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SCNpilot_expt_1000_bf_scaffold_85

Search features with annotation key words

Displaying items 1-30 of 203 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_85_1
unknown

Not on your lists

669..1229
DNA (561bp) protein (187aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_85_2
unknown

Not on your lists

1996..3477
DNA (1482bp) protein (494aa)
id=7718123 bin=BACIGN_2 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=BACIGN_2 organism_group=Unknown_CP rbh
SCNpilot_expt_1000_bf_scaffold_85_3
unknown

Not on your lists

3481..4200
DNA (720bp) protein (240aa)
id=7718124 bin=BACIGN_2 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=BACIGN_2 organism_group=Unknown_CP rbh
SCNpilot_expt_1000_bf_scaffold_85_4
unknown

Not on your lists

4402..5112
DNA (711bp) protein (237aa)
id=7718125 bin=BACIGN_2 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=BACIGN_2 organism_group=Unknown_CP rbh
SCNpilot_expt_1000_bf_scaffold_85_5
unknown

Not on your lists

5768..6490
DNA (723bp) protein (241aa)
id=7718126 bin=BACIGN_2 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=BACIGN_2 organism_group=Unknown_CP rbh
SCNpilot_expt_1000_bf_scaffold_85_6
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

6960..8210
DNA (1251bp) protein (417aa)
processing peptidase id=7718127 bin=BACIGN_2 species=Anaerophaga thermohalophila genus=Anaerophaga taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP rbh
processing peptidase
Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
SCNpilot_expt_1000_bf_scaffold_85_7
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8238..9404)
DNA (1167bp) protein (389aa)
aminotransferase (EC:2.6.1.-); K14287 methionine aminotransferase [EC:2.6.1.-] id=7718128 bin=BACIGN_2 species=Fibrella aestuarina genus=Fibrella taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP rbh
aminotransferase
Aminotransferase {ECO:0000313|EMBL:AGP41986.1}; TaxID=1254432 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum So0157-2.;"
SCNpilot_expt_1000_bf_scaffold_85_8
Fibrisoma limi, Fibrisoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(9421..10410)
DNA (990bp) protein (330aa)
hypothetical protein id=7718129 bin=BACIGN_2 species=Fibrisoma limi genus=Fibrisoma taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP rbh
Uncharacterized protein {ECO:0000313|EMBL:CCH55184.1}; TaxID=1185876 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrisoma.;" source="Fibrisoma limi BUZ 3.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_85_9
Acaryochloris marina, Acaryochloris, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

10490..11299
DNA (810bp) protein (270aa)
hypothetical protein id=7718130 bin=BACIGN_2 species=Acaryochloris marina genus=Acaryochloris taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=BACIGN_2 organism_group=Unknown_CP rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABW31277.1}; TaxID=329726 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Acaryochloris.;" source="Acaryochloris marina (strain MBIC 11017).;"
SCNpilot_expt_1000_bf_scaffold_85_10

Not on your lists

comp(11321..11977)
DNA (657bp) protein (219aa)
TetR family transcriptional regulator id=7718131 bin=BACIGN_2 species=Chloroherpeton thalassium genus=Chloroherpeton taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=BACIGN_2 organism_group=Unknown_CP rbh
Marine sediment metagenome DNA, contig: S01H4_S13383 {ECO:0000313|EMBL:GAG90814.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
TetR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_85_11
BJP_IG2069_Ignavibacteriae_38_11, Ignavibacteriae, Bacteria

Not on your lists

comp(11999..12658)
DNA (660bp) protein (220aa)
transaldolase; K00616 transaldolase [EC:2.2.1.2] id=7718132 bin=BACIGN_2 species=unknown genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=BACIGN_2 organism_group=Unknown_CP rbh
transaldolase; K00616 transaldolase [EC:2.2.1.2]
Tax=BJP_IG2069_Ignavibacteriae_38_11
SCNpilot_expt_1000_bf_scaffold_85_12
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

comp(12767..13528)
DNA (762bp) protein (254aa)
id=7718133 bin=BACIGN_2 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=BACIGN_2 organism_group=Unknown_CP rbh
Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
SCNpilot_expt_1000_bf_scaffold_85_13
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

comp(13525..13944)
DNA (420bp) protein (140aa)
tRNA/rRNA methyltransferase SpoU id=7718134 bin=BACIGN_2 species=Pelodictyon phaeoclathratiforme genus=Pelodictyon taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=BACIGN_2 organism_group=Unknown_CP
tRNA/rRNA methyltransferase SpoU
Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
SCNpilot_expt_1000_bf_scaffold_85_14
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

