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SCNpilot_expt_1000_bf_scaffold_504

Search features with annotation key words

Displaying items 1-30 of 89 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_504_1
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(64..231)
DNA (168bp) protein (56aa)
UPI0003CF226C related cluster n=1 Tax=unknown RepID=UPI0003CF226C
Uncharacterized protein {ECO:0000313|EMBL:BAR58845.1}; TaxID=1355477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_504_2
Methylobacterium populi, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(827..1267)
DNA (441bp) protein (147aa)
Uncharacterized protein n=1 Tax=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) RepID=B1ZGJ0_METPB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB81224.1}; Flags: Precursor;; TaxID=441620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001).;"
SCNpilot_expt_1000_bf_scaffold_504_3
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1409..1576)
DNA (168bp) protein (56aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P9J1_9BRAD
Bradyrhizobium elkanii strain UASWS1015 Contig170, whole genome shotgun sequence {ECO:0000313|EMBL:KIU50300.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_504_4
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1796..2314)
DNA (519bp) protein (173aa)
RES domain-containing protein n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4R0K1_BREDI
Uncharacterized protein {ECO:0000313|EMBL:CEG10427.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_504_5
Sphingobium sp. HDIP04, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2479..3402)
DNA (924bp) protein (308aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI0003815097 rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EQB07227.1}; TaxID=428994 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. HDIP04.;"
SCNpilot_expt_1000_bf_scaffold_504_6
Sphingobium quisquiliarum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3715..4752)
DNA (1038bp) protein (346aa)
DNA primase n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0G3D5_9SPHN
DNA primase {ECO:0000313|EMBL:EQA98170.1}; TaxID=1329909 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium quisquiliarum P25.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_504_7
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4752..9059)
DNA (4308bp) protein (1436aa)
methylase n=1 Tax=Afipia birgiae RepID=UPI0002D25EAE rbh
Putative methylase/helicase {ECO:0000313|EMBL:BAI96857.1}; TaxID=452662 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum (strain NBRC 101211 / UT26S).;"
putative methylase/helicase rbh
SCNpilot_expt_1000_bf_scaffold_504_8
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9234..9491)
DNA (258bp) protein (86aa)
Uncharacterized protein n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IJR5_XANP2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS68258.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
SCNpilot_expt_1000_bf_scaffold_504_9
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9488..9904)
DNA (417bp) protein (139aa)
Uncharacterized protein n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IJR6_XANP2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS68259.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
SCNpilot_expt_1000_bf_scaffold_504_10
Sphingobium quisquiliarum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9999..12149)
DNA (2151bp) protein (717aa)
plasmid partitioning protein ParB n=1 Tax=Afipia birgiae RepID=UPI0002E7FF8C rbh
Plasmid partitioning protein ParB {ECO:0000313|EMBL:EQA98175.1}; TaxID=1329909 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium quisquiliarum P25.;"
nuclease; K03497 chromosome partitioning protein, ParB family
SCNpilot_expt_1000_bf_scaffold_504_11
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12311..13504)
DNA (1194bp) protein (398aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI00036C0966 rbh
Uncharacterized protein {ECO:0000313|EMBL:CEG10590.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_504_12
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13849..17292)
DNA (3444bp) protein (1148aa)
DEAD/DEAH box helicase-like n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q212T9_RHOPB rbh
DEAD/DEAH box helicase-like {ECO:0000313|EMBL:ABD88597.1}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
DEAD/DEAH box helicase-like protein rbh
SCNpilot_expt_1000_bf_scaffold_504_13
Burkholderia jiangsuensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17372..18148)
DNA (777bp) protein (259aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q212U0_RHOPB rbh
Uncharacterized protein {ECO:0000313|EMBL:KAK43701.1}; TaxID=1458357 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia jiangsuensis.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_504_14
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18167..18721)
DNA (555bp) protein (185aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7DNW2_BRAJP rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AHY56413.1}; TaxID=476282 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum SEMIA 5079.;"
SCNpilot_expt_1000_bf_scaffold_504_15
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18906..19688
DNA (783bp) protein (261aa)
Bll8178 protein n=2 Tax=Bradyrhizobium RepID=Q89BH4_BRADU rbh
hypothetical protein rbh
Bll8178 protein {ECO:0000313|EMBL:BAC53443.1}; TaxID=224911 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC; 14792 / USDA 110).;"
SCNpilot_expt_1000_bf_scaffold_504_16
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19772..19996
DNA (225bp) protein (75aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7DNW0_BRAJP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHY56415.1}; TaxID=476282 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum SEMIA 5079.;"
SCNpilot_expt_1000_bf_scaffold_504_17
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19993..22482
DNA (2490bp) protein (830aa)
