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SCNpilot_expt_1000_bf_scaffold_1174

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1174_1
Bradyrhizobium sp. YR681, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(127..507)
DNA (381bp) protein (127aa)
Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=1 Tax=Bradyrhizobium sp. YR681 RepID=J2WKZ9_9BRAD
Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains {ECO:0000313|EMBL:EJN13300.1}; TaxID=1144344 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. YR681.;"
two-component response regulator
SCNpilot_expt_1000_bf_scaffold_1174_2
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(559..1398)
DNA (840bp) protein (280aa)
Zinc finger/thioredoxin putative n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q20WU6_RHOPB rbh
Zinc finger/thioredoxin putative rbh
Zinc finger/thioredoxin putative {ECO:0000313|EMBL:ABD90390.1}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_expt_1000_bf_scaffold_1174_3
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1575..2234
DNA (660bp) protein (220aa)
Cell division ATP-binding protein FtsE n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IGU1_9BRAD rbh
ABC transporter; K09812 cell division transport system ATP-binding protein rbh
Cell division ATP-binding protein FtsE {ECO:0000313|EMBL:ERF81704.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
SCNpilot_expt_1000_bf_scaffold_1174_4
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2287..3198
DNA (912bp) protein (304aa)
Cell division protein n=2 Tax=Bradyrhizobium RepID=H5YR76_9BRAD rbh
Cell division protein FtsX {ECO:0000313|EMBL:KJC56476.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
FtsX; cell division protein; K09811 cell division transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_1174_5
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3304..4035
DNA (732bp) protein (244aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI00037C1F14 rbh
Uncharacterized protein {ECO:0000313|EMBL:KJC56477.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_1174_6
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4047..4820
DNA (774bp) protein (258aa)
phospholipid/glycerol acyltransferase; K00655 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51] rbh
Phospholipid/glycerol acyltransferase n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q20WV0_RHOPB rbh
Acyl-phosphate glycerol 3-phosphate acyltransferase {ECO:0000313|EMBL:KIZ39099.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
SCNpilot_expt_1000_bf_scaffold_1174_7
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4824..5525)
DNA (702bp) protein (234aa)
ChaC-like protein n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SV44_NITWN rbh
Gamma-glutamyl cyclotransferase {ECO:0000313|EMBL:KJC47128.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
ChaC-like protein; K07232 cation transport protein ChaC rbh
SCNpilot_expt_1000_bf_scaffold_1174_8
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5538..6731
DNA (1194bp) protein (398aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QQD7_NITHX rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABE61560.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_expt_1000_bf_scaffold_1174_9
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6833..7771)
DNA (939bp) protein (313aa)
cyclohexadienyl dehydrogenase; K00220 cyclohexadieny/prephenate dehydrogenase [EC:1.3.1.43 1.3.1.12] rbh
cyclohexadienyl dehydrogenase n=1 Tax=Afipia birgiae RepID=UPI00031BABA0
Cyclohexadieny/prephenate dehydrogenase {ECO:0000313|EMBL:ERF81716.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
SCNpilot_expt_1000_bf_scaffold_1174_10
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7768..8895)
DNA (1128bp) protein (376aa)
Histidinol-phosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_01023}; EC=2.6.1.9 {ECO:0000256|HAMAP-Rule:MF_01023};; Imidazole acetol-phosphate transaminase {ECO:0000256|HAMAP-Rule:MF_01023}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
histidinol-phosphate aminotransferase (EC:2.6.1.9); K00817 histidinol-phosphate aminotransferase [EC:2.6.1.9] rbh
histidinol-phosphate aminotransferase n=1 Tax=Bradyrhizobium elkanii RepID=UPI000379FE57 rbh
SCNpilot_expt_1000_bf_scaffold_1174_11
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8892..9746)
DNA (855bp) protein (285aa)
Chorismate mutase n=2 Tax=Rhodopseudomonas palustris RepID=Q6N1G7_RHOPA rbh
aro; hypothetical protein rbh
Chorismate mutase {ECO:0000313|EMBL:CAE29879.1}; TaxID=258594 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009).;"
SCNpilot_expt_1000_bf_scaffold_1174_12
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10090..11292
DNA (1203bp) protein (401aa)
metX; homoserine O-acetyltransferase (EC:2.3.1.31); K00641 homoserine O-acetyltransferase [EC:2.3.1.31] rbh
Homoserine O-acetyltransferase {ECO:0000256|HAMAP-Rule:MF_00296, ECO:0000256|SAAS:SAAS00070949}; EC=2.3.1.31 {ECO:0000256|HAMAP-Rule:MF_00296, ECO:0000256|SAAS:SAAS00070942};; Homoserine O-trans-acetylase {ECO:0000256|HAMAP-Rule:MF_00296}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
Homoserine O-acetyltransferase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=METX_NITHX rbh
SCNpilot_expt_1000_bf_scaffold_1174_13
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11294..11962
DNA (669bp) protein (223aa)
Methionine biosynthesis MetW n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QQD2_NITHX rbh
methionine biosynthesis MetW rbh
Methionine biosynthesis MetW {ECO:0000313|EMBL:ABE61565.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_expt_1000_bf_scaffold_1174_14
unknown

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comp(12272..12487)
DNA (216bp) protein (72aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1174_15
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12497..12874
DNA (378bp) protein (126aa)
CHAP domain containing protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V3K4_9BRAD
CHAP domain containing protein {ECO:0000313|EMBL:EFI52534.1}; Flags: Precursor;; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1174_16
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13190..15829
DNA (2640bp) protein (880aa)
Chaperone protein ClpB n=2 Tax=Rhodopseudomonas palustris RepID=CLPB_RHOPA rbh
Chaperone protein ClpB {ECO:0000256|RuleBase:RU362034}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
ATP-dependent chaperone ClpB; K03695 ATP-dependent Clp protease ATP-binding subunit ClpB rbh
SCNpilot_expt_1000_bf_scaffold_1174_17
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15903..18005)
DNA (2103bp) protein (701aa)
Peptidase M23B n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q20YI7_RHOPB rbh
Peptidase M23B {ECO:0000313|EMBL:ABD89799.1}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
peptidase M23B rbh
Displaying 17 items

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