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SCNpilot_expt_1000_bf_scaffold_216

Search features with annotation key words

Displaying items 1-30 of 154 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_216_1
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(363..2873)
DNA (2511bp) protein (837aa)
Citronellyl-CoA dehydrogenase n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HB67_9BRAD rbh
Citronellyl-CoA dehydrogenase {ECO:0000313|EMBL:ERF81701.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_216_2
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3095..3475
DNA (381bp) protein (127aa)
carboxymuconolactone decarboxylase; K01607 4-carboxymuconolactone decarboxylase [EC:4.1.1.44]
4-carboxymuconolactone decarboxylase {ECO:0000313|EMBL:ABE38177.1}; EC=4.1.1.44 {ECO:0000313|EMBL:ABE38177.1};; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
4-carboxymuconolactone decarboxylase n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q13CL2_RHOPS
SCNpilot_expt_1000_bf_scaffold_216_3
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3498..4394
DNA (897bp) protein (299aa)
oxidoreductase; K00100 [EC:1.1.1.-] rbh
Bll1384 protein n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89UN2_BRADU rbh
Oxidoreductase {ECO:0000313|EMBL:KGT77012.1}; TaxID=375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum.;"
SCNpilot_expt_1000_bf_scaffold_216_4
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4580..5845)
DNA (1266bp) protein (422aa)
Diaminopimelate decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738}; Short=DAP decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120};; Short=DAPDC {ECO:0000256|HAMAP-Rule:MF_02120};; EC=4.1.1.20 {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738};; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
diaminopimelate decarboxylase; K01586 diaminopimelate decarboxylase [EC:4.1.1.20] rbh
Diaminopimelate decarboxylase n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8NZ71_9BRAD rbh
SCNpilot_expt_1000_bf_scaffold_216_5
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5853..6143)
DNA (291bp) protein (97aa)
Putative uncharacterized protein n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SUR1_NITWN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABA03980.1}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
SCNpilot_expt_1000_bf_scaffold_216_6
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6206..7591)
DNA (1386bp) protein (462aa)
Argininosuccinate lyase {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:SAAS00211019}; Short=ASAL {ECO:0000256|HAMAP-Rule:MF_00006};; EC=4.3.2.1 {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:SAAS00211017};; Arginosuccinase {ECO:0000256|HAMAP-Rule:MF_00006}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
argininosuccinate lyase (EC:4.3.2.1); K01755 argininosuccinate lyase [EC:4.3.2.1] rbh
argininosuccinate lyase n=1 Tax=Bradyrhizobium elkanii RepID=UPI0003179D6E rbh
SCNpilot_expt_1000_bf_scaffold_216_7
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7690..8364
DNA (675bp) protein (225aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI0002E35D35 rbh
Bradyrhizobium elkanii strain UASWS1015 Contig167, whole genome shotgun sequence {ECO:0000313|EMBL:KIU51085.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
thioredoxin-like protein
SCNpilot_expt_1000_bf_scaffold_216_8
Burkholderia fungorum, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8611..8856)
DNA (246bp) protein (82aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI00035FEAF1
Uncharacterized protein {ECO:0000313|EMBL:AJZ60138.1}; TaxID=134537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia fungorum.;"
SCNpilot_expt_1000_bf_scaffold_216_9
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8932..9366
DNA (435bp) protein (145aa)
Uncharacterized protein n=2 Tax=Afipia RepID=K8PED1_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS41012.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
activator of hsp90 ATPase 1 family protein
SCNpilot_expt_1000_bf_scaffold_216_10
Burkholderia phytofirmans, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9390..10016
DNA (627bp) protein (209aa)
glutathione S-transferase domain; K00799 glutathione S-transferase [EC:2.5.1.18]
Glutathione S-transferase domain n=1 Tax=Burkholderia phytofirmans (strain DSM 17436 / PsJN) RepID=B2TBN9_BURPP
Glutathione S-transferase domain {ECO:0000313|EMBL:ACD19691.1}; TaxID=398527 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia phytofirmans (strain DSM 17436 / PsJN).;"
SCNpilot_expt_1000_bf_scaffold_216_11
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10058..10798
DNA (741bp) protein (247aa)
hypothetical protein n=1 Tax=Halomonas sp. KM-1 RepID=UPI000288F74D rbh
PF05988 family protein {ECO:0000313|EMBL:KDD59998.1}; TaxID=1331242 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica OSU553.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_216_12
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10820..11179
DNA (360bp) protein (120aa)
RNA signal recognition particle 4.5S RNA n=2 Tax=Oligotropha carboxidovorans RepID=B6JDI6_OLICO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI07872.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_expt_1000_bf_scaffold_216_13
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11197..11595
DNA (399bp) protein (133aa)
Uncharacterized protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WUV4_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EAQ36259.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
glyoxalase/bleomycin resistance protein/dioxygenase; K06996
SCNpilot_expt_1000_bf_scaffold_216_14
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11592..11783)
DNA (192bp) protein (64aa)
Uncharacterized protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WUW3_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EAQ36258.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_216_15
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11992..12873)
DNA (882bp) protein (294aa)
3-hydroxybutyryl-CoA dehydrogenase; K00074 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
3-hydroxyacyl-CoA dehydrogenase {ECO:0000313|EMBL:ABD90400.1}; EC=1.1.1.35 {ECO:0000313|EMBL:ABD90400.1};; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
3-hydroxyacyl-CoA dehydrogenase n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q20WT6_RHOPB
SCNpilot_expt_1000_bf_scaffold_216_16
Bradyrhizobium sp. WSM1253, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13052..13996)
DNA (945bp) protein (315aa)
electron transfer flavoprotein subunit beta n=1 Tax=Mesorhizobium sp. WSM4349 RepID=UPI000360C219 rbh
Electron transfer flavoprotein, alpha subunit {ECO:0000313|EMBL:EIG59499.1}; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
etfL; electron transfer flavoprotein large subunit; K03522 electron transfer flavoprotein alpha subunit rbh
SCNpilot_expt_1000_bf_scaffold_216_17
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13996..14745)
DNA (750bp) protein (250aa)
Electron transfer flavoprotein beta-subunit n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07H16_RHOP5 rbh
electron transfer flavoprotein subunit beta; K03521 electron transfer flavoprotein beta subunit rbh
Electron transfer flavoprotein beta-subunit {ECO:0000313|EMBL:ABJ08768.1}; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
SCNpilot_expt_1000_bf_scaffold_216_18
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14870..15442)
DNA (573bp) protein (191aa)
ATP/cobalamin adenosyltransferase n=1 Tax=Rhodopseudomonas palustris (strain TIE-1) RepID=B3QCC0_RHOPT rbh
ATP/cobalamin adenosyltransferase rbh
ATP/cobalamin adenosyltransferase {ECO:0000313|EMBL:ACF03721.1}; TaxID=395960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain TIE-1).;"
SCNpilot_expt_1000_bf_scaffold_216_19
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15490..15747)
DNA (258bp) protein (86aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PEC1_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS41002.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_216_20
Bradyrhizobium sp. S23321, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15867..16760
DNA (894bp) protein (298aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. S23321 RepID=I0GFR5_9BRAD rbh
hypothetical protein; K07058 membrane protein rbh
Uncharacterized protein {ECO:0000313|EMBL:BAL79602.1}; TaxID=335659 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. S23321.;"
SCNpilot_expt_1000_bf_scaffold_216_21
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16687..17940)
DNA (1254bp) protein (418aa)
Histidine kinase {ECO:0000313|EMBL:ABE64214.1}; EC=2.7.13.3 {ECO:0000313|EMBL:ABE64214.1};; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
Histidine kinase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QHT3_NITHX rbh
histidine kinase rbh
SCNpilot_expt_1000_bf_scaffold_216_22
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18008..18895)
DNA (888bp) protein (296aa)
glutamyl-Q tRNA(Asp) synthetase; K01894 glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-] rbh
Glutamyl-Q tRNA(Asp) synthetase n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IGS3_9BRAD rbh
Glutamyl-Q tRNA(Asp) synthetase {ECO:0000313|EMBL:ERF81679.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
SCNpilot_expt_1000_bf_scaffold_216_23
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18932..19693
DNA (762bp) protein (254aa)
HhH-GPD; K01247 DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
Possible DNA-3-methyladenine glycosidase II n=1 Tax=Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) RepID=Q6N0K7_RHOPA
DNA-3-methyladenine glycosidase {ECO:0000313|EMBL:KIZ35134.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
SCNpilot_expt_1000_bf_scaffold_216_24
unknown

