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SCNpilot_expt_1000_bf_scaffold_34

Search features with annotation key words

Displaying items 1-30 of 242 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_34_1
GWF2_RIF_IGX_33_9_curated, RIF-IGX, Bacteria

Not on your lists

3..749
DNA (747bp) protein (249aa)
RHS repeat-associated core domain-containing protein id=7719132 bin=BACIGN_2 species=Fulvivirga imtechensis genus=Fulvivirga taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP rbh
Tax=GWF2_RIF_IGX_33_9_curated
SCNpilot_expt_1000_bf_scaffold_34_2
GWF2_RIF_IGX_33_9_curated, RIF-IGX, Bacteria

Not on your lists

2109..2924
DNA (816bp) protein (272aa)
RHS repeat-associated core domain-containing protein id=7717884 bin=BACIGN_2 species=Pseudanabaena biceps genus=Pseudanabaena taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=BACIGN_2 organism_group=Unknown_CP rbh
Tax=GWF2_RIF_IGX_33_9_curated
SCNpilot_expt_1000_bf_scaffold_34_3
unknown

Not on your lists

comp(4530..4820)
DNA (291bp) protein (97aa)
id=7717885 bin=BACIGN_2 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=BACIGN_2 organism_group=Unknown_CP
SCNpilot_expt_1000_bf_scaffold_34_4
GWA2_Ignavibacteria_54_16_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(4817..5287)
DNA (471bp) protein (157aa)
Putative stress-responsive transcriptional regulator id=7717886 bin=BACIGN_2 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=BACIGN_2 organism_group=Unknown_CP rbh
Putative stress-responsive transcriptional regulator
Tax=GWA2_Ignavibacteria_54_16_curated
SCNpilot_expt_1000_bf_scaffold_34_5
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(5378..6565)
DNA (1188bp) protein (396aa)
hypothetical protein id=7717887 bin=BACIGN_2 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=BACIGN_2 organism_group=Unknown_CP rbh
Uncharacterized protein {ECO:0000313|EMBL:AKD56277.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_34_6
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

comp(6567..7994)
DNA (1428bp) protein (476aa)
hypothetical protein; K07047 id=7717888 bin=BACIGN_2 species=Sorangium cellulosum genus=Sorangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=BACIGN_2 organism_group=Unknown_CP rbh
hypothetical protein; K07047
Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
SCNpilot_expt_1000_bf_scaffold_34_7
CG_Ignavi_02, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(8041..8388)
DNA (348bp) protein (116aa)
Ferredoxin id=7717889 bin=BACIGN_2 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=BACIGN_2 organism_group=Unknown_CP
4Fe-4S ferredoxin iron-sulfur binding domain protein
Tax=CG_Ignavi_02
SCNpilot_expt_1000_bf_scaffold_34_8
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

8522..10774
DNA (2253bp) protein (751aa)
hypothetical protein id=7717890 bin=BACIGN_2 species=Salinibacter ruber genus=Salinibacter taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP rbh
hypothetical protein rbh
Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
SCNpilot_expt_1000_bf_scaffold_34_9
GWF2_RIF_IGX_33_9_curated, RIF-IGX, Bacteria

Not on your lists

10808..11710
DNA (903bp) protein (301aa)
id=7717891 bin=BACIGN_2 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=BACIGN_2 organism_group=Unknown_CP rbh
Tax=GWF2_RIF_IGX_33_9_curated
SCNpilot_expt_1000_bf_scaffold_34_10
BJP_IG2069_Ignavibacteriae_38_11, Ignavibacteriae, Bacteria

Not on your lists

comp(11714..13198)
DNA (1485bp) protein (495aa)
dacB; D-alanyl-D-alanine carboxypeptidase; K07259 D-alanyl-D-alanine carboxypeptidase / D-alanyl-D-alanine-endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-] id=7717892 bin=BACIGN_2 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=BACIGN_2 organism_group=Unknown_CP rbh
dacB; D-alanyl-D-alanine carboxypeptidase; K07259 D-alanyl-D-alanine carboxypeptidase / D-alanyl-D-alanine-endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-] rbh
Tax=BJP_IG2069_Ignavibacteriae_38_11
SCNpilot_expt_1000_bf_scaffold_34_11
Escherichia sp. KTE159, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(13198..14442)
DNA (1245bp) protein (415aa)
nucleoside-triphosphatase rdgB (EC:3.6.1.15); K02428 dITP/XTP pyrophosphatase [EC:3.6.1.19] id=7717893 bin=BACIGN_2 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=BACIGN_2 organism_group=Unknown_CP rbh
nucleoside-triphosphatase rdgB (EC:3.6.1.15); K02428 dITP/XTP pyrophosphatase [EC:3.6.1.19]
dITP/XTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; EC=3.6.1.19 {ECO:0000256|HAMAP-Rule:MF_01405};; Non-canonical purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Non-standard purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate diphosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; TaxID=1182732 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriace
SCNpilot_expt_1000_bf_scaffold_34_12
R_Ignavibacteria_55_14, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(14439..15527)
DNA (1089bp) protein (363aa)
serine--glyoxylate transaminase id=7717894 bin=BACIGN_2 species=Chloroherpeton thalassium genus=Chloroherpeton taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=BACIGN_2 organism_group=Unknown_CP rbh
serine--glyoxylate transaminase
Tax=RIFCSPLOWO2_02_FULL_Ignavibacteria_55_14_curated
SCNpilot_expt_1000_bf_scaffold_34_13
GWF2_RIF_IGX_33_9_curated, RIF-IGX, Bacteria

