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SCNpilot_expt_1000_bf_scaffold_747

Search features with annotation key words

Displaying items 1-30 of 45 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_747_1
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

316..834
DNA (519bp) protein (173aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PEK5_CHIPD
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ACU57827.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
SCNpilot_expt_1000_bf_scaffold_747_2
Pedobacter sp. NL19, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

821..1489
DNA (669bp) protein (223aa)
Uncharacterized protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PEK6_CHIPD
Contig80, whole genome shotgun sequence {ECO:0000313|EMBL:KIO75840.1}; TaxID=1503925 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. NL19.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_747_3
Hassallia byssoidea, Hassallia, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(1568..2425)
DNA (858bp) protein (286aa)
Two-component system response regulator n=1 Tax=Formosa sp. AK20 RepID=M7MJG0_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:KIF30742.1}; TaxID=1304833 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Hassallia.;" source="Hassallia byssoidea VB512170.;"
transcriptional regulator, winged helix family
SCNpilot_expt_1000_bf_scaffold_747_4
Haliscomenobacter hydrossis, Haliscomenobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

2572..3555
DNA (984bp) protein (328aa)
Glycosyl hydrolase BNR repeat-containing protein n=1 Tax=Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767 / O) RepID=F4KQE7_HALH1 rbh
glycosyl hydrolase rbh
Glycosyl hydrolase BNR repeat-containing protein {ECO:0000313|EMBL:AEE48973.1}; TaxID=760192 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Saprospiraceae; Haliscomenobacter.;" source="Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767; / O).;"
SCNpilot_expt_1000_bf_scaffold_747_5
Myroides odoratimimus, Myroides, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(3988..7134)
DNA (3147bp) protein (1049aa)
Putative uncharacterized protein n=1 Tax=Myroides odoratimimus CCUG 12901 RepID=H1GXG7_9FLAO rbh
Uncharacterized protein {ECO:0000313|EMBL:EHO09883.1}; TaxID=883154 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Myroides.;" source="Myroides odoratimimus CIP 101113.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_747_6
Oscillatoria nigro-viridis, Oscillatoria, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(7160..8089)
DNA (930bp) protein (310aa)
hypothetical protein n=1 Tax=Pseudomonas fluorescens RepID=UPI00037C93E1
response regulator receiver protein
Response regulator receiver protein {ECO:0000313|EMBL:AFZ08615.1}; TaxID=179408 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Oscillatoria.;" source="Oscillatoria nigro-viridis PCC 7112.;"
SCNpilot_expt_1000_bf_scaffold_747_7
Oceanobacillus oncorhynchi, Oceanobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(8082..10835)
DNA (2754bp) protein (918aa)
hypothetical protein n=1 Tax=Pseudomonas fluorescens RepID=UPI000376F47F rbh
EcoKI restriction-modification system protein HsdS {ECO:0000313|EMBL:CEI80370.1}; TaxID=545501 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Oceanobacillus.;" source="Oceanobacillus oncorhynchi.;"
type I restriction-modification system methyltransferase subunit
SCNpilot_expt_1000_bf_scaffold_747_8
BJP_IG2103_Bacteroidetes_41_9, Bacteroidetes, Bacteria

Not on your lists

comp(10841..12805)
DNA (1965bp) protein (655aa)
hypothetical protein; K01154 type I restriction enzyme, S subunit [EC:3.1.21.3]
restriction endonuclease n=1 Tax=Flavobacteriaceae bacterium HQM9 RepID=UPI000248E871 rbh
Tax=BJP_IG2103_Bacteroidetes_41_9
SCNpilot_expt_1000_bf_scaffold_747_9
Cecembia lonarensis, Cecembia, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(12798..14429)
DNA (1632bp) protein (544aa)
Putative type I restriction enzymeP M protein {ECO:0000313|EMBL:EKB47832.1}; EC=2.1.1.72 {ECO:0000313|EMBL:EKB47832.1};; TaxID=1225176 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Cecembia.;" source="Cecembia lonarensis LW9.;"
N-6 DNA methylase; K03427 type I restriction enzyme M protein [EC:2.1.1.72]
hypothetical protein n=1 Tax=Dyadobacter beijingensis RepID=UPI000380BDDA rbh
SCNpilot_expt_1000_bf_scaffold_747_10
Cecembia lonarensis, Cecembia, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(14433..17504)
DNA (3072bp) protein (1024aa)
Type-1 restriction enzyme R protein {ECO:0000313|EMBL:EKB47833.1}; EC=3.1.21.3 {ECO:0000313|EMBL:EKB47833.1};; TaxID=1225176 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Cecembia.;" source="Cecembia lonarensis LW9.;"
type I restriction enzyme, R subunit n=1 Tax=Dyadobacter beijingensis RepID=UPI000373A81D rbh
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_747_11
Fluviicola taffensis, Fluviicola, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(17522..17728)
DNA (207bp) protein (69aa)
Helix-turn-helix domain protein n=1 Tax=Fluviicola taffensis (strain DSM 16823 / RW262 / RW262) RepID=F2IJU4_FLUTR
helix-turn-helix domain-containing protein
Helix-turn-helix domain protein {ECO:0000313|EMBL:AEA45003.1}; TaxID=755732 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Cryomorphaceae; Fluviicola.;" source="Fluviicola taffensis (strain DSM 16823 / RW262 / RW262).;"
SCNpilot_expt_1000_bf_scaffold_747_12
Chryseobacterium gleum, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(18812..22096)
DNA (3285bp) protein (1095aa)
Helicase C-terminal domain protein n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=D7W0Z1_9FLAO rbh
Helicase C-terminal domain protein {ECO:0000313|EMBL:EFK36167.1}; TaxID=525257 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium gleum ATCC 35910.;"
DNA/RNA helicase, C-terminal protein
SCNpilot_expt_1000_bf_scaffold_747_13
Flexistipes sinusarabici, Flexistipes, Deferribacterales, Deferribacteres, Deferribacteres, Bacteria

