ggKbase home page

SCNpilot_expt_1000_bf_scaffold_10

Search features with annotation key words

Displaying items 1-30 of 606 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_10_1
unknown

Not on your lists

1..189
DNA (189bp) protein (63aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_10_2
unknown

Not on your lists

202..603
DNA (402bp) protein (134aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_10_3
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

634..1296
DNA (663bp) protein (221aa)
RHS repeat-associated core domain protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TDE8_NIAKG
RHS repeat-associated core domain-containing protein
RHS repeat-associated core domain protein {ECO:0000313|EMBL:AEV99388.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_1000_bf_scaffold_10_4
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

1742..3352
DNA (1611bp) protein (537aa)
RHS repeat-associated core domain protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TDE8_NIAKG
Uncharacterized protein {ECO:0000313|EMBL:KIC92762.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
RHS repeat-associated core domain-containing protein
SCNpilot_expt_1000_bf_scaffold_10_5
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

3355..4023
DNA (669bp) protein (223aa)
Uncharacterized protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PQM9_CHIPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU60652.1}; Flags: Precursor;; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_expt_1000_bf_scaffold_10_6
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

4186..5109
DNA (924bp) protein (308aa)
RHS repeat-associated core domain protein-containing protein n=1 Tax=Flavobacterium sp. CF136 RepID=J2J345_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:KIC93926.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_10_7
unknown

Not on your lists

5134..5526
DNA (393bp) protein (131aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_10_8
unknown

Not on your lists

5767..6009
DNA (243bp) protein (81aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_10_9
Acinetobacter baumannii, Acinetobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5960..6352
DNA (393bp) protein (131aa)
hypothetical protein n=1 Tax=Acinetobacter baumannii RepID=UPI0002B9FE86
Uncharacterized protein {ECO:0000313|EMBL:EXC08122.1}; TaxID=1310607 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii complex.;" source="Acinetobacter baumannii 625974.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_10_10
GWF2_Bacteroidetes_38_335_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

6437..8047
DNA (1611bp) protein (537aa)
Uncharacterized protein id=4524606 bin=GWF2_Bacteroidetes_38_335 species=Fulvivirga imtechensis genus=Fulvivirga taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_38_335 organism_group=Bacteroidetes organism_desc=a11 rbh
hypothetical protein rbh
Tax=GWF2_Bacteroidetes_38_335_curated
SCNpilot_expt_1000_bf_scaffold_10_11
Fulvivirga imtechensis, Fulvivirga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

8111..9067
DNA (957bp) protein (319aa)
Site-specific recombinase XerD n=1 Tax=Fulvivirga imtechensis AK7 RepID=L8JKJ9_9BACT rbh
Site-specific recombinase XerD {ECO:0000313|EMBL:ELR68039.1}; TaxID=1237149 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; Fulvivirga.;" source="Fulvivirga imtechensis AK7.;"
tyrosine recombinase XerD
SCNpilot_expt_1000_bf_scaffold_10_12
Aquimarina atlantica, Aquimarina, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

9060..9941
DNA (882bp) protein (294aa)
Tyrosine recombinase XerD n=1 Tax=Fulvivirga imtechensis AK7 RepID=L8JIF3_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EZH71286.1}; TaxID=1317122 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Aquimarina.;" source="Aquimarina atlantica.;"
integrase family protein
SCNpilot_expt_1000_bf_scaffold_10_13
Psychromonas ingrahamii, Psychromonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9948..10901
DNA (954bp) protein (318aa)
hypothetical protein n=1 Tax=Empedobacter brevis RepID=UPI00037ACCEF rbh
nucleic acid-binding protein
Putative nucleotide-binding protein containing TIR-like domain {ECO:0000313|EMBL:ABM04046.1}; TaxID=357804 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Psychromonadaceae; Psychromonas.;" source="Psychromonas ingrahamii (strain 37).;"
SCNpilot_expt_1000_bf_scaffold_10_14
unknown

Not on your lists

11652..11840
DNA (189bp) protein (63aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_10_15
unknown

Not on your lists

11998..12459
DNA (462bp) protein (154aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_10_16
unknown

Not on your lists

12472..13425
DNA (954bp) protein (318aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_10_17
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

