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SCNpilot_expt_1000_bf_scaffold_20

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Displaying items 1-30 of 310 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_20_1
unknown

Not on your lists

comp(382..864)
DNA (483bp) protein (161aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_20_2
Pelobacter carbinolicus, Pelobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1209..1502)
DNA (294bp) protein (98aa)
hypothetical protein id=7717271 bin=BACIGN_2 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=BACIGN_2 organism_group=Unknown_CP
hypothetical protein
CRISPR-associated endoribonuclease Cas2 {ECO:0000313|EMBL:ABA88218.1}; TaxID=338963 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Pelobacteraceae; Pelobacter.;" source="Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1).;"
SCNpilot_expt_1000_bf_scaffold_20_3

Not on your lists

comp(1486..2415)
DNA (930bp) protein (310aa)
cas1; CRISPR-associated protein Cas1; K15342 CRISP-associated protein Cas1 id=7717272 bin=BACIGN_2 species=uncultured organism genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=BACIGN_2 organism_group=Unknown_CP rbh
CRISPR-associated protein Cas1 {ECO:0000313|EMBL:AGF87261.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
cas1; CRISPR-associated protein Cas1; K15342 CRISP-associated protein Cas1
SCNpilot_expt_1000_bf_scaffold_20_4
Methanosarcina sp. 1.H.T.1A.1, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(2654..3346)
DNA (693bp) protein (231aa)
CRISPR-associated protein, Cse3 family id=7717273 bin=BACIGN_2 species=Methanococcoides burtonii genus=Methanococcoides taxon_order=Methanosarcinales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=BACIGN_2 organism_group=Unknown_CP rbh
Uncharacterized protein {ECO:0000313|EMBL:KKH96221.1}; TaxID=1483602 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina sp. 1.H.T.1A.1.;"
CRISPR-associated Cse3 family protein
SCNpilot_expt_1000_bf_scaffold_20_5
RBG_13_RIF03_48_7_curated, RIF3, Bacteria

Not on your lists

comp(3343..4086)
DNA (744bp) protein (248aa)
CRISPR-associated protein Cas5 family id=7717274 bin=BACIGN_2 species=unknown genus=Pseudoalteromonas taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=BACIGN_2 organism_group=Unknown_CP rbh
CRISPR-associated protein Cas5 family
Tax=RBG_13_RIF03_48_7_curated
SCNpilot_expt_1000_bf_scaffold_20_6
Meiothermus ruber, Meiothermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

comp(4088..5353)
DNA (1266bp) protein (422aa)
Cse4 family CRISPR-associated protein id=7717275 bin=BACIGN_2 species=Meiothermus ruber genus=Meiothermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=BACIGN_2 organism_group=Unknown_CP rbh
Cse4 family CRISPR-associated protein
Strain A contig00088, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ53679.1}; TaxID=277 species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Meiothermus.;" source="Meiothermus ruber.;"
SCNpilot_expt_1000_bf_scaffold_20_7
unknown

Not on your lists

comp(5368..5979)
DNA (612bp) protein (204aa)
Uncharacterized protein id=7717276 bin=BACIGN_2 species=Fibrisoma limi genus=Fibrisoma taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP rbh
SCNpilot_expt_1000_bf_scaffold_20_8
Fibrisoma limi, Fibrisoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(6027..7535)
DNA (1509bp) protein (503aa)
CRISPR-associated protein, Cse1 family id=7717277 bin=BACIGN_2 species=Fibrisoma limi genus=Fibrisoma taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP rbh
Uncharacterized protein {ECO:0000313|EMBL:CCH51596.1}; TaxID=1185876 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrisoma.;" source="Fibrisoma limi BUZ 3.;"
CRISPR-associated protein, Cse1 family
SCNpilot_expt_1000_bf_scaffold_20_9
Fibrisoma limi, Fibrisoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(7640..10531)
DNA (2892bp) protein (964aa)
helicase; K07012 id=7717278 bin=BACIGN_2 species=Fibrisoma limi genus=Fibrisoma taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP rbh
Uncharacterized protein {ECO:0000313|EMBL:CCH51597.1}; TaxID=1185876 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrisoma.;" source="Fibrisoma limi BUZ 3.;"
helicase; K07012
SCNpilot_expt_1000_bf_scaffold_20_10
GWF2_RIF_IGX_33_9_curated, RIF-IGX, Bacteria

