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SCNpilot_expt_1000_bf_scaffold_22

Search features with annotation key words

Displaying items 1-30 of 492 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_22_1
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

302..952
DNA (651bp) protein (217aa)
Transaldolase {ECO:0000256|SAAS:SAAS00118670}; EC=2.2.1.2 {ECO:0000256|SAAS:SAAS00118670};; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
translaldolase; K00616 transaldolase [EC:2.2.1.2]
transaldolase n=1 Tax=Niabella aurantiaca RepID=UPI00036F4F23
SCNpilot_expt_1000_bf_scaffold_22_2
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(1202..2521)
DNA (1320bp) protein (440aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T6T0_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEV97933.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_1000_bf_scaffold_22_3
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

2582..3817
DNA (1236bp) protein (412aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00035EE5D0 rbh
Uncharacterized protein {ECO:0000313|EMBL:AHF16586.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein; K09808 lipoprotein-releasing system permease protein
SCNpilot_expt_1000_bf_scaffold_22_4
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(3814..4545)
DNA (732bp) protein (244aa)
tRNA/rRNA methyltransferase (SpoU) n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TEF5_NIAKG
tRNA/rRNA methyltransferase SpoU; K03437 RNA methyltransferase, TrmH family
tRNA/rRNA methyltransferase (SpoU) {ECO:0000313|EMBL:AEV98365.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_1000_bf_scaffold_22_5
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

4565..6898
DNA (2334bp) protein (778aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI0003704B5F
Uncharacterized protein {ECO:0000313|EMBL:AHF17984.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
surface antigen (D15) rbh
SCNpilot_expt_1000_bf_scaffold_22_6
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(6880..7593)
DNA (714bp) protein (238aa)
tRNA pseudouridine synthase B; K03177 tRNA pseudouridine55 synthase [EC:5.4.99.25]
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
tRNA pseudouridine synthase B n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TEF3_NIAKG
SCNpilot_expt_1000_bf_scaffold_22_7
Arcticibacter svalbardensis, Arcticibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(7619..8941)
DNA (1323bp) protein (441aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00037F0255
Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage {ECO:0000313|EMBL:EOR95437.1}; TaxID=1150600 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Arcticibacter.;" source="Arcticibacter svalbardensis MN12-7.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_22_8
Arcticibacter svalbardensis, Arcticibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(9063..10082)
DNA (1020bp) protein (340aa)
ATPase AAA; K03924 MoxR-like ATPase [EC:3.6.3.-]
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI000372F450
Magnesium chelatase subunit I {ECO:0000313|EMBL:EOR95436.1}; TaxID=1150600 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Arcticibacter.;" source="Arcticibacter svalbardensis MN12-7.;"
SCNpilot_expt_1000_bf_scaffold_22_9
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(10106..11353)
DNA (1248bp) protein (416aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00036224E9
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEV98360.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_1000_bf_scaffold_22_10
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(11357..12229)
DNA (873bp) protein (291aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00035DAD25
Uncharacterized protein {ECO:0000313|EMBL:AKD53590.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_22_11
Pedobacter sp. BAL39, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(12230..13192)
DNA (963bp) protein (321aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00037BD9DA
Putative transmembrane protein {ECO:0000313|EMBL:EDM37455.1}; TaxID=391596 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. BAL39.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_22_12
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

13409..14218
DNA (810bp) protein (270aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI000375F83F
RDD domain-containing protein
RDD domain containing protein {ECO:0000313|EMBL:AEV98357.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_1000_bf_scaffold_22_13
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(14224..14667)
DNA (444bp) protein (148aa)
Uncharacterized protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NV63_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:AHF17715.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
SCNpilot_expt_1000_bf_scaffold_22_14
unknown

Not on your lists

comp(14677..15114)
DNA (438bp) protein (146aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_22_15
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists


comp(15213..16691)
DNA (1479bp) protein (493aa)
prolyl-tRNA synthetase; K01881 prolyl-tRNA synthetase [EC:6.1.1.15]
Proline--tRNA ligase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TEE4_NIAKG
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCNpilot_expt_1000_bf_scaffold_22_16
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

16930..17715
DNA (786bp) protein (262aa)
Uncharacterized protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NRC8_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:KIC93440.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
uncharacterized LOC100515381
SCNpilot_expt_1000_bf_scaffold_22_17
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

