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SCNpilot_expt_1000_bf_scaffold_106

Search features with annotation key words

Displaying items 1-30 of 137 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_106_1
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(103..843)
DNA (741bp) protein (247aa)
Beta-lactamase domain protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TMS8_NIAKG
Beta-lactamase {ECO:0000313|EMBL:KIC94558.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
beta-lactamase
SCNpilot_expt_1000_bf_scaffold_106_2
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(862..2202)
DNA (1341bp) protein (447aa)
cell cycle protein n=1 Tax=Niabella aurantiaca RepID=UPI0003701662
Cell cycle protein {ECO:0000313|EMBL:AHF15714.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
cell cycle protein; K05837 rod shape determining protein RodA
SCNpilot_expt_1000_bf_scaffold_106_3
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(2199..4304)
DNA (2106bp) protein (702aa)
peptidoglycan glycosyltransferase n=1 Tax=Niabella aurantiaca RepID=UPI00035DB774 rbh
Peptidoglycan glycosyltransferase {ECO:0000313|EMBL:AHF15715.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
peptidoglycan glycosyltransferase; K05515 penicillin-binding protein 2
SCNpilot_expt_1000_bf_scaffold_106_4
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(4432..4968)
DNA (537bp) protein (179aa)
Rod shape-determining protein MreD n=1 Tax=Niabella soli DSM 19437 RepID=H1NUF1_9SPHI
Rod shape-determining protein MreD {ECO:0000313|EMBL:AHF15716.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
rod shape-determining protein MreD
SCNpilot_expt_1000_bf_scaffold_106_5
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(4965..5840)
DNA (876bp) protein (292aa)
Rod shape-determining protein MreC n=1 Tax=Niabella soli DSM 19437 RepID=H1NUF2_9SPHI rbh
Uncharacterized protein {ECO:0000313|EMBL:AHF17684.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
rod shape-determining protein MreC; K03570 rod shape-determining protein MreC
SCNpilot_expt_1000_bf_scaffold_106_6
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(5928..6953)
DNA (1026bp) protein (342aa)
Cell shape determining protein, MreB/Mrl family n=1 Tax=Niabella soli DSM 19437 RepID=H1NUF3_9SPHI rbh
Cell shape-determining protein MreB {ECO:0000313|EMBL:AHF15717.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
MreB/Mrl family cell shape determining protein; K03569 rod shape-determining protein MreB and related proteins
SCNpilot_expt_1000_bf_scaffold_106_7
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(7321..8430)
DNA (1110bp) protein (370aa)
Tryptophan 2,3-dioxygenase {ECO:0000256|HAMAP-Rule:MF_01972}; Short=TDO {ECO:0000256|HAMAP-Rule:MF_01972};; EC=1.13.11.11 {ECO:0000256|HAMAP-Rule:MF_01972};; Tryptamin 2,3-dioxygenase {ECO:0000256|HAMAP-Rule:MF_01972}; Tryptophan oxygenase {ECO:0000256|HAMAP-Rule:MF_01972}; Tryptophan pyrrolase {ECO:0000256|HAMAP-Rule:MF_01972}; Tryptophanase {ECO:0000256|HAMAP-Rule:MF_01972}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="F
tryptophan 23-dioxygenase; K00453 tryptophan 2,3-dioxygenase [EC:1.13.11.11]
hypothetical protein n=1 Tax=Vitreoscilla stercoraria RepID=UPI000365ED94
SCNpilot_expt_1000_bf_scaffold_106_8
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(8463..9773)
DNA (1311bp) protein (437aa)
phosphoribosylamine--glycine ligase; K01945 phosphoribosylamine--glycine ligase [EC:6.3.4.13]
Phosphoribosylamine--glycine ligase {ECO:0000256|HAMAP-Rule:MF_00138}; EC=6.3.4.13 {ECO:0000256|HAMAP-Rule:MF_00138};; GARS {ECO:0000256|HAMAP-Rule:MF_00138}; Glycinamide ribonucleotide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; Phosphoribosylglycinamide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
phosphoribosylamine--glycine ligase n=1 Tax=Niabella aurantiaca RepID=UPI000368110D rbh
SCNpilot_expt_1000_bf_scaffold_106_9
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

9926..11584
DNA (1659bp) protein (553aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00036CAEE8 rbh
amino acid/peptide transporter; K03305 proton-dependent oligopeptide transporter, POT family rbh
Amino acid/peptide transporter {ECO:0000313|EMBL:ACU57697.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_expt_1000_bf_scaffold_106_10
Solitalea canadensis, Solitalea, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

11689..13329
DNA (1641bp) protein (547aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00037F513F
amino acid/peptide transporter (peptide:H symporter)
Amino acid/peptide transporter (Peptide:H symporter) {ECO:0000313|EMBL:AFD06526.1}; TaxID=929556 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Solitalea.;" source="Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 /; NCIMB 12057 / USAM 9D) (Flexibacter canadensis).;"
SCNpilot_expt_1000_bf_scaffold_106_11
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

13450..15507
DNA (2058bp) protein (686aa)
Oligopeptide transporter, OPT family n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PD75_CHIPD
oligopeptide transporter
Oligopeptide transporter, OPT family {ECO:0000313|EMBL:ACU57698.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_expt_1000_bf_scaffold_106_12
Pedobacter sp. V48, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

15742..16185
DNA (444bp) protein (148aa)
Uncharacterized protein {ECO:0000313|EMBL:ETZ21899.1}; TaxID=509635 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. V48.;"
SCNpilot_expt_1000_bf_scaffold_106_13
unknown

