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SCNpilot_expt_1000_bf_scaffold_47

Search features with annotation key words

Displaying items 1-30 of 320 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_47_1
Pedobacter sp. NL19, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

188..853
DNA (666bp) protein (222aa)
Transcriptional regulator, GntR family n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TPG2_NIAKG
Contig40, whole genome shotgun sequence {ECO:0000313|EMBL:KIO77279.1}; TaxID=1503925 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. NL19.;"
GntR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_47_2
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

881..2095
DNA (1215bp) protein (405aa)
Major facilitator superfamily MFS_1 n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TPG3_NIAKG rbh
major facilitator superfamily protein; K08223 MFS transporter, FSR family, fosmidomycin resistance protein rbh
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:AEV97784.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_1000_bf_scaffold_47_3
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(2092..2913)
DNA (822bp) protein (274aa)
2-dehydro-3-deoxyphosphooctonate aldolase {ECO:0000256|SAAS:SAAS00078566}; EC=2.5.1.55 {ECO:0000256|SAAS:SAAS00078538};; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
2-dehydro-3-deoxyphosphooctonate aldolase; K01627 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
2-dehydro-3-deoxyphosphooctonate aldolase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TJJ7_NIAKG
SCNpilot_expt_1000_bf_scaffold_47_4
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

3018..3965
DNA (948bp) protein (316aa)
L-threonine 3-dehydrogenase {ECO:0000313|EMBL:AEW00745.1}; EC=1.1.1.103 {ECO:0000313|EMBL:AEW00745.1};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
L-threonine 3-dehydrogenase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TJJ8_NIAKG rbh
L-threonine 3-dehydrogenase rbh
SCNpilot_expt_1000_bf_scaffold_47_5
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(3969..4241)
DNA (273bp) protein (91aa)
acylphosphatase; K01512 acylphosphatase [EC:3.6.1.7]
Acylphosphatase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TJK1_NIAKG
Acylphosphatase {ECO:0000313|EMBL:AEW00748.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_1000_bf_scaffold_47_6
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(4245..4718)
DNA (474bp) protein (158aa)
Putative GAF sensor protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TCM4_NIAKG
putative GAF sensor protein; K07170 GAF domain-containing protein
Putative GAF sensor protein {ECO:0000313|EMBL:AEW02564.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_1000_bf_scaffold_47_7
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(4745..5296)
DNA (552bp) protein (184aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TQR8_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEV96802.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_1000_bf_scaffold_47_8
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(5358..7073)
DNA (1716bp) protein (572aa)
Gamma-glutamyltranspeptidase {ECO:0000313|EMBL:AHF14585.1}; EC=2.3.2.2 {ECO:0000313|EMBL:AHF14585.1};; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
gamma-glutamyltransferase; K00681 gamma-glutamyltranspeptidase [EC:2.3.2.2]
gamma-glutamyltranspeptidase n=1 Tax=Niabella aurantiaca RepID=UPI0003657811
SCNpilot_expt_1000_bf_scaffold_47_9
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

7366..9840
DNA (2475bp) protein (825aa)
LmbE family protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TQS1_NIAKG rbh
LmbE family protein rbh
LmbE family protein {ECO:0000313|EMBL:AEV96805.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_1000_bf_scaffold_47_10
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

9852..10028
DNA (177bp) protein (59aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00036F387A
Uncharacterized protein {ECO:0000313|EMBL:AHF17226.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
SCNpilot_expt_1000_bf_scaffold_47_11
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

10154..11908
DNA (1755bp) protein (585aa)
sodium:solute symporter n=1 Tax=Niabella aurantiaca RepID=UPI00037DF0AD
Sodium:solute symporter {ECO:0000313|EMBL:AHF14587.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
Na+/solute symporter
SCNpilot_expt_1000_bf_scaffold_47_12
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(11930..12766)
DNA (837bp) protein (279aa)
Tetratricopeptide TPR_2 repeat-containing protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TQS5_NIAKG
hypothetical protein
Tetratricopeptide TPR_2 repeat-containing protein {ECO:0000313|EMBL:AEV96809.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_1000_bf_scaffold_47_13
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(12982..14340)
DNA (1359bp) protein (453aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TQS6_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEV96810.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_1000_bf_scaffold_47_14
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(14347..14940)
DNA (594bp) protein (198aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TQS7_NIAKG
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:AEV96811.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_1000_bf_scaffold_47_15
Pedobacter heparinus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

15082..17037
DNA (1956bp) protein (652aa)
von Willebrand factor type A n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6XYE6_PEDHD rbh
von Willebrand factor A; K07114 uncharacterized protein rbh
von Willebrand factor type A {ECO:0000313|EMBL:ACU02413.1}; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;"
SCNpilot_expt_1000_bf_scaffold_47_16
Prevotella buccalis, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