14080..15018
DNA (939bp) protein (313aa)
Acid phosphatase {ECO:0000313|EMBL:EEF57801.1}; EC=3.1.3.2 {ECO:0000313|EMBL:EEF57801.1};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
putative phosphatase id=7718135 bin=BACIGN_2 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=BACIGN_2 organism_group=Unknown_CP rbh
putative phosphatase
SCNpilot_expt_1000_bf_scaffold_85_15
GWF2_RIF_IGX_33_9_curated, RIF-IGX, Bacteria

Not on your lists

15067..18090
DNA (3024bp) protein (1008aa)
hypothetical protein id=7718136 bin=BACIGN_2 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=BACIGN_2 organism_group=Unknown_CP rbh
hypothetical protein
Tax=GWF2_RIF_IGX_33_9_curated
SCNpilot_expt_1000_bf_scaffold_85_16
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

18138..19769
DNA (1632bp) protein (544aa)
Periplasmic protease; K03797 carboxyl-terminal processing protease [EC:3.4.21.102] id=7718137 bin=BACIGN_2 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=BACIGN_2 organism_group=Unknown_CP rbh
Periplasmic protease; K03797 carboxyl-terminal processing protease [EC:3.4.21.102] rbh
Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
SCNpilot_expt_1000_bf_scaffold_85_17
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

19802..20587
DNA (786bp) protein (262aa)
hypothetical protein id=7718138 bin=BACIGN_2 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=BACIGN_2 organism_group=Unknown_CP rbh
hypothetical protein
Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
SCNpilot_expt_1000_bf_scaffold_85_18
BJP_IG2069_Ignavibacteriae_38_11, Ignavibacteriae, Bacteria

Not on your lists

20584..21492
DNA (909bp) protein (303aa)
hypothetical protein id=7718139 bin=BACIGN_2 species=Brevibacillus laterosporus genus=Brevibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=BACIGN_2 organism_group=Unknown_CP rbh
hypothetical protein
Tax=BJP_IG2069_Ignavibacteriae_38_11
SCNpilot_expt_1000_bf_scaffold_85_19
RBG_16_Ignavibacteria_35_7_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(21547..22479)
DNA (933bp) protein (311aa)
ldcA; Muramoyltetrapeptide carboxypeptidase; K01297 muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13] id=7718140 bin=BACIGN_2 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=BACIGN_2 organism_group=Unknown_CP rbh
ldcA; Muramoyltetrapeptide carboxypeptidase; K01297 muramoyltetrapeptide carboxypeptidase [EC:3.4.17.13]
Tax=RBG_16_Ignavibacteria_35_7_curated
SCNpilot_expt_1000_bf_scaffold_85_20
Sporocytophaga myxococcoides, Sporocytophaga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

22725..25244
DNA (2520bp) protein (840aa)
hypothetical protein id=7718141 bin=BACIGN_2 species=Saprospira grandis genus=Saprospira taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP rbh
Uncharacterized protein {ECO:0000313|EMBL:GAL84338.1}; TaxID=153721 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Sporocytophaga.;" source="Sporocytophaga myxococcoides.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_85_21
Fulvivirga imtechensis, Fulvivirga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(25252..26634)
DNA (1383bp) protein (461aa)
Kynurenine 3-monooxygenase (EC:1.14.13.9); K00486 kynurenine 3-monooxygenase [EC:1.14.13.9] id=7718142 bin=BACIGN_2 species=Fulvivirga imtechensis genus=Fulvivirga taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP rbh
Kynurenine 3-monooxygenase {ECO:0000256|HAMAP-Rule:MF_01971}; EC=1.14.13.9 {ECO:0000256|HAMAP-Rule:MF_01971};; Kynurenine 3-hydroxylase {ECO:0000256|HAMAP-Rule:MF_01971}; TaxID=1237149 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; Fulvivirga.;" source="Fulvivirga imtechensis AK7.;"
Kynurenine 3-monooxygenase (EC:1.14.13.9); K00486 kynurenine 3-monooxygenase [EC:1.14.13.9]
SCNpilot_expt_1000_bf_scaffold_85_22
unknown

