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SCNpilot_expt_1000_bf_scaffold_271

Search features with annotation key words

Displaying items 1-30 of 83 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_271_1
unknown

Not on your lists

3..335
DNA (333bp) protein (111aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_271_2
unknown

Not on your lists

384..581
DNA (198bp) protein (66aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_271_3
Flavobacterium sp. EM1308, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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710..2860
DNA (2151bp) protein (717aa)
Histidine kinase {ECO:0000313|EMBL:KFC61205.1}; EC=2.7.13.3 {ECO:0000313|EMBL:KFC61205.1};; TaxID=1492737 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1308.;"
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI0003667431 rbh
multi-sensor hybrid histidine kinase
SCNpilot_expt_1000_bf_scaffold_271_4
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(2924..3667)
DNA (744bp) protein (248aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00036B4FA1
hypothetical protein; K02066 putative ABC transport system permease protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCNpilot_expt_1000_bf_scaffold_271_5
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(3748..6864)
DNA (3117bp) protein (1039aa)
Protein-export membrane protein SecD n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PI98_CHIPD rbh
bifunctional preprotein translocase subunit SecD/SecF; K12257 SecD/SecF fusion protein rbh
Protein-export membrane protein SecD {ECO:0000313|EMBL:ACU63660.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_expt_1000_bf_scaffold_271_6
GWF2_Bacteroidetes_43_63_curated, Bacteroidetes, Bacteria

Not on your lists

7090..10572
DNA (3483bp) protein (1161aa)
CHU large protein; uncharacterized id=4380903 bin=GWF2_Bacteroidetes_43_63 species=Cytophaga hutchinsonii genus=Cytophaga taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_43_63 organism_group=Bacteroidetes organism_desc=a77
PDK repeat-containing protein
Tax=GWF2_Bacteroidetes_43_63_curated
SCNpilot_expt_1000_bf_scaffold_271_7
Epilithonimonas sp. FH1, Epilithonimonas, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

10717..12771
DNA (2055bp) protein (685aa)
phenylacetic acid degradation protein paaN; K02618 oxepin-CoA hydrolase / 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase [EC:3.7.1.16 1.17.1.7]
hypothetical protein n=1 Tax=Empedobacter brevis RepID=UPI00036442D0 rbh
Enoyl-CoA hydratase {ECO:0000313|EMBL:KFC24527.1}; TaxID=1233951 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Epilithonimonas.;" source="Epilithonimonas sp. FH1.;"
SCNpilot_expt_1000_bf_scaffold_271_8
Flavobacteriales bacterium BRH_c54, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

12854..13627
DNA (774bp) protein (258aa)
Enoyl-CoA hydratase/isomerase; K13766 methylglutaconyl-CoA hydratase [EC:4.2.1.18]
Enoyl-CoA hydratase/isomerase n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2ID57_FLUTR
Enoyl-CoA hydratase {ECO:0000313|EMBL:KJS04426.1}; TaxID=1629721 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales.;" source="Flavobacteriales bacterium BRH_c54.;"
SCNpilot_expt_1000_bf_scaffold_271_9
Sphingobacterium sp. 21, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(13628..14731)
DNA (1104bp) protein (368aa)
Uncharacterized protein n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4C896_SPHS2 rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ADZ78368.1}; TaxID=743722 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. (strain 21).;"
SCNpilot_expt_1000_bf_scaffold_271_10
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(14750..15835)
DNA (1086bp) protein (362aa)
Glycosyl transferase group 1 n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TII7_NIAKG rbh
group 1 glycosyl transferase rbh
Glycosyl transferase group 1 {ECO:0000313|EMBL:AEW01803.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_1000_bf_scaffold_271_11
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(15839..16765)
DNA (927bp) protein (309aa)
Glycosyl transferase family 2 n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1YG98_9SPHI
Glycosyl transferase family 2 {ECO:0000313|EMBL:EHQ27362.1}; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
yibD; glycosyltransferase
SCNpilot_expt_1000_bf_scaffold_271_12
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(16785..18395)
DNA (1611bp) protein (537aa)
Putative uncharacterized protein n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1YG97_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:KIC93767.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
SCNpilot_expt_1000_bf_scaffold_271_13
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(18397..19818)
DNA (1422bp) protein (474aa)
Polysaccharide biosynthesis protein n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1YG96_9SPHI
Polysaccharide biosynthesis protein {ECO:0000313|EMBL:EHQ27360.1}; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
lipopolysaccharide O-side chain biosynthesis protein
SCNpilot_expt_1000_bf_scaffold_271_14
Microscilla marina, Microscilla, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

19883..21226
DNA (1344bp) protein (448aa)
O-Antigen Polymerase family n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZI84_9BACT
O-Antigen Polymerase family {ECO:0000313|EMBL:EAY29752.1}; TaxID=313606 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Microscilla.;" source="Microscilla marina ATCC 23134.;"
SCNpilot_expt_1000_bf_scaffold_271_15
Nonlabens sediminis, Nonlabens, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

