ggKbase home page

SCNpilot_expt_1000_bf_scaffold_412

Search features with annotation key words

Displaying items 1-30 of 52 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_412_1
unknown

Not on your lists

2..85
DNA (84bp) protein (28aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_412_2
Brevibacillus sp. CF112, Brevibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(531..1421)
DNA (891bp) protein (297aa)
hypothetical protein; K07146 UPF0176 protein id=7719004 bin=BACIGN_2 species=unknown genus=Brevibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=BACIGN_2 organism_group=Unknown_CP rbh
UPF0176 protein PMI08_01486 {ECO:0000256|HAMAP-Rule:MF_00469}; TaxID=1144311 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Brevibacillus.;" source="Brevibacillus sp. CF112.;"
hypothetical protein; K07146 UPF0176 protein rbh
SCNpilot_expt_1000_bf_scaffold_412_3
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

1706..4669
DNA (2964bp) protein (988aa)
TPR repeat protein id=7719003 bin=BACIGN_2 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=BACIGN_2 organism_group=Unknown_CP rbh
TPR repeat protein
Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
SCNpilot_expt_1000_bf_scaffold_412_4
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

4666..6300
DNA (1635bp) protein (545aa)
id=7719002 bin=BACIGN_2 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=BACIGN_2 organism_group=Unknown_CP rbh
Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
SCNpilot_expt_1000_bf_scaffold_412_5
BJP_IG2069_Ignavibacteriae_38_11, Ignavibacteriae, Bacteria

Not on your lists

6303..7076
DNA (774bp) protein (258aa)
id=7719001 bin=BACIGN_2 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=BACIGN_2 organism_group=Unknown_CP rbh
Tax=BJP_IG2069_Ignavibacteriae_38_11
SCNpilot_expt_1000_bf_scaffold_412_6
BJP_IG2069_Ignavibacteriae_38_11, Ignavibacteriae, Bacteria

Not on your lists

7076..7837
DNA (762bp) protein (254aa)
id=7719000 bin=BACIGN_2 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=BACIGN_2 organism_group=Unknown_CP rbh
Tax=BJP_IG2069_Ignavibacteriae_38_11
SCNpilot_expt_1000_bf_scaffold_412_7
unknown

Not on your lists

7837..8013
DNA (177bp) protein (59aa)
id=7718999 bin=BACIGN_2 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=BACIGN_2 organism_group=Unknown_CP
SCNpilot_expt_1000_bf_scaffold_412_8
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

8050..9399
DNA (1350bp) protein (450aa)
nucleotide sugar dehydrogenase; K00012 UDPglucose 6-dehydrogenase [EC:1.1.1.22] id=7718998 bin=BACIGN_2 species=Robiginitalea biformata genus=Robiginitalea taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP rbh
nucleotide sugar dehydrogenase; K00012 UDPglucose 6-dehydrogenase [EC:1.1.1.22]
Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
SCNpilot_expt_1000_bf_scaffold_412_9
BJP_IG2069_Spirochaetales_48_31, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(9403..10962)
DNA (1560bp) protein (520aa)
id=7718997 bin=BACIGN_2 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=BACIGN_2 organism_group=Unknown_CP rbh
Tax=BJP_IG2069_Spirochaetales_48_31
SCNpilot_expt_1000_bf_scaffold_412_10
RBG_16_Spirochaetes_49_21_curated, Spirochaetes, Bacteria

Not on your lists

comp(10966..12285)
DNA (1320bp) protein (440aa)
ATPase; K03924 MoxR-like ATPase [EC:3.6.3.-] id=7718996 bin=BACIGN_2 species=Hyperthermus butylicus genus=Hyperthermus taxon_order=Desulfurococcales taxon_class=Thermoprotei phylum=Crenarchaeota tax=BACIGN_2 organism_group=Unknown_CP rbh
ATPase; K03924 MoxR-like ATPase [EC:3.6.3.-]
Tax=RBG_16_Spirochaetes_49_21_curated
SCNpilot_expt_1000_bf_scaffold_412_11
Fibrella aestuarina, Fibrella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(12352..13077)
DNA (726bp) protein (242aa)
methyltransferase small; K15460 tRNA1Val (adenine37-N6)-methyltransferase [EC:2.1.1.223] id=7718995 bin=BACIGN_2 species=Fibrella aestuarina genus=Fibrella taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP rbh
tRNA1(Val) (adenine(37)-N6)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01872, ECO:0000256|SAAS:SAAS00016413}; EC=2.1.1.223 {ECO:0000256|HAMAP-Rule:MF_01872, ECO:0000256|SAAS:SAAS00016405};; tRNA m6A37 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01872}; TaxID=1166018 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrella.;" source="Fibrella aestuarina BUZ 2.;"
methyltransferase small
SCNpilot_expt_1000_bf_scaffold_412_12
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