13777..14124
DNA (348bp) protein (116aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI0003828722
hypothetical protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCNpilot_expt_1000_bf_scaffold_10_18
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

14180..15073
DNA (894bp) protein (298aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00035F26E8 rbh
hypothetical protein rbh
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCNpilot_expt_1000_bf_scaffold_10_19
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

15054..16037
DNA (984bp) protein (328aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI0003630599 rbh
hypothetical protein rbh
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCNpilot_expt_1000_bf_scaffold_10_20
unknown

Not on your lists

16089..16331
DNA (243bp) protein (81aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_10_21
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

16387..16788
DNA (402bp) protein (134aa)
Uncharacterized protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NLG4_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:AHF17345.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_10_22
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

16819..17211
DNA (393bp) protein (131aa)
hypothetical protein n=1 Tax=Nafulsella turpanensis RepID=UPI000360A9AD
Uncharacterized protein {ECO:0000313|EMBL:AHF17345.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_10_23
Bacteroides fragilis CAG:558, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

17461..18465
DNA (1005bp) protein (335aa)
Nucleoid-associated protein NdpA n=1 Tax=Bacteroides fragilis CAG:558 RepID=R5S8X4_9BACE
Nucleoid-associated protein NdpA {ECO:0000313|EMBL:CCZ41512.1}; TaxID=1263047 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides fragilis CAG:558.;"
nucleoid-associated protein NdpA
SCNpilot_expt_1000_bf_scaffold_10_24
Bacteroides fragilis CAG:558, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

18458..19627
DNA (1170bp) protein (390aa)
Uncharacterized protein n=1 Tax=Bacteroides fragilis CAG:558 RepID=R5RLQ0_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CCZ41513.1}; TaxID=1263047 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides fragilis CAG:558.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_10_25
Paenibacillus sp. MAEPY2, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

19658..20581
DNA (924bp) protein (308aa)
Uncharacterized protein n=2 Tax=Klebsiella pneumoniae RepID=U7ANQ3_KLEPN
Uncharacterized protein {ECO:0000313|EMBL:KGP80073.1}; TaxID=1395587 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. MAEPY2.;"
FRG domain-containing protein
SCNpilot_expt_1000_bf_scaffold_10_26
BJP_08E140C01_Bacteriodales_41_10, Bacteriodales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

20862..21215
DNA (354bp) protein (118aa)
Two-component system response regulator protein n=1 Tax=Arcticibacter svalbardensis MN12-7 RepID=R9GVV0_9SPHI
LytTR family two component transcriptional regulator
Tax=BJP_08E140C01_Bacteriodales_41_10
SCNpilot_expt_1000_bf_scaffold_10_27
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

21265..22248
DNA (984bp) protein (328aa)
RHS repeat-associated core domain protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TDE1_NIAKG
Uncharacterized protein {ECO:0000313|EMBL:KIC91307.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
RHS repeat-associated core domain-containing protein
SCNpilot_expt_1000_bf_scaffold_10_28
Chryseobacterium soli, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

22253..22843
DNA (591bp) protein (197aa)
Uncharacterized protein n=1 Tax=Elizabethkingia meningoseptica 502 RepID=T0NRQ9_ELIME
Uncharacterized protein {ECO:0000313|EMBL:KFF14443.1}; TaxID=445961 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium soli.;"
SCNpilot_expt_1000_bf_scaffold_10_29
Sphingobacterium sp. 21, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

23093..24643
DNA (1551bp) protein (517aa)
transposase n=1 Tax=Cytophagales str. B6 RepID=UPI0003B3D466 rbh
integrase catalytic subunit rbh
Integrase catalytic region {ECO:0000313|EMBL:ADZ81456.1}; TaxID=743722 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. (strain 21).;"
SCNpilot_expt_1000_bf_scaffold_10_30
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

24669..25415
DNA (747bp) protein (249aa)
IstB domain protein ATP-binding protein n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1YHT3_9SPHI rbh
IstB domain protein ATP-binding protein {ECO:0000313|EMBL:EHQ27483.1}; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
IstB domain-containing protein ATP-binding protein rbh
Displaying items 1-30 of 606 in total

View Taxonomy