Not on your lists

comp(15524..16315)
DNA (792bp) protein (264aa)
tRNA/rRNA methyltransferase SpoU; K03437 RNA methyltransferase, TrmH family id=7717895 bin=BACIGN_2 species=Bacillus macauensis genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=BACIGN_2 organism_group=Unknown_CP rbh
tRNA/rRNA methyltransferase SpoU; K03437 RNA methyltransferase, TrmH family
Tax=GWF2_RIF_IGX_33_9_curated
SCNpilot_expt_1000_bf_scaffold_34_14
R_Fluviicola_43_260, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(16367..17593)
DNA (1227bp) protein (409aa)
hypothetical protein id=7717896 bin=BACIGN_2 species=Niastella koreensis genus=Niastella taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP rbh
hypothetical protein
Tax=RIFCSPHIGHO2_02_FULL_Fluviicola_43_260_curated
SCNpilot_expt_1000_bf_scaffold_34_15
RIFCSPLOWO2_12_FULL_Flavobacteria_31_7_curated, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(17590..18015)
DNA (426bp) protein (142aa)
hypothetical protein id=7717897 bin=BACIGN_2 species=Flavobacterium psychrophilum genus=Flavobacterium taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Flavobacteria_31_7_curated
SCNpilot_expt_1000_bf_scaffold_34_16
Flavobacterium limnosediminis, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(18025..19212)
DNA (1188bp) protein (396aa)
hypothetical protein id=7717898 bin=BACIGN_2 species=Haliscomenobacter hydrossis genus=Haliscomenobacter taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP rbh
Uncharacterized protein {ECO:0000313|EMBL:ESU28497.1}; TaxID=1341181 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium limnosediminis JC2902.;"
thiol oxidoreductase rbh
SCNpilot_expt_1000_bf_scaffold_34_17
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

comp(19416..20009)
DNA (594bp) protein (198aa)
alkyl hydroperoxide reductase id=7717899 bin=BACIGN_2 species=Chloroherpeton thalassium genus=Chloroherpeton taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=BACIGN_2 organism_group=Unknown_CP rbh
alkyl hydroperoxide reductase
Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
SCNpilot_expt_1000_bf_scaffold_34_18
GWA2_Ignavibacteria_54_16_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(20255..21745)
DNA (1491bp) protein (497aa)
leucyl aminopeptidase; K01255 leucyl aminopeptidase [EC:3.4.11.1] id=7717900 bin=BACIGN_2 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=BACIGN_2 organism_group=Unknown_CP rbh
leucyl aminopeptidase; K01255 leucyl aminopeptidase [EC:3.4.11.1]
Tax=GWA2_Ignavibacteria_54_16_curated
SCNpilot_expt_1000_bf_scaffold_34_19
BJP_IG2069_Ignavibacteriae_38_11, Ignavibacteriae, Bacteria

Not on your lists

comp(21819..24314)
DNA (2496bp) protein (832aa)
Penicillin amidase; K01434 penicillin amidase [EC:3.5.1.11] id=7717901 bin=BACIGN_2 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=BACIGN_2 organism_group=Unknown_CP rbh
Penicillin amidase; K01434 penicillin amidase [EC:3.5.1.11] rbh
Tax=BJP_IG2069_Ignavibacteriae_38_11
SCNpilot_expt_1000_bf_scaffold_34_20
GWF2_RIF_IGX_33_9_curated, RIF-IGX, Bacteria