21307..22047
DNA (741bp) protein (247aa)
Undecaprenyl-phosphate glucose phosphotransferase n=1 Tax=Bizionia argentinensis JUB59 RepID=G2EET1_9FLAO
Glycosyltransferase {ECO:0000313|EMBL:GAK95764.1}; TaxID=319236 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Nonlabens.;" source="Nonlabens sediminis.;"
UDP-phosphate glucose phosphotransferase; K03606 putative colanic acid biosysnthesis UDP-glucose lipid carrier transferase
SCNpilot_expt_1000_bf_scaffold_271_16
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

22135..22956
DNA (822bp) protein (274aa)
UspA domain-containing protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TF23_NIAKG
UspA domain-containing protein
UspA domain-containing protein {ECO:0000313|EMBL:AEW02643.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_1000_bf_scaffold_271_17
unknown

Not on your lists

comp(22958..23344)
DNA (387bp) protein (129aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_271_18
Sanguibacteroides justesenii, Sanguibacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(23370..23732)
DNA (363bp) protein (121aa)
Uncharacterized protein n=2 Tax=Odoribacter RepID=R5UP26_9PORP
Uncharacterized protein {ECO:0000313|EMBL:KIO45748.1}; TaxID=1547597 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Sanguibacteroides.;" source="Sanguibacteroides justesenii.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_271_19
unknown

Not on your lists

comp(23742..23936)
DNA (195bp) protein (65aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_271_20
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

24067..25074
DNA (1008bp) protein (336aa)
Uncharacterized protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NR22_9SPHI
Membrane protein {ECO:0000313|EMBL:AHF16511.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_271_21
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(25078..25647)
DNA (570bp) protein (190aa)
nicotinate (nicotinamide) nucleotide adenylyltransferase; K00969 nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18]
Probable nicotinate-nucleotide adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00244}; EC=2.7.7.18 {ECO:0000256|HAMAP-Rule:MF_00244};; Deamido-NAD(+) diphosphorylase {ECO:0000256|HAMAP-Rule:MF_00244}; Deamido-NAD(+) pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00244}; Nicotinate mononucleotide adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00244}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 4
Probable nicotinate-nucleotide adenylyltransferase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PJU8_CHIPD
SCNpilot_expt_1000_bf_scaffold_271_22
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(25711..25968)
DNA (258bp) protein (86aa)
FeoA family protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PIQ4_CHIPD
FeoA family protein; K04758 ferrous iron transport protein A
FeoA family protein {ECO:0000313|EMBL:ACU58243.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_expt_1000_bf_scaffold_271_23
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

26036..26467
DNA (432bp) protein (144aa)
Endoribonuclease YbeY {ECO:0000256|HAMAP-Rule:MF_00009}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00009};; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
Endoribonuclease YbeY n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PIQ5_CHIPD
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_271_24
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

26469..27188
DNA (720bp) protein (240aa)
pseudouridine synthase; K06180 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00035C1355
Pseudouridine synthase {ECO:0000313|EMBL:ACU58700.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_expt_1000_bf_scaffold_271_25
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

27290..27637
DNA (348bp) protein (116aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00036B4C7D
Gliding motility protein GldC {ECO:0000313|EMBL:KIC92132.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_271_26
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

27671..28123
DNA (453bp) protein (151aa)
aspartyl-tRNA amidotransferase subunit B n=1 Tax=Segetibacter koreensis RepID=UPI0003707846
hypothetical protein; K09117 hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW02810.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_1000_bf_scaffold_271_27
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

28128..28673
DNA (546bp) protein (182aa)
Colicin V production protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8THG5_NIAKG
colicin V production protein; K03558 membrane protein required for colicin V production
Colicin V production protein {ECO:0000313|EMBL:AEW02811.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_1000_bf_scaffold_271_28
Bacillus ginsengihumi, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

28654..29220
DNA (567bp) protein (189aa)
Para-aminobenzoate/anthranilate synthase glutamine amidotransferasecomponent II (EC:4.1.3.27); K01658 anthranilate synthase component II [EC:4.1.3.27] id=5097172 bin=PER_GWF2_39_17 species=PER_GWF2_39_17 genus=PER_GWF2_39_17 taxon_order=PER_GWF2_39_17 taxon_class=PER_GWF2_39_17 phylum=PER tax=PER_GWF2_39_17 organism_group=PER (Peregrinibacteria)
Anthranilate synthase subunit II {ECO:0000313|EMBL:KHD84389.1}; TaxID=363870 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus ginsengihumi.;"
glutamine amidotransferase of anthranilate synthase
SCNpilot_expt_1000_bf_scaffold_271_29
Arcticibacter svalbardensis, Arcticibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(29191..29904)
DNA (714bp) protein (238aa)
Uncharacterized protein n=1 Tax=Arcticibacter svalbardensis MN12-7 RepID=R9H086_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:EOR94629.1}; TaxID=1150600 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Arcticibacter.;" source="Arcticibacter svalbardensis MN12-7.;"
lycopene cyclase domain-containing protein
SCNpilot_expt_1000_bf_scaffold_271_30
Polaribacter sp. MED152, Polaribacter, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(29901..30395)
DNA (495bp) protein (165aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI0003708C9F
crtZ1; beta-carotene hydroxylase
Beta-carotene hydroxylase {ECO:0000313|EMBL:EAQ41561.2}; TaxID=313598 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Polaribacter.;" source="Polaribacter sp. MED152.;"
Displaying items 1-30 of 83 in total

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