Not on your lists

comp(22136..22765)
DNA (630bp) protein (210aa)
Uncharacterized protein n=1 Tax=Flexistipes sinusarabici (strain DSM 4947 / MAS 10) RepID=F8E8Y7_FLESM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI14111.1}; TaxID=717231 species="Bacteria; Deferribacteres; Deferribacterales; Deferribacteraceae; Flexistipes.;" source="Flexistipes sinusarabici (strain DSM 4947 / MAS 10).;"
SCNpilot_expt_1000_bf_scaffold_747_14
Emticicia oligotrophica, Emticicia, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(22782..25064)
DNA (2283bp) protein (761aa)
UBA/THIF-type NAD/FAD binding protein n=1 Tax=Emticicia oligotrophica (strain DSM 17448 / GPTSA100-15) RepID=I2F0M1_EMTOG rbh
UBA/THIF-type NAD/FAD binding protein rbh
UBA/THIF-type NAD/FAD binding protein {ECO:0000313|EMBL:AFK05474.1}; TaxID=929562 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Emticicia.;" source="Emticicia oligotrophica (strain DSM 17448 / GPTSA100-15).;"
SCNpilot_expt_1000_bf_scaffold_747_15
Hymenobacter sp. APR13, Hymenobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(25051..26211)
DNA (1161bp) protein (387aa)
Cobyric acid synthase CobQ n=1 Tax=Emticicia oligotrophica (strain DSM 17448 / GPTSA100-15) RepID=I2F0M0_EMTOG rbh
Uncharacterized protein {ECO:0000313|EMBL:AII54507.1}; TaxID=1356852 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Hymenobacter.;" source="Hymenobacter sp. APR13.;"
cobyric acid synthase CobQ rbh
SCNpilot_expt_1000_bf_scaffold_747_16
RBG_16_Caldithrix_48_16_curated, Caldithrix, Bacteria

Not on your lists

comp(26527..29274)
DNA (2748bp) protein (916aa)
hypothetical protein n=1 Tax=Cytophaga aurantiaca RepID=UPI00036739F4 rbh
ATPase rbh
Tax=RBG_16_Caldithrix_48_16_curated
SCNpilot_expt_1000_bf_scaffold_747_17
Flavobacterium subsaxonicum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

29566..31035
DNA (1470bp) protein (490aa)
Resolvase domain n=1 Tax=Leadbetterella byssophila (strain DSM 17132 / KACC 11308 / 4M15) RepID=E4RXZ2_LEAB4 rbh
Recombinase {ECO:0000313|EMBL:KGO91028.1}; TaxID=1121898 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium subsaxonicum WB 4.1-42 = DSM 21790.;"
resolvase domain rbh
SCNpilot_expt_1000_bf_scaffold_747_18
Elizabethkingia anophelis, Elizabethkingia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

31041..31205
DNA (165bp) protein (55aa)
Uncharacterized protein n=2 Tax=Elizabethkingia anophelis RepID=L8K603_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:ELR79490.1}; TaxID=1246994 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Elizabethkingia.;" source="Elizabethkingia anophelis R26.;"
SCNpilot_expt_1000_bf_scaffold_747_19
Pseudopedobacter saltans, Pseudopedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

