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SCNpilot_expt_1000_bf_scaffold_53

Search features with annotation key words

Displaying items 1-30 of 215 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_53_1
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(178..1107)
DNA (930bp) protein (310aa)
Putative oxidoreductase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQR7_9SPHN
putative oxidoreductase
Putative oxidoreductase {ECO:0000313|EMBL:BAK65939.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_53_2
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1197..1898
DNA (702bp) protein (234aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G4I2_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO55105.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_53_3
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1883..2398)
DNA (516bp) protein (172aa)
Transcriptional regulator, MarR family n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G4I3_NOVAD
Transcriptional regulators {ECO:0000313|EMBL:GAO55106.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
MarR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_53_4
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2620..5007
DNA (2388bp) protein (796aa)
TonB-denpendent receptor n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B5A76F rbh
Uncharacterized protein {ECO:0000313|EMBL:GAO55107.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
TonB-dependent receptor rbh
SCNpilot_expt_1000_bf_scaffold_53_5
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5151..6728
DNA (1578bp) protein (526aa)
FAD linked oxidase-like protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G4B1_NOVAD rbh
FAD linked oxidase-like protein rbh
FAD linked oxidase-like protein {ECO:0000313|EMBL:ABD27312.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_expt_1000_bf_scaffold_53_6
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6725..7144
DNA (420bp) protein (140aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G4B2_NOVAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD27311.1}; Flags: Precursor;; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_expt_1000_bf_scaffold_53_7
unknown