13153..15009
DNA (1857bp) protein (619aa)
uvrC; excinuclease ABC subunit C; K03703 excinuclease ABC subunit C id=7718994 bin=BACIGN_2 species=Chloroherpeton thalassium genus=Chloroherpeton taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=BACIGN_2 organism_group=Unknown_CP rbh
uvrC; excinuclease ABC subunit C; K03703 excinuclease ABC subunit C rbh
Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
SCNpilot_expt_1000_bf_scaffold_412_13
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

14990..16861
DNA (1872bp) protein (624aa)
alpha amylase id=7718993 bin=BACIGN_2 species=Chloroherpeton thalassium genus=Chloroherpeton taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=BACIGN_2 organism_group=Unknown_CP rbh
alpha amylase rbh
Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
SCNpilot_expt_1000_bf_scaffold_412_14
unknown

Not on your lists

16848..17498
DNA (651bp) protein (217aa)
id=7718992 bin=BACIGN_2 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=BACIGN_2 organism_group=Unknown_CP rbh
SCNpilot_expt_1000_bf_scaffold_412_15
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

comp(17502..21212)
DNA (3711bp) protein (1237aa)
yiaD; outer membrane protein id=7718991 bin=BACIGN_2 species=Cytophaga hutchinsonii genus=Cytophaga taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP rbh
yiaD; outer membrane protein
Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
SCNpilot_expt_1000_bf_scaffold_412_16
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

comp(21332..22492)
DNA (1161bp) protein (387aa)
DNA polymerase III subunit delta'; K02341 DNA polymerase III subunit delta' [EC:2.7.7.7] id=7718990 bin=BACIGN_2 species=uncultured Bacteroidetes bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP rbh
DNA polymerase III subunit delta'; K02341 DNA polymerase III subunit delta' [EC:2.7.7.7]
Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
SCNpilot_expt_1000_bf_scaffold_412_17
BJP_IG2103_ACD39_50_23, ACD39, Bacteria

Not on your lists

comp(22526..24043)
DNA (1518bp) protein (506aa)
hypothetical protein id=7718989 bin=BACIGN_2 species=Chloroherpeton thalassium genus=Chloroherpeton taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=BACIGN_2 organism_group=Unknown_CP rbh
hypothetical protein
Tax=BJP_IG2103_ACD39_50_23
SCNpilot_expt_1000_bf_scaffold_412_18
BJP_IG2069_Ignavibacteriae_38_11, Ignavibacteriae, Bacteria

Not on your lists

24062..24772
DNA (711bp) protein (237aa)
OmpR family response regulator; K07665 two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR id=7718988 bin=BACIGN_2 species=uncultured Bacteroidetes bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP rbh
OmpR family response regulator; K07665 two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR
Tax=BJP_IG2069_Ignavibacteriae_38_11
SCNpilot_expt_1000_bf_scaffold_412_19
BJP_IG2069_Ignavibacteriae_38_11, Ignavibacteriae, Bacteria

Not on your lists

24741..25121
DNA (381bp) protein (127aa)
id=7718987 bin=BACIGN_2 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=BACIGN_2 organism_group=Unknown_CP
Tax=BJP_IG2069_Ignavibacteriae_38_11
SCNpilot_expt_1000_bf_scaffold_412_20
unknown

Not on your lists

25357..25680
DNA (324bp) protein (108aa)
id=7718986 bin=BACIGN_2 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=BACIGN_2 organism_group=Unknown_CP
SCNpilot_expt_1000_bf_scaffold_412_21
unknown

Not on your lists

25753..27012
DNA (1260bp) protein (420aa)
id=7718985 bin=BACIGN_2 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=BACIGN_2 organism_group=Unknown_CP rbh
SCNpilot_expt_1000_bf_scaffold_412_22
unknown

