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SCNpilot_expt_1000_bf_scaffold_28

Search features with annotation key words

Displaying items 1-30 of 1018 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_28_1
Devosia insulae, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

513..956
DNA (444bp) protein (148aa)
Pseudoazurin n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CRZ5_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KKB77696.1}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae DS-56.;"
pseudoazurin precursor
SCNpilot_expt_1000_bf_scaffold_28_2
Devosia epidermidihirudinis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1188..2465
DNA (1278bp) protein (426aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGP2_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKC35917.1}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudinis.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_28_3
Devosia epidermidihirudinis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2466..6716
DNA (4251bp) protein (1417aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGP3_PELHB rbh
Uncharacterized protein {ECO:0000313|EMBL:KKC35916.1}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudinis.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_28_4
Devosia epidermidihirudinis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6709..7749
DNA (1041bp) protein (347aa)
methanol dehydrogenase regulatory protein (EC:3.6.3.-); K03924 MoxR-like ATPase [EC:3.6.3.-] rbh
ATPase associated with various cellular activities AAA_3 n=2 Tax=Ketogulonicigenium vulgare RepID=E3EZH8_KETVY rbh
ATPase AAA {ECO:0000313|EMBL:KKC35915.1}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudinis.;"
SCNpilot_expt_1000_bf_scaffold_28_5
Devosia epidermidihirudinis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7746..8621
DNA (876bp) protein (292aa)
Uncharacterized protein n=2 Tax=Ketogulonicigenium vulgare RepID=F9Y5R2_KETVW
Uncharacterized protein {ECO:0000313|EMBL:KKC35914.1}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudinis.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_28_6
Devosia epidermidihirudinis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8618..9592
DNA (975bp) protein (325aa)
ABC transporter, ATP-binding protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGP6_PELHB rbh
Multidrug ABC transporter ATPase {ECO:0000313|EMBL:KKC35913.1}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudinis.;"
ABC transporter ATP-binding protein; K09687 antibiotic transport system ATP-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_28_7
Devosia epidermidihirudinis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9589..10341
DNA (753bp) protein (251aa)
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGP7_PELHB rbh
ABC transporter permease {ECO:0000313|EMBL:KKC35912.1}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudinis.;"
nitrate/sulfonate/bicarbonate ABC transporter permease; K02050 NitT/TauT family transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_28_8
Devosia epidermidihirudinis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10364..11377
DNA (1014bp) protein (338aa)
ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGP8_PELHB rbh
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KKC35911.1}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudinis.;"
nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein; K02051 NitT/TauT family transport system substrate-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_28_9
Devosia epidermidihirudinis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11374..12246
DNA (873bp) protein (291aa)
ABC transporter related protein n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11GK2_MESSB rbh
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KKC35969.1}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudinis.;"
ABC transporter; K02049 NitT/TauT family transport system ATP-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_28_10
Devosia epidermidihirudinis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12267..13067
DNA (801bp) protein (267aa)
ABC-2 type transporter n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGQ0_PELHB rbh
Transport permease protein {ECO:0000256|RuleBase:RU361157}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudinis.;"
ABC-2 type transporter; K09686 antibiotic transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_28_11
Devosia epidermidihirudinis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13071..13928
DNA (858bp) protein (286aa)
Extracellular solute-binding protein, family 3 n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGQ1_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKC35909.1}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudinis.;"
ABC transporter substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_28_12
Devosia insulae, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13934..14542)
DNA (609bp) protein (203aa)
Peptidase M50 n=2 Tax=Ketogulonicigenium vulgare RepID=E3EZH4_KETVY
Uncharacterized protein {ECO:0000313|EMBL:KKB77564.1}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae DS-56.;"
Peptidase M50
SCNpilot_expt_1000_bf_scaffold_28_13
Devosia epidermidihirudinis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14539..15384)
DNA (846bp) protein (282aa)
Extracellular solute-binding protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGP0_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKC35907.1}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudinis.;"
ABC transporter substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_28_14
Devosia insulae, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15470..17233)
DNA (1764bp) protein (588aa)
Quino(Hemo)protein alcohol dehydrogenase, PQQ-dependent n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGN9_PELHB rbh
ATP-binding protein {ECO:0000313|EMBL:KKB77566.1}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae DS-56.;"
quino(hemo)protein alcohol dehydrogenase, PQQ-dependent rbh
SCNpilot_expt_1000_bf_scaffold_28_15
Ketogulonicigenium vulgare, Ketogulonicigenium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17303..17878)
DNA (576bp) protein (192aa)
Cytochrome c551 n=1 Tax=Ketogulonicigenium vulgare RepID=Q76KD4_9RHOB
Cytochrome c551 {ECO:0000313|EMBL:BAC98338.1}; TaxID=92945 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ketogulonicigenium.;" source="Ketogulonicigenium vulgare.;"
cytochrome c551
SCNpilot_expt_1000_bf_scaffold_28_16
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18103..19395)
DNA (1293bp) protein (431aa)
Diaminopimelate decarboxylase {ECO:0000313|EMBL:AHK01527.1}; EC=4.1.1.20 {ECO:0000313|EMBL:AHK01527.1};; TaxID=1435057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens LBA4213 (Ach5).;"
lysA; diaminopimelate decarboxylase (EC:4.1.1.20); K01586 diaminopimelate decarboxylase [EC:4.1.1.20] rbh
Diaminopimelate decarboxylase n=1 Tax=Agrobacterium tumefaciens 5A RepID=H0HAU5_RHIRD rbh
SCNpilot_expt_1000_bf_scaffold_28_17
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19382..20914)
DNA (1533bp) protein (511aa)
Long-chain-fatty-acid--CoA ligase LcfB {ECO:0000313|EMBL:EYR77442.1}; EC=6.2.1.3 {ECO:0000313|EMBL:EYR77442.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Long-chain-fatty-acid--CoA ligase LcfB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D406_9RHIZ rbh
Long-chain fatty acid-CoA ligase rbh
SCNpilot_expt_1000_bf_scaffold_28_18
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20911..21177)
DNA (267bp) protein (89aa)
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7U9E8_RHIRD
Acyl carrier protein {ECO:0000313|EMBL:CDN93810.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
Acyl carrier protein
SCNpilot_expt_1000_bf_scaffold_28_19
Rhizobium lupini, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21205..22050)
DNA (846bp) protein (282aa)
Uncharacterized protein n=1 Tax=Rhizobium lupini HPC(L) RepID=K5D1G4_RHILU
Uncharacterized protein {ECO:0000313|EMBL:EKJ95450.1}; TaxID=1229491 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium lupini HPC(L).;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_28_20
bacterium YEK0313, Bacteria

