ggKbase home page

SCNpilot_expt_1000_bf_scaffold_238

Search features with annotation key words

Displaying items 1-30 of 170 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_238_1
unknown

Not on your lists

248..1285
DNA (1038bp) protein (346aa)
id=7718647 bin=BACIGN_2 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=BACIGN_2 organism_group=Unknown_CP rbh
SCNpilot_expt_1000_bf_scaffold_238_2
unknown

Not on your lists

1308..1745
DNA (438bp) protein (146aa)
id=7718646 bin=BACIGN_2 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=BACIGN_2 organism_group=Unknown_CP rbh
SCNpilot_expt_1000_bf_scaffold_238_3
unknown

Not on your lists

1813..2451
DNA (639bp) protein (213aa)
id=7718645 bin=BACIGN_2 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=BACIGN_2 organism_group=Unknown_CP rbh
SCNpilot_expt_1000_bf_scaffold_238_4
unknown

Not on your lists

2550..3056
DNA (507bp) protein (169aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_238_5
unknown

Not on your lists

comp(3012..3539)
DNA (528bp) protein (176aa)
id=7718644 bin=BACIGN_2 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=BACIGN_2 organism_group=Unknown_CP rbh
SCNpilot_expt_1000_bf_scaffold_238_6
Bacteroides sp. HPS0048, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

3975..4562
DNA (588bp) protein (196aa)
prophage antirepressor id=7718643 bin=BACIGN_2 species=unknown genus=Bacteroides taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP rbh
Anti-repressor protein {ECO:0000313|EMBL:EOA57431.1}; TaxID=1078089 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. HPS0048.;"
KilA
SCNpilot_expt_1000_bf_scaffold_238_7
unknown

Not on your lists

comp(4628..4906)
DNA (279bp) protein (93aa)
id=7718642 bin=BACIGN_2 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=BACIGN_2 organism_group=Unknown_CP
SCNpilot_expt_1000_bf_scaffold_238_8
Facklamia ignava, Facklamia, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

5004..5480
DNA (477bp) protein (159aa)
phage related protein id=7718641 bin=BACIGN_2 species=Facklamia ignava genus=Facklamia taxon_order=Lactobacillales taxon_class=Bacilli phylum=Firmicutes tax=BACIGN_2 organism_group=Unknown_CP rbh
Uncharacterized protein {ECO:0000313|EMBL:EKB58929.1}; TaxID=883112 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Aerococcaceae; Facklamia.;" source="Facklamia ignava CCUG 37419.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_238_9
BJP_IG2103_Bacteroidetes_41_9, Bacteroidetes, Bacteria

Not on your lists

comp(9899..10372)
DNA (474bp) protein (158aa)
dps_2; ferritin; K04047 starvation-inducible DNA-binding protein id=7718640 bin=BACIGN_2 species=Idiomarina loihiensis genus=Idiomarina taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=BACIGN_2 organism_group=Unknown_CP rbh
dps_2; ferritin; K04047 starvation-inducible DNA-binding protein
Tax=BJP_IG2103_Bacteroidetes_41_9
SCNpilot_expt_1000_bf_scaffold_238_10
Flavobacteriales bacterium BRH_c54, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(10375..11394)
DNA (1020bp) protein (340aa)
deblocking aminopeptidase id=7718639 bin=BACIGN_2 species=unknown genus=Thermococcus taxon_order=Thermococcales taxon_class=Thermococci phylum=Euryarchaeota tax=BACIGN_2 organism_group=Unknown_CP rbh
Glucanase {ECO:0000313|EMBL:KJS06974.1}; TaxID=1629721 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales.;" source="Flavobacteriales bacterium BRH_c54.;"
deblocking aminopeptidase rbh
SCNpilot_expt_1000_bf_scaffold_238_11
unknown

Not on your lists

comp(11657..12301)
DNA (645bp) protein (215aa)
id=7718637 bin=BACIGN_2 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=BACIGN_2 organism_group=Unknown_CP rbh
SCNpilot_expt_1000_bf_scaffold_238_12
unknown

Not on your lists

12910..13989
DNA (1080bp) protein (360aa)
id=7718636 bin=BACIGN_2 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=BACIGN_2 organism_group=Unknown_CP rbh
SCNpilot_expt_1000_bf_scaffold_238_13
unknown

Not on your lists

14790..15791
DNA (1002bp) protein (334aa)
id=7718635 bin=BACIGN_2 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=BACIGN_2 organism_group=Unknown_CP rbh
SCNpilot_expt_1000_bf_scaffold_238_14
unknown

Not on your lists

15733..16278
DNA (546bp) protein (182aa)
id=7718634 bin=BACIGN_2 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=BACIGN_2 organism_group=Unknown_CP rbh
SCNpilot_expt_1000_bf_scaffold_238_15
unknown

Not on your lists

16275..16772
DNA (498bp) protein (166aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_238_16
unknown

Not on your lists

16775..17794
DNA (1020bp) protein (340aa)
id=7718633 bin=BACIGN_2 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=BACIGN_2 organism_group=Unknown_CP rbh
SCNpilot_expt_1000_bf_scaffold_238_17
unknown

Not on your lists

17812..18252
DNA (441bp) protein (147aa)
id=7718632 bin=BACIGN_2 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=BACIGN_2 organism_group=Unknown_CP rbh
SCNpilot_expt_1000_bf_scaffold_238_18
unknown

Not on your lists

18891..19181
DNA (291bp) protein (97aa)
id=7718631 bin=BACIGN_2 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=BACIGN_2 organism_group=Unknown_CP
SCNpilot_expt_1000_bf_scaffold_238_19
unknown

