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SCNpilot_expt_1000_bf_scaffold_337

Search features with annotation key words

Displaying items 1-30 of 87 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_337_1
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

125..829
DNA (705bp) protein (235aa)
Type-F conjugative transfer system pilin assembly protein TrbC n=1 Tax=Novosphingobium sp. AP12 RepID=J3AAG8_9SPHN
Type-F conjugative transfer system pilin assembly protein TrbC {ECO:0000313|EMBL:EJL28349.1}; Flags: Precursor;; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
type-F conjugative transfer system pilin assembly protein TrbC
SCNpilot_expt_1000_bf_scaffold_337_2
Sphingopyxis fribergensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

826..3948
DNA (3123bp) protein (1041aa)
conjugal transfer protein TraN n=1 Tax=Novosphingobium nitrogenifigens RepID=UPI000368921F rbh
Uncharacterized protein {ECO:0000313|EMBL:AJA11615.1}; TaxID=1515612 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis fribergensis.;"
conjugal transfer mating pair stabilization protein TraN; K12058 conjugal transfer mating pair stabilization protein TraN
SCNpilot_expt_1000_bf_scaffold_337_3
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3953..4825
DNA (873bp) protein (291aa)
TraF-like protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z4J3_9SPHN
TraF-like protein {ECO:0000313|EMBL:EGD60463.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
TraF-like protein
SCNpilot_expt_1000_bf_scaffold_337_4
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4825..6330
DNA (1506bp) protein (502aa)
Pilus assembly and synthesis protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z8U2_9SPHN
Pilus assembly and synthesis protein {ECO:0000313|EMBL:EGD59315.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
TraH family protein; K12072 conjugative transfer pilus assembly protein TraH
SCNpilot_expt_1000_bf_scaffold_337_5
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6345..9038
DNA (2694bp) protein (898aa)
TraG domain-containing protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z8U1_9SPHN
TraG domain-containing protein {ECO:0000313|EMBL:EGD59316.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
TraG domain-containing protein
SCNpilot_expt_1000_bf_scaffold_337_6
unknown

Not on your lists

comp(9060..9287)
DNA (228bp) protein (76aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_337_7
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9762..11009)
DNA (1248bp) protein (416aa)
Reverse transcriptase n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S350_9SPHN rbh
Reverse transcriptase rbh
Reverse transcriptase {ECO:0000313|EMBL:AGH50196.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCNpilot_expt_1000_bf_scaffold_337_8
unknown

Not on your lists

11177..11548
DNA (372bp) protein (124aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_337_9
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11493..12158)
DNA (666bp) protein (222aa)
hypothetical protein n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B429B0
Uncharacterized protein {ECO:0000313|EMBL:AIB13200.1}; TaxID=192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_337_10
Tanticharoenia sakaeratensis, Tanticharoenia, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12142..12747)
DNA (606bp) protein (202aa)
7-cyano-7-deazaguanine synthase {ECO:0000256|SAAS:SAAS00029421}; EC=6.3.4.20 {ECO:0000256|SAAS:SAAS00029421};; TaxID=1231623 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Tanticharoenia.;" source="Tanticharoenia sakaeratensis NBRC 103193.;"
ExsB family protein n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B51C80
hypothetical protein; K06920 queuosine biosynthesis protein QueC
SCNpilot_expt_1000_bf_scaffold_337_11
Tanticharoenia sakaeratensis, Tanticharoenia, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12732..13922)
DNA (1191bp) protein (397aa)
nucleoside 2-deoxyribosyltransferase n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B3A805 rbh
Uncharacterized protein {ECO:0000313|EMBL:GAN54417.1}; TaxID=1231623 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Tanticharoenia.;" source="Tanticharoenia sakaeratensis NBRC 103193.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_337_12
Tanticharoenia sakaeratensis, Tanticharoenia, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13919..14230)
DNA (312bp) protein (104aa)
hypothetical protein n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B51BF2
Uncharacterized protein {ECO:0000313|EMBL:GAN54418.1}; TaxID=1231623 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Tanticharoenia.;" source="Tanticharoenia sakaeratensis NBRC 103193.;"
SCNpilot_expt_1000_bf_scaffold_337_13
Tanticharoenia sakaeratensis, Tanticharoenia, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14341..15174)
DNA (834bp) protein (278aa)
Thermostable 8-oxoguanine DNA glycosylase n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B4012B rbh
Uncharacterized protein {ECO:0000313|EMBL:GAN54419.1}; TaxID=1231623 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Tanticharoenia.;" source="Tanticharoenia sakaeratensis NBRC 103193.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_337_14
unknown