17849..19420
DNA (1572bp) protein (524aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00036EC8FB
Uncharacterized protein {ECO:0000313|EMBL:KIC91482.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
aromatic hydrocarbon degradation membrane protein
SCNpilot_expt_1000_bf_scaffold_22_18
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(19427..20329)
DNA (903bp) protein (301aa)
tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783}; EC=2.5.1.75 {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783};; Dimethylallyl diphosphate:tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; Isopentenyl-diphosphate:tRNA isopentenyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;
tRNA dimethylallyltransferase; K00791 tRNA dimethylallyltransferase [EC:2.5.1.75]
tRNA dimethylallyltransferase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TED5_NIAKG
SCNpilot_expt_1000_bf_scaffold_22_19
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(20384..20947)
DNA (564bp) protein (188aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000381B3EF
Uncharacterized protein {ECO:0000313|EMBL:GAO43451.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_22_20
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

21011..22489
DNA (1479bp) protein (493aa)
tRNA nucleotidyltransferase n=1 Tax=Niabella aurantiaca RepID=UPI0003817AD8
tRNA nucleotidyltransferase {ECO:0000313|EMBL:AHF15772.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
polynucleotide adenylyltransferase/metal dependent phosphohydrolase
SCNpilot_expt_1000_bf_scaffold_22_21
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

22596..23171
DNA (576bp) protein (192aa)
Sua5/YciO/YrdC/YwlC family protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NUV1_9SPHI
Translation factor Sua5 {ECO:0000313|EMBL:AHF15771.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
translation factor SUA5; K07566 tRNA threonylcarbamoyladenosine biosynthesis protein
SCNpilot_expt_1000_bf_scaffold_22_22
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(23367..24569)
DNA (1203bp) protein (401aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00037F69CC
Glycosyl transferase family 1 {ECO:0000313|EMBL:AHF15770.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
group 1 glycosyl transferase
SCNpilot_expt_1000_bf_scaffold_22_23
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

24615..25421
DNA (807bp) protein (269aa)
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; K00674 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase [EC:2.3.1.117] rbh
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase {ECO:0000313|EMBL:AEV98338.1}; EC=2.3.1.117 {ECO:0000313|EMBL:AEV98338.1};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TEC8_NIAKG rbh
SCNpilot_expt_1000_bf_scaffold_22_24
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(25619..28873)
DNA (3255bp) protein (1085aa)
Fibronectin type III domain protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TNC6_NIAKG rbh
fibronectin type III domain-containing protein rbh
Fibronectin type III domain protein {ECO:0000313|EMBL:AEV98828.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_1000_bf_scaffold_22_25
Sphingobacterium sp. 21, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(29411..30370)
DNA (960bp) protein (320aa)
Helix-turn-helix, AraC domain n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4C4L2_SPHS2
AraC family transcriptional regulator
Helix-turn-helix, AraC domain {ECO:0000313|EMBL:ADZ81006.1}; TaxID=743722 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. (strain 21).;"
SCNpilot_expt_1000_bf_scaffold_22_26
Sphingobacterium sp. 21, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

30441..31079
DNA (639bp) protein (213aa)
chloramphenicol acetyltransferase; K00638 chloramphenicol O-acetyltransferase [EC:2.3.1.28]
Chloramphenicol acetyltransferase n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4C4L1_SPHS2
Chloramphenicol acetyltransferase {ECO:0000313|EMBL:ADZ81005.1}; TaxID=743722 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. (strain 21).;"
SCNpilot_expt_1000_bf_scaffold_22_27
unknown

Not on your lists

comp(31472..31933)
DNA (462bp) protein (154aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_22_28
Flavobacterium reichenbachii, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(32066..32821)
DNA (756bp) protein (252aa)
Uncharacterized protein n=1 Tax=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) RepID=A5FNL1_FLAJ1 rbh
DNA metabolism protein {ECO:0000313|EMBL:KFF02690.1}; TaxID=362418 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium reichenbachii.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_22_29
Flavobacterium sp. MEB061, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(32825..34087)
DNA (1263bp) protein (421aa)
Radical SAM domain-containing protein n=1 Tax=Flavobacterium sp. F52 RepID=J1ADZ6_9FLAO rbh
Contig_77, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ14000.1}; TaxID=1587524 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. MEB061.;"
radical SAM domain-containing protein rbh
SCNpilot_expt_1000_bf_scaffold_22_30
Sphingobacterium sp. ACCC 05744, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

34238..34957
DNA (720bp) protein (240aa)
fabG; 3-ketoacyl-ACP reductase (EC:1.1.1.100); K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
Oxidoreductase, short chain dehydrogenase/reductase family protein n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=D7W125_9FLAO
3-ketoacyl-(Acyl-carrier-protein) reductase {ECO:0000313|EMBL:KGE15076.1}; TaxID=1229276 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. ACCC 05744.;"
Displaying items 1-30 of 492 in total

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