Not on your lists

27009..27449
DNA (441bp) protein (147aa)
id=7718984 bin=BACIGN_2 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=BACIGN_2 organism_group=Unknown_CP
SCNpilot_expt_1000_bf_scaffold_412_23
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists


comp(27579..27758)
DNA (180bp) protein (60aa)
rpmG; 50S ribosomal protein L33; K02913 large subunit ribosomal protein L33 id=7718983 bin=BACIGN_2 species=unknown genus=unknown taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=BACIGN_2 organism_group=Unknown_CP
rpmG; 50S ribosomal protein L33; K02913 large subunit ribosomal protein L33
Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
SCNpilot_expt_1000_bf_scaffold_412_24
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists

comp(27855..30317)
DNA (2463bp) protein (821aa)
lon; ATP-dependent Lon protease; K01338 ATP-dependent Lon protease [EC:3.4.21.53] id=7718982 bin=BACIGN_2 species=Melioribacter roseus genus=Melioribacter taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=BACIGN_2 organism_group=Unknown_CP rbh
ATP-dependent Lon protease rbh
Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
SCNpilot_expt_1000_bf_scaffold_412_25
GWF2_RIF_IGX_33_9_curated, RIF-IGX, Bacteria

Not on your lists

30583..31068
DNA (486bp) protein (162aa)
translation initiation factor IF-3; K02520 translation initiation factor IF-3 id=7718981 bin=BACIGN_2 species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP rbh
translation initiation factor IF-3; K02520 translation initiation factor IF-3
Tax=GWF2_RIF_IGX_33_9_curated
SCNpilot_expt_1000_bf_scaffold_412_26
Prevotella sp. CAG:255, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


31082..31270
DNA (189bp) protein (63aa)
50S ribosomal protein L35; K02916 large subunit ribosomal protein L35 id=7718980 bin=BACIGN_2 species=Chitinophaga pinensis genus=Chitinophaga taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP
50S ribosomal protein L35; K02916 large subunit ribosomal protein L35
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; TaxID=1262923 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; environmental samples.;" source="Prevotella sp. CAG:255.;"
SCNpilot_expt_1000_bf_scaffold_412_27
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists


31371..31718
DNA (348bp) protein (116aa)
50S ribosomal protein L20; K02887 large subunit ribosomal protein L20 id=7718979 bin=BACIGN_2 species=Melioribacter roseus genus=Melioribacter taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=BACIGN_2 organism_group=Unknown_CP
50S ribosomal protein L20
Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
SCNpilot_expt_1000_bf_scaffold_412_28
GWF1_Spirochaetes_51_8_curated, Spirochaetes, Bacteria

Not on your lists

31944..33515
DNA (1572bp) protein (524aa)
ABC transporter id=7718978 bin=BACIGN_2 species=Paenibacillus sp. genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=BACIGN_2 organism_group=Unknown_CP rbh
ABC transporter rbh
Tax=GWF1_Spirochaetes_51_8_curated
SCNpilot_expt_1000_bf_scaffold_412_29
RIFOXYC2_FULL_RIF_IGX_35_21_curated, RIF-IGX, Bacteria

Not on your lists


33564..34583
DNA (1020bp) protein (340aa)
pheS; phenylalanyl-tRNA synthetase subunit alpha; K01889 phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] id=7718977 bin=BACIGN_2 species=Chloroherpeton thalassium genus=Chloroherpeton taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=BACIGN_2 organism_group=Unknown_CP rbh
pheS; phenylalanyl-tRNA synthetase subunit alpha; K01889 phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]
Tax=RIFOXYC2_FULL_RIF_IGX_35_21_curated
SCNpilot_expt_1000_bf_scaffold_412_30
GWA1_Bdellovibrionales_52_35_curated, Bdellovibrionaceae, Bdellovibrionales, Bdellovibrio, Bacteria

Not on your lists

34583..35278
DNA (696bp) protein (232aa)
lipoprotein releasing system ATP-binding protein LolD; K09810 lipoprotein-releasing system ATP-binding protein [EC:3.6.3.-] id=7718976 bin=BACIGN_2 species=Shewanella piezotolerans genus=Shewanella taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=BACIGN_2 organism_group=Unknown_CP rbh
lolD; outer membrane lipoproteins ABC transporter ATP-binding protein; K09810 lipoprotein-releasing system ATP-binding protein [EC:3.6.3.-]
Tax=GWA1_Bdellovibrionales_52_35_curated
Displaying items 1-30 of 52 in total

View Taxonomy