Not on your lists

19690..19878
DNA (189bp) protein (63aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_216_25
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20021..20578
DNA (558bp) protein (186aa)
MFS transporter n=1 Tax=Bradyrhizobium elkanii RepID=UPI00031F9C9D rbh
MFS transporter {ECO:0000313|EMBL:KJC60638.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
HNH endonuclease rbh
SCNpilot_expt_1000_bf_scaffold_216_26
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20750..21598
DNA (849bp) protein (283aa)
3-hydroxybutyryl-CoA dehydrogenase {ECO:0000313|EMBL:EGP07193.1}; EC=1.1.1.157 {ECO:0000313|EMBL:EGP07193.1};; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
hbdA; 3-hydroxybutyryl-CoA dehydrogenase (EC:1.1.1.157); K00074 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157]
3-hydroxybutyryl-CoA dehydrogenase n=2 Tax=Bradyrhizobiaceae RepID=F7QNN9_9BRAD
SCNpilot_expt_1000_bf_scaffold_216_27
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21704..22921
DNA (1218bp) protein (406aa)
Arsenical pump membrane protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HFB2_9BRAD
Arsenical pump membrane protein {ECO:0000256|RuleBase:RU004993}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
arsenic pump membrane protein; K03893 arsenical pump membrane protein rbh
SCNpilot_expt_1000_bf_scaffold_216_28
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22930..23589)
DNA (660bp) protein (220aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI00031DB505
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE64466.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_expt_1000_bf_scaffold_216_29
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23731..23988)
DNA (258bp) protein (86aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7DQU2_BRAJP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL06670.1}; TaxID=1037409 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum USDA 6.;"
SCNpilot_expt_1000_bf_scaffold_216_30
Bradyrhizobium sp. BTAi1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24107..24883)
DNA (777bp) protein (259aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5EAN0_BRASB rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABQ33224.1}; TaxID=288000 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182).;"
Displaying items 1-30 of 154 in total

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