Not on your lists

15209..15517
DNA (309bp) protein (103aa)
hypothetical protein n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B359F0
SCNpilot_expt_1000_bf_scaffold_337_15
Halomonas sp. HAL1, Halomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15671..16582)
DNA (912bp) protein (304aa)
Putative uncharacterized protein n=1 Tax=Halomonas sp. HAL1 RepID=G4FAL1_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EHA14152.1}; TaxID=550984 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Halomonas.;" source="Halomonas sp. HAL1.;"
SCNpilot_expt_1000_bf_scaffold_337_16
RIFOXYD12_FULL_Deltaproteobacteria_57_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16848..17339)
DNA (492bp) protein (164aa)
hypothetical protein n=1 Tax=Agrobacterium sp. 10MFCol1.1 RepID=UPI000360FF1F
GCN5-like N-acetyltransferase
Tax=RIFOXYD12_FULL_Deltaproteobacteria_57_12_curated
SCNpilot_expt_1000_bf_scaffold_337_17
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17336..17629)
DNA (294bp) protein (98aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0GBR9_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQA97477.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_337_18
Pseudomonas taiwanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18042..18812
DNA (771bp) protein (257aa)
Uncharacterized protein n=1 Tax=Pseudomonas taiwanensis SJ9 RepID=V7D9M2_9PSED
Uncharacterized protein {ECO:0000313|EMBL:ESW38378.1}; TaxID=1388762 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas taiwanensis SJ9.;"
SCNpilot_expt_1000_bf_scaffold_337_19
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18908..20344
DNA (1437bp) protein (479aa)
hypothetical protein n=1 Tax=Sphingomonas elodea RepID=UPI0002632237 rbh
Uncharacterized protein {ECO:0000313|EMBL:EIZ79382.1}; Flags: Fragment;; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_337_20
Kirrobacter mercurialis, Kirrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20525..23488)
DNA (2964bp) protein (988aa)
Conjugative relaxase domain protein, TrwC/TraI family n=1 Tax=Novosphingobium sp. AP12 RepID=J2ZTZ6_9SPHN rbh
ATPase AAA {ECO:0000313|EMBL:KHL24295.1}; TaxID=1572751 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Kirrobacter.;" source="Kirrobacter mercurialis.;"
conjugative relaxase region-like protein rbh
SCNpilot_expt_1000_bf_scaffold_337_21
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23493..25961)
DNA (2469bp) protein (823aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z4M1_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:EGD60432.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_337_22
unknown

Not on your lists

comp(25945..26244)
DNA (300bp) protein (100aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_337_23
unknown

Not on your lists

comp(27122..27268)
DNA (147bp) protein (49aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_337_24
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27381..28994)
DNA (1614bp) protein (538aa)
agropinic acid lactamase; K01474 N-methylhydantoinase B [EC:3.5.2.14]
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI0002EBF912
Methylhydantoinase {ECO:0000313|EMBL:KJB95675.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
SCNpilot_expt_1000_bf_scaffold_337_25
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28991..31045)
DNA (2055bp) protein (685aa)
agaF; AgaF protein; K01473 N-methylhydantoinase A [EC:3.5.2.14]
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI000364EBCD
Methylhydantoinase {ECO:0000313|EMBL:EWY41005.1}; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
SCNpilot_expt_1000_bf_scaffold_337_26
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31067..31912)
DNA (846bp) protein (282aa)
Ketodeoxygluconokinase {ECO:0000313|EMBL:KFC70945.1}; EC=2.7.1.45 {ECO:0000313|EMBL:KFC70945.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
fructoselysine kinase; K10710 fructoselysine 6-kinase [EC:2.7.1.-]
hypothetical protein n=1 Tax=Rhizobium leguminosarum RepID=UPI00037A223D
SCNpilot_expt_1000_bf_scaffold_337_27
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31937..32950)
DNA (1014bp) protein (338aa)
Glutamine--fructose-6-phosphate aminotransferase {ECO:0000313|EMBL:KFC70946.1}; EC=2.6.1.16 {ECO:0000313|EMBL:KFC70946.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein n=1 Tax=Rhizobium leguminosarum RepID=UPI000369DD3D
sugar isomerase
SCNpilot_expt_1000_bf_scaffold_337_28
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33115..33948
DNA (834bp) protein (278aa)
Transcriptional regulator n=1 Tax=Rhizobium sp. CF080 RepID=J2JSM0_9RHIZ
GntR family transcriptional regulator {ECO:0000313|EMBL:KFC70947.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
GntR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_337_29
Gluconacetobacter sp. SXCC-1, Gluconacetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34167..36563
DNA (2397bp) protein (799aa)
TonB-dependent receptor n=1 Tax=Gluconacetobacter sp. SXCC-1 RepID=F3S9W5_9PROT rbh
TonB-dependent receptor {ECO:0000313|EMBL:EGG76594.1}; TaxID=1004836 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconacetobacter.;" source="Gluconacetobacter sp. SXCC-1.;"
TonB-dependent receptor rbh
SCNpilot_expt_1000_bf_scaffold_337_30
unknown

Not on your lists

36818..37099
DNA (282bp) protein (94aa)

This feature has no annotations

Displaying items 1-30 of 87 in total

View Taxonomy