffold_6673_13
unknown

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comp(11080..11502)
DNA (423bp) protein (141aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6673_14
unknown

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comp(11734..11940)
DNA (207bp) protein (69aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6673_15
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12209..13180
DNA (972bp) protein (324aa)
Beta-glucosidase (EC:3.2.1.21); K01188 beta-glucosidase [EC:3.2.1.21]
Beta-glucosidase-like glycosyl hydrolase n=1 Tax=Caulobacter crescentus OR37 RepID=R0E797_CAUCE
Beta-glucosidase-like glycosyl hydrolase {ECO:0000313|EMBL:ENZ81383.1}; TaxID=1292034 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus OR37.;"
Displaying 15 items

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