Not on your lists

comp(10551..11072)
DNA (522bp) protein (174aa)
id=7717279 bin=BACIGN_2 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=BACIGN_2 organism_group=Unknown_CP rbh
Tax=GWF2_RIF_IGX_33_9_curated
SCNpilot_expt_1000_bf_scaffold_20_11
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

comp(11142..12113)
DNA (972bp) protein (324aa)
transcriptional regulator id=7717280 bin=BACIGN_2 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=BACIGN_2 organism_group=Unknown_CP rbh
putative transcriptional regulator
Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
SCNpilot_expt_1000_bf_scaffold_20_12
Methanosarcina mazei, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(12197..12940)
DNA (744bp) protein (248aa)
hypothetical protein id=7717281 bin=BACIGN_2 species=Methanosarcina mazei genus=Methanosarcina taxon_order=Methanosarcinales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=BACIGN_2 organism_group=Unknown_CP rbh
Ankyrin repeat-containing protein
Putative ankyrin repeat protein {ECO:0000313|EMBL:AKB72524.1}; TaxID=1434113 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina mazei C16.;"
SCNpilot_expt_1000_bf_scaffold_20_13
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

comp(12956..13522)
DNA (567bp) protein (189aa)
Hypothetical conserved protein id=7717282 bin=BACIGN_2 species=uncultured Bacteroidetes bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP rbh
hypothetical protein
Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
SCNpilot_expt_1000_bf_scaffold_20_14
uncultured Bacteroidetes bacterium, Bacteroidetes, Bacteria

Not on your lists

comp(13538..13954)
DNA (417bp) protein (139aa)
hypothetical protein id=7717283 bin=BACIGN_2 species=uncultured Bacteroidetes bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP
Hypothetical conserved protein {ECO:0000313|EMBL:BAL55105.1}; TaxID=152509 species="Bacteria; Bacteroidetes; environmental samples.;" source="uncultured Bacteroidetes bacterium.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_20_15
GWF2_RIF_IGX_33_9_curated, RIF-IGX, Bacteria

Not on your lists

comp(13984..14799)
DNA (816bp) protein (272aa)
id=7717284 bin=BACIGN_2 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=BACIGN_2 organism_group=Unknown_CP rbh
Tax=GWF2_RIF_IGX_33_9_curated
SCNpilot_expt_1000_bf_scaffold_20_16
Melioribacter roseus, Melioribacter, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

14998..15951
DNA (954bp) protein (318aa)
Putative Zn-dependent hydrolase id=7717285 bin=BACIGN_2 species=Melioribacter roseus genus=Melioribacter taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=BACIGN_2 organism_group=Unknown_CP rbh
beta-lactamase domain-containing protein
Beta-lactamase domain-containing protein {ECO:0000313|EMBL:AFN73925.1}; TaxID=1191523 species="Bacteria; Ignavibacteriae; Ignavibacteria; Ignavibacteriales; Melioribacteraceae; Melioribacter.;" source="Melioribacter roseus (strain JCM 17771 / P3M-2).;"
SCNpilot_expt_1000_bf_scaffold_20_17
unknown

Not on your lists

comp(15957..17069)
DNA (1113bp) protein (371aa)
id=7717286 bin=BACIGN_2 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=BACIGN_2 organism_group=Unknown_CP rbh
SCNpilot_expt_1000_bf_scaffold_20_18
Pelodictyon phaeoclathratiforme, Pelodictyon, Chlorobiales, Chlorobia, Chlorobi, Bacteria

Not on your lists

17084..18421
DNA (1338bp) protein (446aa)
recombination factor protein RarA; K07478 putative ATPase id=7717287 bin=BACIGN_2 species=Pelodictyon phaeoclathratiforme genus=Pelodictyon taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=BACIGN_2 organism_group=Unknown_CP rbh
recombination factor protein RarA; K07478 putative ATPase rbh
AAA ATPase central domain protein {ECO:0000313|EMBL:ACF44111.1}; TaxID=324925 species="Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae; Chlorobium/Pelodictyon group; Pelodictyon.;" source="Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1).;"
SCNpilot_expt_1000_bf_scaffold_20_19
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