Not on your lists

comp(24305..25291)
DNA (987bp) protein (329aa)
NAD-dependent epimerase/dehydratase id=7717902 bin=BACIGN_2 species=Chloroherpeton thalassium genus=Chloroherpeton taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=BACIGN_2 organism_group=Unknown_CP rbh
NAD-dependent epimerase/dehydratase
Tax=GWF2_RIF_IGX_33_9_curated
SCNpilot_expt_1000_bf_scaffold_34_21
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

comp(25345..29226)
DNA (3882bp) protein (1294aa)
cell wall surface anchor family protein (EC:3.2.1.-)
glucose/sorbosone dehydrogenase-related id=7717903 bin=BACIGN_2 species=Solitalea canadensis genus=Solitalea taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP rbh
Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
SCNpilot_expt_1000_bf_scaffold_34_22
GWF2_RIF_IGX_33_9_curated, RIF-IGX, Bacteria

Not on your lists

comp(29296..33351)
DNA (4056bp) protein (1352aa)
hypothetical protein id=7717904 bin=BACIGN_2 species=Cytophaga hutchinsonii genus=Cytophaga taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP rbh
hypothetical protein
Tax=GWF2_RIF_IGX_33_9_curated
SCNpilot_expt_1000_bf_scaffold_34_23
Bacillus badius, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(33484..35202)
DNA (1719bp) protein (573aa)
oligoendopeptidase F id=7717905 bin=BACIGN_2 species=Treponema vincentii genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=BACIGN_2 organism_group=Unknown_CP rbh
Oligoendopeptidase F {ECO:0000313|EMBL:KIL80390.1}; TaxID=1455 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus badius.;"
oligoendopeptidase F rbh
SCNpilot_expt_1000_bf_scaffold_34_24
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

comp(35249..37057)
DNA (1809bp) protein (603aa)
Tetratricopeptide repeat domain protein id=7717906 bin=BACIGN_2 species=uncultured Bacteroidetes bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP rbh
hypothetical protein
Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
SCNpilot_expt_1000_bf_scaffold_34_25
GWA2_Ignavibacteriae_55_25_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(37054..38265)
DNA (1212bp) protein (404aa)
peptidase M24 id=7717907 bin=BACIGN_2 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=BACIGN_2 organism_group=Unknown_CP rbh
peptidase M24 rbh
Tax=GWA2_Ignavibacteriae_55_25_curated
SCNpilot_expt_1000_bf_scaffold_34_26
uncultured alpha proteobacterium, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(38262..39257)
DNA (996bp) protein (332aa)
LAO/AO transport system ATPase; K07588 LAO/AO transport system kinase [EC:2.7.-.-] id=7717908 bin=BACIGN_2 species=uncultured alpha proteobacterium genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=BACIGN_2 organism_group=Unknown_CP rbh
LAO/AO transport system ATPase; K07588 LAO/AO transport system kinase [EC:2.7.-.-]
Arginine/ornithine transport system ATPase {ECO:0000313|EMBL:BAL56491.1}; TaxID=91750 species="Bacteria; Proteobacteria; Alphaproteobacteria; environmental samples.;" source="uncultured alpha proteobacterium.;"
SCNpilot_expt_1000_bf_scaffold_34_27
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

comp(39269..41104)
DNA (1836bp) protein (612aa)
glucosamine--fructose-6-phosphate aminotransferase (EC:2.6.1.16); K00820 glucosamine--fructose-6-phosphate aminotransferase (isomerizing) [EC:2.6.1.16] id=7717909 bin=BACIGN_2 species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=BACIGN_2 organism_group=Unknown_CP rbh
glucosamine--fructose-6-phosphate aminotransferase (EC:2.6.1.16); K00820 glucosamine--fructose-6-phosphate aminotransferase (isomerizing) [EC:2.6.1.16] rbh
Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
SCNpilot_expt_1000_bf_scaffold_34_28
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

comp(41163..43676)
DNA (2514bp) protein (838aa)
Organic solvent tolerance protein OstA id=7717910 bin=BACIGN_2 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=BACIGN_2 organism_group=Unknown_CP rbh
Organic solvent tolerance protein OstA rbh
Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
SCNpilot_expt_1000_bf_scaffold_34_29
unknown

Not on your lists

comp(43694..44509)
DNA (816bp) protein (272aa)
id=7717911 bin=BACIGN_2 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=BACIGN_2 organism_group=Unknown_CP rbh
SCNpilot_expt_1000_bf_scaffold_34_30
BJP_IG2069_Ignavibacteriae_38_11, Ignavibacteriae, Bacteria

Not on your lists

44608..45102
DNA (495bp) protein (165aa)
hypothetical protein; K01737 6-pyruvoyl tetrahydrobiopterin synthase [EC:4.2.3.12] id=7717912 bin=BACIGN_2 species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP rbh
hypothetical protein; K01737 6-pyruvoyl tetrahydrobiopterin synthase [EC:4.2.3.12]
Tax=BJP_IG2069_Ignavibacteriae_38_11
Displaying items 1-30 of 242 in total

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