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SCNpilot_expt_1000_bf_scaffold_2625

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2625_1
Acinetobacter baumannii, Acinetobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(145..1026)
DNA (882bp) protein (294aa)
Uncharacterized protein n=1 Tax=Acinetobacter calcoaceticus NIPH 13 RepID=N8PJH2_ACICA
Uncharacterized protein {ECO:0000313|EMBL:ENW74563.1}; TaxID=1217629 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii complex.;" source="Acinetobacter baumannii NIPH 80.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2625_2
RIFCSPLOWO2_12_FULL_Bacteroidetes_31_6_curated, Bacteroidetes, Bacteria

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comp(1362..2318)
DNA (957bp) protein (319aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00035C09FE
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_31_6_curated
SCNpilot_expt_1000_bf_scaffold_2625_3
unknown

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2446..2976
DNA (531bp) protein (177aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2625_4
Flavobacterium saliperosum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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3087..4667
DNA (1581bp) protein (527aa)
Uncharacterized protein n=1 Tax=Flavobacterium saliperosum S13 RepID=V6SA22_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:ESU23528.1}; TaxID=1341155 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium saliperosum S13.;"
Tfp pilus assembly protein PilF
SCNpilot_expt_1000_bf_scaffold_2625_5
GWA2_Bacteroidetes_31_9_curated, Bacteroidia, Bacteroidetes, Bacteria

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comp(4901..7819)
DNA (2919bp) protein (973aa)
Diguanylate cyclase/phosphodiesterase id=2533312 bin=GWF1_Flavobacteria_32_7 species=Pedobacter sp. BAL39 genus=Pedobacter taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWF1_Flavobacteria_32_7 organism_group=Bacteroidetes
signal transduction histidine kinase LytS
Tax=GWA2_Bacteroidetes_31_9_curated
SCNpilot_expt_1000_bf_scaffold_2625_6
Arcticibacter svalbardensis, Arcticibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(7942..10683)
DNA (2742bp) protein (914aa)
Two-component system sensor histidine kinase (EC:2.7.13.3)
Sensor histidine kinase n=1 Tax=Arcticibacter svalbardensis MN12-7 RepID=R9GPY9_9SPHI
Sensor histidine kinase {ECO:0000313|EMBL:EOR93907.1}; TaxID=1150600 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Arcticibacter.;" source="Arcticibacter svalbardensis MN12-7.;"
SCNpilot_expt_1000_bf_scaffold_2625_7
Cellulophaga lytica, Cellulophaga, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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comp(10693..11424)
DNA (732bp) protein (244aa)
Two component transcriptional regulator, LytTR family n=1 Tax=Cellulophaga lytica (strain ATCC 23178 / DSM 7489 / JCM 8516 / NBRC 14961 / NCIMB 1423 / VKM B-1433 / Cy l20) RepID=F0RFG6_CELLC
LytTR family two component transcriptional regulator; K02477 two-component system, LytT family, response regulator
Two component transcriptional regulator, LytTR family {ECO:0000313|EMBL:ADY27908.1}; TaxID=867900 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Cellulophaga.;" source="Cellulophaga lytica (strain ATCC 23178 / DSM 7489 / JCM 8516 / NBRC; 14961 / NCIMB 1423 / VKM B-1433 / Cy l20).;"
SCNpilot_expt_1000_bf_scaffold_2625_8
Pedobacter sp. NL19, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(11548..11835)
DNA (288bp) protein (96aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000376E853
Contig37, whole genome shotgun sequence {ECO:0000313|EMBL:KIO77361.1}; TaxID=1503925 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. NL19.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2625_9
Chryseobacterium taiwanense, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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11955..12746
DNA (792bp) protein (264aa)
Uncharacterized protein n=1 Tax=Owenweeksia hongkongensis (strain DSM 17368 / JCM 12287 / NRRL B-23963) RepID=G8R4K5_OWEHD
Uncharacterized protein {ECO:0000313|EMBL:KIC61932.1}; TaxID=363331 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium taiwanense.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2625_10
Flavobacterium beibuense, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

13001..13888
DNA (888bp) protein (296aa)
Transcriptional regulator, LysR family n=1 Tax=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) RepID=B3QTU7_CHLT3
Transcriptional regulator {ECO:0000313|EMBL:KGO78872.1}; TaxID=1406840 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium beibuense F44-8.;"
LysR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_2625_11
Pedobacter sp. BAL39, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

13967..14941
DNA (975bp) protein (325aa)
TPR repeat n=1 Tax=Pedobacter sp. BAL39 RepID=A6EJ17_9SPHI rbh
TPR repeat {ECO:0000313|EMBL:EDM34531.1}; TaxID=391596 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. BAL39.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2625_12
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

15228..16046
DNA (819bp) protein (273aa)
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; K00674 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase [EC:2.3.1.117]
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TEC8_NIAKG
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase {ECO:0000313|EMBL:GAO43320.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
SCNpilot_expt_1000_bf_scaffold_2625_13
Pedobacter heparinus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

16074..17237
DNA (1164bp) protein (388aa)
MscS Mechanosensitive ion channel n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6XXL4_PEDHD
mechanosensitive ion channel MscS; K16052 MscS family membrane protein YnaI
MscS Mechanosensitive ion channel {ECO:0000313|EMBL:ACU02268.1}; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;"
SCNpilot_expt_1000_bf_scaffold_2625_14
unknown

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17436..17594
DNA (159bp) protein (53aa)

This feature has no annotations

Displaying 14 items

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