17160..18113
DNA (954bp) protein (318aa)
hypothetical protein n=1 Tax=Flavobacterium rivuli RepID=UPI000365EFE3
TonB-dependent receptor {ECO:0000313|EMBL:KGF35630.1}; TaxID=1401074 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella.;" source="Prevotella buccalis DNF00853.;"
TonB-linked outer membrane protein, SusC/RagA family
SCNpilot_expt_1000_bf_scaffold_47_17
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

18120..19127
DNA (1008bp) protein (336aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TQS8_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEV96812.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_1000_bf_scaffold_47_18
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(19162..20076)
DNA (915bp) protein (305aa)
Tyrosine recombinase XerC n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TQT0_NIAKG rbh
Tyrosine recombinase xerC; K04763 integrase/recombinase XerD rbh
Tyrosine recombinase XerC {ECO:0000256|HAMAP-Rule:MF_01808}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_1000_bf_scaffold_47_19
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(20100..20756)
DNA (657bp) protein (219aa)
Uncharacterized protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NN84_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:AHF17544.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
SCNpilot_expt_1000_bf_scaffold_47_20
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

21007..21516
DNA (510bp) protein (170aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TQT1_NIAKG
Uncharacterized protein {ECO:0000313|EMBL:KIC89429.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
hypothetical protein; K06940
SCNpilot_expt_1000_bf_scaffold_47_21
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(21517..21873)
DNA (357bp) protein (119aa)
UPF0102 protein NiasoDRAFT_2799 n=1 Tax=Niabella soli DSM 19437 RepID=H1NN85_9SPHI
UPF0102 protein NIASO_09615 {ECO:0000256|HAMAP-Rule:MF_00048}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein; K07460 putative endonuclease
SCNpilot_expt_1000_bf_scaffold_47_22
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

21917..23128
DNA (1212bp) protein (404aa)
mannose-6-phosphate isomerase, type 1; K01809 mannose-6-phosphate isomerase [EC:5.3.1.8]
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00037E46A8
Mannose-6-phosphate isomerase {ECO:0000313|EMBL:AHF15342.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
SCNpilot_expt_1000_bf_scaffold_47_23
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

23285..23923
DNA (639bp) protein (213aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TQT4_NIAKG
Uncharacterized protein {ECO:0000313|EMBL:KIC89426.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_47_24
Flavobacterium sp. AED, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(24003..24653)
DNA (651bp) protein (217aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI0003647370 rbh
Adenosine nucleotide hydrolase {ECO:0000313|EMBL:KIA87669.1}; TaxID=1423323 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. AED.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_47_25
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(24678..25154)
DNA (477bp) protein (159aa)
RNase HI; K03469 ribonuclease HI [EC:3.1.26.4]
Ribonuclease H {ECO:0000256|HAMAP-Rule:MF_00042, ECO:0000256|SAAS:SAAS00016437}; Short=RNase H {ECO:0000256|HAMAP-Rule:MF_00042};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00042, ECO:0000256|SAAS:SAAS00016437};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Ribonuclease H n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TQT6_NIAKG
SCNpilot_expt_1000_bf_scaffold_47_26
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(25197..26822)
DNA (1626bp) protein (542aa)
Methylcrotonoyl-CoA carboxylase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TQT7_NIAKG
Methylcrotonoyl-CoA carboxylase {ECO:0000313|EMBL:KIC89421.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
methylcrotonoyl-CoA carboxylase
SCNpilot_expt_1000_bf_scaffold_47_27
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(26950..30246)
DNA (3297bp) protein (1099aa)
Outer membrane receptor for ferrienterochelin and colicins n=1 Tax=Flexibacter litoralis (strain ATCC 23117 / DSM 6794 / NBRC 15988 / NCIMB 1366 / Sio-4) RepID=I4AKA3_FLELS rbh
Uncharacterized protein {ECO:0000313|EMBL:KIC91423.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
outer membrane receptor for ferrienterochelin and colicins rbh
SCNpilot_expt_1000_bf_scaffold_47_28
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

30471..31676
DNA (1206bp) protein (402aa)
GTP cyclohydrolase-2; K14652 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]
3,4-dihydroxy-2-butanone 4-phosphate synthase n=1 Tax=Niabella aurantiaca RepID=UPI0003803239 rbh
Riboflavin biosynthesis protein RibBA {ECO:0000256|HAMAP-Rule:MF_01283, ECO:0000256|SAAS:SAAS00280052}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
SCNpilot_expt_1000_bf_scaffold_47_29
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(31743..36422)
DNA (4680bp) protein (1560aa)
Uncharacterized protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NN58_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:AHF17555.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_47_30
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

36775..37800
DNA (1026bp) protein (342aa)
Asparaginase n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KWT8_SOLCM rbh
Isoaspartyl peptidase {ECO:0000313|EMBL:KIC94170.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
asparaginase rbh
Displaying items 1-30 of 320 in total

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