Not on your lists

22360..23742
DNA (1383bp) protein (461aa)
Putative glycosyl transferase n=1 Tax=Methylobacterium extorquens (strain DSM 5838 / DM4) RepID=C7CGM1_METED
UDP-glucose:undecaprenyl-phosphate glucose-1-phosphate transferase {ECO:0000313|EMBL:CEJ14421.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
glycosyl transferase
SCNpilot_expt_1000_bf_scaffold_28_21
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23746..24507)
DNA (762bp) protein (254aa)
Polysaccharide deacetylase n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11EC3_MESSB
polysaccharide deacetylase
Polysaccharide deacetylase {ECO:0000313|EMBL:ABG64252.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
SCNpilot_expt_1000_bf_scaffold_28_22
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24522..25778)
DNA (1257bp) protein (419aa)
Exopolysaccharide production protein n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7U4N4_RHIRD rbh
Exopolysaccharide production protein {ECO:0000313|EMBL:EGP58795.1}; TaxID=1050720 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens F2.;"
Lipid A core-O-antigen ligase-like enyme rbh
SCNpilot_expt_1000_bf_scaffold_28_23
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25799..27208)
DNA (1410bp) protein (470aa)
Lipopolysaccharide biosynthesis protein n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FLD7_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KKB78411.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
lipopolysaccharide biosynthesis protein
SCNpilot_expt_1000_bf_scaffold_28_24
Rhizobium sp. UR51a, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27631..28983
DNA (1353bp) protein (451aa)
Polysaccharide biosynthesis protein n=1 Tax=Rhizobium lupini HPC(L) RepID=K5D0U8_RHILU rbh
Uncharacterized protein {ECO:0000313|EMBL:KIV62255.1}; TaxID=1604021 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. UR51a.;"
Membrane protein involved in the export of O-antigen and teichoic acid rbh
SCNpilot_expt_1000_bf_scaffold_28_25
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29025..30464
DNA (1440bp) protein (480aa)
Sugar transferase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QIY9_NITHX
sugar transferase
Sugar transferase {ECO:0000313|EMBL:ABE63808.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_expt_1000_bf_scaffold_28_26
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30458..31531)
DNA (1074bp) protein (358aa)
hypothetical protein n=1 Tax=Agrobacterium sp. 224MFTsu3.1 RepID=UPI000364E4B4 rbh
Uncharacterized protein {ECO:0000313|EMBL:EHH03044.1}; TaxID=1082932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens CCNWGS0286.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_28_27
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31531..32595)
DNA (1065bp) protein (355aa)
Beta-xylanase {ECO:0000256|RuleBase:RU361174}; EC=3.2.1.8 {ECO:0000256|RuleBase:RU361174};; TaxID=1336745 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter DSM 30147.;"
xynA; endo-1,4-beta-xylanase; K01181 endo-1,4-beta-xylanase [EC:3.2.1.8] rbh
endo-1,4-beta-xylanase n=1 Tax=Agrobacterium sp. 224MFTsu3.1 RepID=UPI0003718631 rbh
SCNpilot_expt_1000_bf_scaffold_28_28
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32771..33679
DNA (909bp) protein (303aa)
Polypeptide N-acetylgalactosaminyltransferase 1 {ECO:0000313|EMBL:KJX87703.1}; EC=2.4.1.41 {ECO:0000313|EMBL:KJX87703.1};; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
UDP-hexose transferase n=2 Tax=Agrobacterium RepID=A9CHX6_AGRT5 rbh
exoU; UDP-hexose transferase rbh
SCNpilot_expt_1000_bf_scaffold_28_29
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33731..34699
DNA (969bp) protein (323aa)
UDP-hexose transferase n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7U5F3_RHIRD rbh
UDP-hexose transferase {ECO:0000313|EMBL:EGP57754.1}; TaxID=1050720 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens F2.;"
putative glycosyltransferase rbh
SCNpilot_expt_1000_bf_scaffold_28_30
Sinorhizobium americanum, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34756..35877
DNA (1122bp) protein (374aa)
hypothetical protein n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI000380A138
Uncharacterized protein {ECO:0000313|EMBL:KEC80848.1}; TaxID=1408224 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium americanum CCGM7.;"
hypothetical protein
Displaying items 1-30 of 1018 in total

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