Not on your lists

19389..19685
DNA (297bp) protein (99aa)
id=7718630 bin=BACIGN_2 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=BACIGN_2 organism_group=Unknown_CP
SCNpilot_expt_1000_bf_scaffold_238_20
unknown

Not on your lists

19687..19866
DNA (180bp) protein (60aa)
id=7718629 bin=BACIGN_2 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=BACIGN_2 organism_group=Unknown_CP
SCNpilot_expt_1000_bf_scaffold_238_21
Pontibacter korlensis, Pontibacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(20172..20501)
DNA (330bp) protein (110aa)
hypothetical protein; K09922 hypothetical protein id=7718628 bin=BACIGN_2 species=Pontibacter sp. BAB1700 genus=Pontibacter taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP
Uncharacterized protein {ECO:0000313|EMBL:AKD05353.1}; TaxID=400092 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Pontibacter.;" source="Pontibacter korlensis.;"
hypothetical protein; K09922 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_238_22
Cellulophaga baltica, Cellulophaga, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(20519..21337)
DNA (819bp) protein (273aa)
hypothetical protein; K08994 putative membrane protein id=7718627 bin=BACIGN_2 species=Cellulophaga algicola genus=Cellulophaga taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP rbh
Membrane protein {ECO:0000313|EMBL:AIZ43355.1}; TaxID=1348584 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Cellulophaga.;" source="Cellulophaga baltica 18.;"
hypothetical protein; K08994 putative membrane protein
SCNpilot_expt_1000_bf_scaffold_238_23
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

comp(21939..23201)
DNA (1263bp) protein (421aa)
serS; seryl-tRNA synthetase; K01875 seryl-tRNA synthetase [EC:6.1.1.11] id=7718626 bin=BACIGN_2 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=BACIGN_2 organism_group=Unknown_CP rbh
serS; seryl-tRNA synthetase; K01875 seryl-tRNA synthetase [EC:6.1.1.11] rbh
Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
SCNpilot_expt_1000_bf_scaffold_238_24
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(23258..24013)
DNA (756bp) protein (252aa)
family 2 glycosyl transferase id=7718625 bin=BACIGN_2 species=Niastella koreensis genus=Niastella taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP rbh
family 2 glycosyl transferase
Glycosyl transferase family 2 {ECO:0000313|EMBL:AEV98269.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_1000_bf_scaffold_238_25
GWA2_Ignavibacteria_54_16_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

24164..26935
DNA (2772bp) protein (924aa)
hypothetical protein id=7718624 bin=BACIGN_2 species=Herpetosiphon aurantiacus genus=Herpetosiphon taxon_order=Herpetosiphonales taxon_class=Chloroflexi phylum=Chloroflexi tax=BACIGN_2 organism_group=Unknown_CP rbh
hypothetical protein
Tax=GWA2_Ignavibacteria_54_16_curated
SCNpilot_expt_1000_bf_scaffold_238_26
uncultured Bacteroidetes bacterium, Bacteroidetes, Bacteria

Not on your lists

comp(26992..28851)
DNA (1860bp) protein (620aa)
gidA; Glucose-inhibited division protein A; K03495 tRNA uridine 5-carboxymethylaminomethyl modification enzyme id=7718623 bin=BACIGN_2 species=uncultured Bacteroidetes bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP rbh
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG {ECO:0000256|HAMAP-Rule:MF_00129}; Glucose-inhibited division protein A {ECO:0000256|HAMAP-Rule:MF_00129}; TaxID=152509 species="Bacteria; Bacteroidetes; environmental samples.;" source="uncultured Bacteroidetes bacterium.;"
glucose-inhibited division protein A rbh
SCNpilot_expt_1000_bf_scaffold_238_27
Paenibacillus sp. FSL R5-192, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(29013..29543)
DNA (531bp) protein (177aa)
hypothetical protein id=7718622 bin=BACIGN_2 species=Paenibacillus curdlanolyticus genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=BACIGN_2 organism_group=Unknown_CP rbh
GNAT family acetyltransferase {ECO:0000313|EMBL:ETT36571.1}; TaxID=1226754 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. FSL R5-192.;"
acyl-CoA N-acyltransferase
SCNpilot_expt_1000_bf_scaffold_238_28
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

comp(29547..30911)
DNA (1365bp) protein (455aa)
trmE; tRNA modification GTPase TrmE; K03650 tRNA modification GTPase [EC:3.6.-.-] id=7718621 bin=BACIGN_2 species=uncultured Bacteroidetes bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP rbh
tRNA modification GTPase TrmE
Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
SCNpilot_expt_1000_bf_scaffold_238_29
GWF2_RIF_IGX_33_9_curated, RIF-IGX, Bacteria

Not on your lists

31028..31765
DNA (738bp) protein (246aa)
biotin--acetyl-CoA-carboxylase ligase; K03524 BirA family transcriptional regulator, biotin operon repressor / biotin-[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15] id=7718620 bin=BACIGN_2 species=Haliangium ochraceum genus=Haliangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=BACIGN_2 organism_group=Unknown_CP rbh
biotin--acetyl-CoA-carboxylase ligase; K03524 BirA family transcriptional regulator, biotin operon repressor / biotin-[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
Tax=GWF2_RIF_IGX_33_9_curated
SCNpilot_expt_1000_bf_scaffold_238_30
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

31737..32570
DNA (834bp) protein (278aa)
transcriptional acitvator, Baf family; K03525 type III pantothenate kinase [EC:2.7.1.33] id=7718619 bin=BACIGN_2 species=Prevotella bergensis genus=Prevotella taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP rbh
transcriptional acitvator, Baf family; K03525 type III pantothenate kinase [EC:2.7.1.33]
Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
Displaying items 1-30 of 170 in total

View Taxonomy