Not on your lists

16207..16710
DNA (504bp) protein (168aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_106_14
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(17108..18307)
DNA (1200bp) protein (400aa)
twin-arginine translocation pathway signal n=1 Tax=Niabella aurantiaca RepID=UPI00036B586D
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AEW01986.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_1000_bf_scaffold_106_15
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(18336..19787)
DNA (1452bp) protein (484aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI0003821247
Uncharacterized protein {ECO:0000313|EMBL:AHF16409.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_106_16
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(19897..20208)
DNA (312bp) protein (104aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI0003731CFE
Cytochrome C {ECO:0000313|EMBL:AHF16554.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
SCNpilot_expt_1000_bf_scaffold_106_17
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(20284..20628)
DNA (345bp) protein (115aa)
Uncharacterized protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NRF6_9SPHI
Cytochrome C {ECO:0000313|EMBL:AHF16554.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
SCNpilot_expt_1000_bf_scaffold_106_18
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(20811..22082)
DNA (1272bp) protein (424aa)
seryl-tRNA synthetase; K01875 seryl-tRNA synthetase [EC:6.1.1.11]
Seryl-tRNA synthetase {ECO:0000313|EMBL:AEW01983.1}; EC=6.1.1.11 {ECO:0000313|EMBL:AEW01983.1};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Seryl-tRNA synthetase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TMJ5_NIAKG
SCNpilot_expt_1000_bf_scaffold_106_19
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

22246..22509
DNA (264bp) protein (88aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00035ED83B
Uncharacterized protein {ECO:0000313|EMBL:KIC96093.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_106_20
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

22702..23409
DNA (708bp) protein (236aa)
cyclophilin type peptidyl-prolyl cis-trans isomerase; K03768 peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]
Peptidyl-prolyl cis-trans isomerase cyclophilin type n=1 Tax=Niabella soli DSM 19437 RepID=H1NPX1_9SPHI
Peptidylprolyl isomerase {ECO:0000313|EMBL:AHF14895.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
SCNpilot_expt_1000_bf_scaffold_106_21
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(23540..26002)
DNA (2463bp) protein (821aa)
TonB-dependent receptor plug n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TK04_NIAKG rbh
TonB-dependent receptor plug rbh
TonB-dependent receptor plug {ECO:0000313|EMBL:AEW02942.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_1000_bf_scaffold_106_22
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

26183..26560
DNA (378bp) protein (126aa)
glycine cleavage system protein H n=1 Tax=Niabella aurantiaca RepID=UPI00036BDE24
Glycine cleavage system H protein {ECO:0000256|HAMAP-Rule:MF_00272}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
Glycine cleavage system H protein; K02437 glycine cleavage system H protein
SCNpilot_expt_1000_bf_scaffold_106_23
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

26631..27035
DNA (405bp) protein (135aa)
VanZ family protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NQS9_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:AHF17753.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
SCNpilot_expt_1000_bf_scaffold_106_24

Not on your lists

comp(27522..28154)
DNA (633bp) protein (211aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI00037087A7
Uncharacterized protein {ECO:0000313|EMBL:AIA19131.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_106_25
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(28264..29331)
DNA (1068bp) protein (356aa)
Peptide chain release factor 1 n=1 Tax=Niabella soli DSM 19437 RepID=H1NRH1_9SPHI
Peptide chain release factor 1 {ECO:0000256|HAMAP-Rule:MF_00093}; Short=RF-1 {ECO:0000256|HAMAP-Rule:MF_00093};; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
peptide chain release factor 1 (bRF-1); K02835 peptide chain release factor 1
SCNpilot_expt_1000_bf_scaffold_106_26
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

29413..30564
DNA (1152bp) protein (384aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI0003809E8D
amidohydrolase
Amidohydrolase {ECO:0000313|EMBL:AEW01974.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_1000_bf_scaffold_106_27
Sporocytophaga myxococcoides, Sporocytophaga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

30578..32506
DNA (1929bp) protein (643aa)
yhjA; cytochrome C peroxidase (EC:1.11.1.5); K00428 cytochrome c peroxidase [EC:1.11.1.5]
Possible cytochrome C peroxidase n=1 Tax=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) RepID=Q11QF6_CYTH3
Uncharacterized protein {ECO:0000313|EMBL:GAL86193.1}; TaxID=153721 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Sporocytophaga.;" source="Sporocytophaga myxococcoides.;"
SCNpilot_expt_1000_bf_scaffold_106_28
Sporocytophaga myxococcoides, Sporocytophaga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

32756..33115
DNA (360bp) protein (120aa)
Uncharacterized protein {ECO:0000313|EMBL:GAL86194.1}; TaxID=153721 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Sporocytophaga.;" source="Sporocytophaga myxococcoides.;"
SCNpilot_expt_1000_bf_scaffold_106_29
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(33116..33841)
DNA (726bp) protein (242aa)
DNA repair protein RecO n=1 Tax=Niabella soli DSM 19437 RepID=H1NRG9_9SPHI
DNA repair protein RecO {ECO:0000256|HAMAP-Rule:MF_00201, ECO:0000256|SAAS:SAAS00018750}; Recombination protein O {ECO:0000256|HAMAP-Rule:MF_00201}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
DNA replication and repair protein RecO; K03584 DNA repair protein RecO (recombination protein O)
SCNpilot_expt_1000_bf_scaffold_106_30
unknown

Not on your lists

comp(33975..34844)
DNA (870bp) protein (290aa)

This feature has no annotations

Displaying items 1-30 of 137 in total

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