Not on your lists

7144..7527
DNA (384bp) protein (128aa)
twin-arginine translocation pathway signal protein
SCNpilot_expt_1000_bf_scaffold_53_8
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7524..7859)
DNA (336bp) protein (112aa)
hypothetical protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00037D7BBE
Uncharacterized protein {ECO:0000313|EMBL:KEZ18745.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_53_9
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7859..8863)
DNA (1005bp) protein (335aa)
2-nitropropane dioxygenase; K02371 enoyl-[acyl carrier protein] reductase II [EC:1.3.1.-]
Putative 2-nitropropane dioxygenase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YHQ5_9SPHN
Putative 2-nitropropane dioxygenase {ECO:0000313|EMBL:GAD47467.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
SCNpilot_expt_1000_bf_scaffold_53_10
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9059..11245
DNA (2187bp) protein (729aa)
Catalase-peroxidase {ECO:0000256|HAMAP-Rule:MF_01961, ECO:0000256|RuleBase:RU003451}; Short=CP {ECO:0000256|HAMAP-Rule:MF_01961};; EC=1.11.1.21 {ECO:0000256|HAMAP-Rule:MF_01961, ECO:0000256|RuleBase:RU003451};; Peroxidase/catalase {ECO:0000256|HAMAP-Rule:MF_01961}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
katG; catalase/peroxidase (EC:1.11.1.21)
Catalase-peroxidase n=2 Tax=Novosphingobium nitrogenifigens RepID=F1Z522_9SPHN rbh
SCNpilot_expt_1000_bf_scaffold_53_11
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11450..12226
DNA (777bp) protein (259aa)
hypothetical protein n=1 Tax=Blastomonas sp. AAP53 RepID=UPI0002F18BD8 rbh
Uncharacterized protein {ECO:0000313|EMBL:GAO39284.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
hypothetical protein; K07090
SCNpilot_expt_1000_bf_scaffold_53_12
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12297..13130)
DNA (834bp) protein (278aa)
Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01974}; Short=MAP {ECO:0000256|HAMAP-Rule:MF_01974};; Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01974};; EC=3.4.11.18 {ECO:0000256|HAMAP-Rule:MF_01974};; Peptidase M {ECO:0000256|HAMAP-Rule:MF_01974}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
methionine aminopeptidase, type I (EC:3.4.11.18); K01265 methionyl aminopeptidase [EC:3.4.11.18]
methionine aminopeptidase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B4A48E
SCNpilot_expt_1000_bf_scaffold_53_13
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13197..14024)
DNA (828bp) protein (276aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9B7_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:GAO57003.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_53_14
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14135..15553
DNA (1419bp) protein (473aa)
Peptidase B {ECO:0000313|EMBL:GAO57002.1}; EC=3.4.11.23 {ECO:0000313|EMBL:GAO57002.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
leucyl aminopeptidase (EC:3.4.11.1); K01255 leucyl aminopeptidase [EC:3.4.11.1] rbh
Leucyl aminopeptidase n=1 Tax=Novosphingobium sp. PP1Y RepID=F6II83_9SPHN rbh
SCNpilot_expt_1000_bf_scaffold_53_15
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15634..15966
DNA (333bp) protein (111aa)
hypothetical protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B647D1
Uncharacterized protein {ECO:0000313|EMBL:GAD49459.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_53_16
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15963..16889
DNA (927bp) protein (309aa)
N-acetyl-gamma-glutamyl-phosphate reductase {ECO:0000256|HAMAP-Rule:MF_01110, ECO:0000256|SAAS:SAAS00015955}; Short=AGPR {ECO:0000256|HAMAP-Rule:MF_01110};; EC=1.2.1.38 {ECO:0000256|HAMAP-Rule:MF_01110, ECO:0000256|SAAS:SAAS00015955};; N-acetyl-glutamate semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01110}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
N-acetyl-gamma-glutamyl-phosphate reductase (EC:1.2.1.38); K00145 N-acetyl-gamma-glutamyl-phosphate reductase [EC:1.2.1.38]
N-acetyl-gamma-glutamyl-phosphate reductase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A3X5_9SPHN
SCNpilot_expt_1000_bf_scaffold_53_17
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17230..17568
DNA (339bp) protein (113aa)
nitrogen regulatory protein P-II 1 n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B6CDC7
Nitrogen regulatory protein P-II 1 {ECO:0000313|EMBL:KHA65474.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
nitrogen regulatory protein P-II 1; K04751 nitrogen regulatory protein P-II 1
SCNpilot_expt_1000_bf_scaffold_53_18
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17709..19118
DNA (1410bp) protein (470aa)
Glutamine synthetase type I {ECO:0000313|EMBL:GAO57006.1}; EC=6.3.1.2 {ECO:0000313|EMBL:GAO57006.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
L-glutamine synthetase (EC:6.3.1.2); K01915 glutamine synthetase [EC:6.3.1.2]
glutamine synthetase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B43AE2
SCNpilot_expt_1000_bf_scaffold_53_19
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19453..23673)
DNA (4221bp) protein (1407aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9C5_NOVAD
hypothetical protein; K09800 hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD25548.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_expt_1000_bf_scaffold_53_20
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23673..26003)
DNA (2331bp) protein (777aa)
Surface antigen (D15) n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9C6_NOVAD
surface antigen (D15)
Surface antigen (D15) {ECO:0000313|EMBL:ABD25547.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCNpilot_expt_1000_bf_scaffold_53_21
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25954..26865)
DNA (912bp) protein (304aa)
arginyl-tRNA-protein transferase (EC:2.3.2.8); K00685 arginine-tRNA-protein transferase [EC:2.3.2.8]
Putative arginyl-tRNA--protein transferase n=1 Tax=Novosphingobium sp. AP12 RepID=J3A0V6_9SPHN rbh
Arginyl-tRNA-protein transferase {ECO:0000313|EMBL:AKH42419.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
SCNpilot_expt_1000_bf_scaffold_53_22
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27079..28329)
DNA (1251bp) protein (417aa)
threonine dehydratase (EC:4.3.1.19); K01754 threonine dehydratase [EC:4.3.1.19]
Threonine dehydratase n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZD85_9SPHN rbh
Threonine dehydratase {ECO:0000313|EMBL:EGD57319.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
SCNpilot_expt_1000_bf_scaffold_53_23
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28521..29375
DNA (855bp) protein (285aa)
3-hydroxyisobutyrate dehydrogenase (EC:1.1.1.31)
3-hydroxyisobutyrate dehydrogenase {ECO:0000313|EMBL:CCA91514.1}; EC=1.1.1.31 {ECO:0000313|EMBL:CCA91514.1};; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
3-hydroxyisobutyrate dehydrogenase n=2 Tax=Novosphingobium RepID=F6II72_9SPHN
SCNpilot_expt_1000_bf_scaffold_53_24
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29372..31072
DNA (1701bp) protein (567aa)
Amidohydrolase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9D1_NOVAD rbh
Uncharacterized protein {ECO:0000313|EMBL:GAO53831.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
amidohydrolase; K07047 rbh
SCNpilot_expt_1000_bf_scaffold_53_25
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31306..32097)
DNA (792bp) protein (264aa)
Sec-independent protein translocase protein TatC n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YLZ2_9SPHN
Sec-independent protein translocase protein TatC {ECO:0000256|HAMAP-Rule:MF_00902}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
sec-independent protein translocase protein TatC; K03118 sec-independent protein translocase protein TatC
SCNpilot_expt_1000_bf_scaffold_53_26
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32101..32550)
DNA (450bp) protein (150aa)
Sec-independent protein translocase protein TatB n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0IVE3_9SPHN
Sec-independent protein translocase protein TatB {ECO:0000256|HAMAP-Rule:MF_00237, ECO:0000256|SAAS:SAAS00028234}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
sec-independent protein translocase protein TatB; K03117 sec-independent protein translocase protein TatB
SCNpilot_expt_1000_bf_scaffold_53_27
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32592..32837)
DNA (246bp) protein (82aa)
Sec-independent protein translocase protein TatA n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6ECX2_9SPHN
sec-independent protein translocase protein TatA; K03116 sec-independent protein translocase protein TatA
Sec-independent protein translocase protein TatA {ECO:0000256|HAMAP-Rule:MF_00236}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium pentaromativorans US6-1.;"
SCNpilot_expt_1000_bf_scaffold_53_28
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32939..33532)
DNA (594bp) protein (198aa)
Condensin subunit ScpB n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZD93_9SPHN
Segregation and condensation protein B {ECO:0000256|SAAS:SAAS00086417}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
hypothetical protein; K06024 segregation and condensation protein B
SCNpilot_expt_1000_bf_scaffold_53_29
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33529..34323)
DNA (795bp) protein (265aa)
Segregation and condensation protein A n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9WL36_9SPHN
Segregation and condensation protein A {ECO:0000313|EMBL:AKH42428.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
segregation and condensation protein A; K05896 segregation and condensation protein A
SCNpilot_expt_1000_bf_scaffold_53_30
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34320..35336)
DNA (1017bp) protein (339aa)
Beta-N-acetylhexosaminidase {ECO:0000256|SAAS:SAAS00114579}; EC=3.2.1.52 {ECO:0000256|SAAS:SAAS00114579};; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
beta-N-acetylhexosaminidase (EC:3.2.1.52); K01207 beta-N-acetylhexosaminidase [EC:3.2.1.52]
Beta-N-acetylhexosaminidase n=1 Tax=Sphingomonas sp. LH128 RepID=J8VKT7_9SPHN
Displaying items 1-30 of 215 in total

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