Not on your lists

comp(26649..27224)
DNA (576bp) protein (192aa)
id=7718143 bin=BACIGN_2 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=BACIGN_2 organism_group=Unknown_CP rbh
SCNpilot_expt_1000_bf_scaffold_85_23
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

comp(27221..28609)
DNA (1389bp) protein (463aa)
id=7718144 bin=BACIGN_2 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=BACIGN_2 organism_group=Unknown_CP rbh
Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
SCNpilot_expt_1000_bf_scaffold_85_24
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

comp(28606..29253)
DNA (648bp) protein (216aa)
isomerase id=7718145 bin=BACIGN_2 species=Desulfuromonas acetoxidans genus=Desulfuromonas taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=BACIGN_2 organism_group=Unknown_CP rbh
isomerase
Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
SCNpilot_expt_1000_bf_scaffold_85_25
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

comp(29250..31397)
DNA (2148bp) protein (716aa)
mrcA; Penicillin-binding protein 1A; K05366 penicillin-binding protein 1A [EC:2.4.1.- 3.4.-.-] id=7718146 bin=BACIGN_2 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=BACIGN_2 organism_group=Unknown_CP rbh
mrcA; Penicillin-binding protein 1A; K05366 penicillin-binding protein 1A [EC:2.4.1.- 3.4.-.-] rbh
Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
SCNpilot_expt_1000_bf_scaffold_85_26
uncultured Bacteroidetes bacterium, Bacteroidetes, Bacteria

Not on your lists

comp(31407..32861)
DNA (1455bp) protein (485aa)
OmpA/MotB domain-containing protein id=7718147 bin=BACIGN_2 species=uncultured Bacteroidetes bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP rbh
OmpA family peptidoglycan-associated lipoprotein {ECO:0000313|EMBL:BAL55108.1}; TaxID=152509 species="Bacteria; Bacteroidetes; environmental samples.;" source="uncultured Bacteroidetes bacterium.;"
outer membrane protein/peptidoglycan-associated (lipo)protein
SCNpilot_expt_1000_bf_scaffold_85_27
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

comp(33082..33702)
DNA (621bp) protein (207aa)
aat; leucyl/phenylalanyl-tRNA--protein transferase (EC:2.3.2.6); K00684 leucyl/phenylalanyl-tRNA--protein transferase [EC:2.3.2.6] id=7718148 bin=BACIGN_2 species=uncultured Bacteroidetes bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP rbh
aat; leucyl/phenylalanyl-tRNA--protein transferase (EC:2.3.2.6)
Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
SCNpilot_expt_1000_bf_scaffold_85_28
GWF2_RIF_IGX_33_9_curated, RIF-IGX, Bacteria

Not on your lists

comp(33718..34398)
DNA (681bp) protein (227aa)
tRNA (guanine-N(7)-)-methyltransferase (EC:2.1.1.33); K03439 tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33] id=7718149 bin=BACIGN_2 species=Gemmata obscuriglobus genus=Gemmata taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=BACIGN_2 organism_group=Unknown_CP rbh
tRNA (guanine-N(7)-)-methyltransferase (EC:2.1.1.33); K03439 tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
Tax=GWF2_RIF_IGX_33_9_curated
SCNpilot_expt_1000_bf_scaffold_85_29
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

34508..36610
DNA (2103bp) protein (701aa)
secD; preprotein translocase subunit SecD; K03072 preprotein translocase subunit SecD id=7718150 bin=BACIGN_2 species=Chlorobium ferrooxidans genus=Chlorobium taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=BACIGN_2 organism_group=Unknown_CP rbh
secD; preprotein translocase subunit SecD; K03072 preprotein translocase subunit SecD rbh
Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
SCNpilot_expt_1000_bf_scaffold_85_30
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

36623..37567
DNA (945bp) protein (315aa)
protein-export membrane protein SecF; K03074 preprotein translocase subunit SecF id=7718151 bin=BACIGN_2 species=Denitrovibrio acetiphilus genus=Denitrovibrio taxon_order=Deferribacterales taxon_class=Deferribacteres phylum=Deferribacteres tax=BACIGN_2 organism_group=Unknown_CP rbh
protein-export membrane protein SecF; K03074 preprotein translocase subunit SecF
Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
Displaying items 1-30 of 203 in total

View Taxonomy