18486..19037
DNA (552bp) protein (184aa)
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily id=7717288 bin=BACIGN_2 species=Runella slithyformis genus=Runella taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP rbh
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily
Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
SCNpilot_expt_1000_bf_scaffold_20_20
unknown

Not on your lists

19064..20395
DNA (1332bp) protein (444aa)
id=7717289 bin=BACIGN_2 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=BACIGN_2 organism_group=Unknown_CP rbh
SCNpilot_expt_1000_bf_scaffold_20_21
unknown

Not on your lists

20453..20725
DNA (273bp) protein (91aa)
id=7717290 bin=BACIGN_2 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=BACIGN_2 organism_group=Unknown_CP
SCNpilot_expt_1000_bf_scaffold_20_22
unknown

Not on your lists

21062..21757
DNA (696bp) protein (232aa)
id=7717291 bin=BACIGN_2 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=BACIGN_2 organism_group=Unknown_CP rbh
SCNpilot_expt_1000_bf_scaffold_20_23
BJP_IG2069_Ignavibacteriae_38_11, Ignavibacteriae, Bacteria

Not on your lists

comp(21876..23075)
DNA (1200bp) protein (400aa)
ErfK/YbiS/YcfS/YnhG family protein id=7717292 bin=BACIGN_2 species=Gillisia marina genus=Gillisia taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP rbh
ErfK/YbiS/YcfS/YnhG family protein
Tax=BJP_IG2069_Ignavibacteriae_38_11
SCNpilot_expt_1000_bf_scaffold_20_24
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23090..23899
DNA (810bp) protein (270aa)
putative glutamine cyclotransferase id=7717293 bin=BACIGN_2 species=Brevundimonas diminuta genus=Brevundimonas taxon_order=Caulobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=BACIGN_2 organism_group=Unknown_CP rbh
Glutamine cyclotransferase {ECO:0000313|EMBL:EKY28001.1}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
putative glutamine cyclotransferase
SCNpilot_expt_1000_bf_scaffold_20_25
Geobacter soli, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23896..24570
DNA (675bp) protein (225aa)
serine/threonine protein phosphatase; K07313 serine/threonine protein phosphatase 1 [EC:3.1.3.16] id=7717294 bin=BACIGN_2 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=BACIGN_2 organism_group=Unknown_CP rbh
metallophosphoesterase; K07313 serine/threonine protein phosphatase 1 [EC:3.1.3.16]
Serine/threonine protein phosphatase {ECO:0000313|EMBL:KIE41517.1}; TaxID=1510391 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter soli.;"
SCNpilot_expt_1000_bf_scaffold_20_26
unknown

Not on your lists

24682..27900
DNA (3219bp) protein (1073aa)
id=7717295 bin=BACIGN_2 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=BACIGN_2 organism_group=Unknown_CP rbh
SCNpilot_expt_1000_bf_scaffold_20_27
unknown

Not on your lists

28018..28689
DNA (672bp) protein (224aa)
id=7717296 bin=BACIGN_2 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=BACIGN_2 organism_group=Unknown_CP rbh
SCNpilot_expt_1000_bf_scaffold_20_28
unknown

Not on your lists

comp(28623..28769)
DNA (147bp) protein (49aa)
id=7717297 bin=BACIGN_2 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=BACIGN_2 organism_group=Unknown_CP
SCNpilot_expt_1000_bf_scaffold_20_29
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

comp(28766..30352)
DNA (1587bp) protein (529aa)
Putative RNA-processing exonuclease id=7717298 bin=BACIGN_2 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=BACIGN_2 organism_group=Unknown_CP rbh
Putative RNA-processing exonuclease rbh
Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
SCNpilot_expt_1000_bf_scaffold_20_30
unknown

Not on your lists

comp(31021..31161)
DNA (141bp) protein (47aa)

This feature has no annotations

Displaying items 1-30 of 310 in total

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