Uncharacterized protein n=2 Tax=Bradyrhizobium RepID=G7DNV9_BRAJP rbh
Bll8177 protein {ECO:0000313|EMBL:BAC53442.1}; TaxID=224911 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC; 14792 / USDA 110).;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_504_18
RBG_16_Betaproteobacteria_58_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22484..23245)
DNA (762bp) protein (254aa)
hypothetical protein n=1 Tax=Methylosinus sp. LW4 RepID=UPI000365FDE8
hypothetical protein
Tax=RBG_16_Betaproteobacteria_58_11_curated
SCNpilot_expt_1000_bf_scaffold_504_19
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23238..24584)
DNA (1347bp) protein (449aa)
hypothetical protein n=1 Tax=Burkholderia thailandensis RepID=UPI00016A87C8 rbh
Uncharacterized protein {ECO:0000313|EMBL:CEG10609.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_504_20
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24581..25822)
DNA (1242bp) protein (414aa)
Integrase family protein n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IDF0_XANP2 rbh
integrase family protein rbh
Integrase family protein {ECO:0000313|EMBL:ABS66043.1}; Flags: Precursor;; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
SCNpilot_expt_1000_bf_scaffold_504_21
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25978..26595)
DNA (618bp) protein (206aa)
DNA repair protein RadC n=2 Tax=Oligotropha carboxidovorans RepID=B6JJV2_OLICO rbh
DNA repair protein RadC; K03630 DNA repair protein RadC rbh
DNA repair protein Radc {ECO:0000313|EMBL:AEI05272.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_expt_1000_bf_scaffold_504_22
Bradyrhizobium sp. WSM1253, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26751..27572)
DNA (822bp) protein (274aa)
map; methionine aminopeptidase; K01265 methionyl aminopeptidase [EC:3.4.11.18] rbh
Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01974}; Short=MAP {ECO:0000256|HAMAP-Rule:MF_01974};; Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01974};; EC=3.4.11.18 {ECO:0000256|HAMAP-Rule:MF_01974};; Peptidase M {ECO:0000256|HAMAP-Rule:MF_01974}; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
Methionine aminopeptidase n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QJ20_9BRAD rbh
SCNpilot_expt_1000_bf_scaffold_504_23
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27665..28378)
DNA (714bp) protein (238aa)
Sugar fermentation stimulation protein homolog n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QGC8_9BRAD
Sugar fermentation stimulation protein homolog {ECO:0000256|HAMAP-Rule:MF_00095}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
sugar fermentation stimulation protein A; K06206 sugar fermentation stimulation protein A
SCNpilot_expt_1000_bf_scaffold_504_24
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28382..29695)
DNA (1314bp) protein (438aa)
MscS Mechanosensitive ion channel n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q21BT2_RHOPB rbh
mechanosensitive ion channel MscS rbh
MscS Mechanosensitive ion channel {ECO:0000313|EMBL:ABD86154.1}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_expt_1000_bf_scaffold_504_25
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29942..31750
DNA (1809bp) protein (603aa)
Potassium/proton antiporter, CPA1 family n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SVT7_NITWN rbh
cvrA, nhaP2, ycgO; potassium/proton antiporter; K11105 cell volume regulation protein A rbh
Potassium/proton antiporter, CPA1 family {ECO:0000313|EMBL:ABA03604.1}; Flags: Precursor;; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
SCNpilot_expt_1000_bf_scaffold_504_26
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31739..32425)
DNA (687bp) protein (229aa)
molybdate ABC transporter ATP-binding protein; K02017 molybdate transport system ATP-binding protein [EC:3.6.3.29] rbh
Molybdate-transporting ATPase {ECO:0000256|SAAS:SAAS00055222}; EC=3.6.3.29 {ECO:0000256|SAAS:SAAS00055222};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
Molybdate ABC transporter, ATP-binding protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QR23_NITHX rbh
SCNpilot_expt_1000_bf_scaffold_504_27
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32428..33123)
DNA (696bp) protein (232aa)
Molybdenum transport system permease protein ModB n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QGC2_9BRAD
Molybdenum transport system permease protein ModB {ECO:0000313|EMBL:EGP09786.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
modB; molybdate ABC transporter permease protein; K02018 molybdate transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_504_28
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33129..33917)
DNA (789bp) protein (263aa)
Molybdate ABC transporter periplasmic molybdate-binding protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HGW3_9BRAD rbh
Molybdenum ABC transporter substrate-binding protein {ECO:0000313|EMBL:KJC57248.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
ABC transporter molybdenum-binding protein; K02020 molybdate transport system substrate-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_504_29
Bradyrhizobium sp. YR681, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34088..34591)
DNA (504bp) protein (168aa)
hypothetical protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI00035E22F8
Uncharacterized protein {ECO:0000313|EMBL:EJN10866.1}; Flags: Precursor;; TaxID=1144344 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. YR681.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_504_30
Bradyrhizobium sp. WSM1253, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34597..34806)
DNA (210bp) protein (70aa)
Molybdenum-pterin binding domain n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QJ12_9BRAD
Molybdenum-pterin binding domain {ECO:0000313|EMBL:EIG59768.1}; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
TOBE domain-containing protein
Displaying items 1-30 of 89 in total

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