31787..32110
DNA (324bp) protein (108aa)
Uncharacterized protein n=1 Tax=Sphingobacterium sp. IITKGP-BTPF85 RepID=T0MDB7_9SPHI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADY50683.1}; TaxID=762903 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pseudopedobacter.;" source="Pseudopedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 /; LMG 10337 / NBRC 100064 / NCIMB 13643) (Pedobacter saltans).;"
SCNpilot_expt_1000_bf_scaffold_747_20
Pseudopedobacter saltans, Pseudopedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

32305..36624
DNA (4320bp) protein (1440aa)
Heavy metal efflux pump, CzcA family n=1 Tax=Pedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) RepID=F0SCU3_PEDSD rbh
Heavy metal efflux pump, CzcA family {ECO:0000313|EMBL:ADY50682.1}; Flags: Precursor;; TaxID=762903 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pseudopedobacter.;" source="Pseudopedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 /; LMG 10337 / NBRC 100064 / NCIMB 13643) (Pedobacter saltans).;"
CzcA family heavy metal efflux pump; K15726 cobalt-zinc-cadmium resistance protein CzcA rbh
SCNpilot_expt_1000_bf_scaffold_747_21
Pedobacter antarcticus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

36958..37965
DNA (1008bp) protein (336aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Pedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) RepID=F0SCU2_PEDSD
Secretion protein HylD {ECO:0000313|EMBL:KEQ30137.1}; TaxID=1358423 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter antarcticus 4BY.;"
RND family efflux transporter MFP subunit
SCNpilot_expt_1000_bf_scaffold_747_22
Pedobacter antarcticus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

37983..38570
DNA (588bp) protein (196aa)
hypothetical protein n=1 Tax=Cytophagales str. B6 RepID=UPI0003B79C26
Uncharacterized protein {ECO:0000313|EMBL:KEQ30138.1}; TaxID=1358423 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter antarcticus 4BY.;"
metal dependent phosphohydrolase
SCNpilot_expt_1000_bf_scaffold_747_23
Chryseobacterium sp. CF314, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

38572..39318
DNA (747bp) protein (249aa)
methyltransferase; K15256 tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-]
Methyltransferase, putative n=1 Tax=Chryseobacterium sp. CF314 RepID=J2K456_9FLAO rbh
Methyltransferase, putative {ECO:0000313|EMBL:EJL74960.1}; Flags: Precursor;; TaxID=1144316 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium sp. CF314.;"
SCNpilot_expt_1000_bf_scaffold_747_24
Chryseobacterium sp. CF314, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

39315..40037
DNA (723bp) protein (241aa)
Uncharacterized protein n=1 Tax=Chryseobacterium sp. CF314 RepID=J3CNC7_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:EJL74961.1}; Flags: Precursor;; TaxID=1144316 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium sp. CF314.;"
S-isoprenylcysteine methyltransferase-like protein
SCNpilot_expt_1000_bf_scaffold_747_25
Pedobacter antarcticus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

40080..40961
DNA (882bp) protein (294aa)
Uncharacterized protein n=1 Tax=Flavobacterium sp. F52 RepID=J1AIV1_9FLAO rbh
Membrane protein {ECO:0000313|EMBL:KEQ30140.1}; TaxID=1358423 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter antarcticus 4BY.;"
hypothetical protein; K08994 putative membrane protein
SCNpilot_expt_1000_bf_scaffold_747_26
Pedobacter antarcticus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

40995..41471
DNA (477bp) protein (159aa)
hypothetical protein n=1 Tax=Flavobacterium sp. WG21 RepID=UPI00037A77A1
Membrane protein {ECO:0000313|EMBL:KEQ30141.1}; TaxID=1358423 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter antarcticus 4BY.;"
mgtC; putative Mg(2+) transporter, MgtC; K07507 putative Mg2+ transporter-C (MgtC) family protein
SCNpilot_expt_1000_bf_scaffold_747_27
Pedobacter antarcticus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

41446..42423
DNA (978bp) protein (326aa)
Putative uncharacterized protein n=1 Tax=Flavobacterium branchiophilum (strain FL-15) RepID=G2Z6W8_FLABF
Uncharacterized protein {ECO:0000313|EMBL:KEQ30142.1}; TaxID=1358423 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter antarcticus 4BY.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_747_28
Pedobacter antarcticus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

42429..44465
DNA (2037bp) protein (679aa)
ATPase P (EC:3.6.3.5); K01534 Cd2+/Zn2+-exporting ATPase [EC:3.6.3.3 3.6.3.5]
Heavy metal-translocating P-type ATPase n=1 Tax=Flavobacterium sp. F52 RepID=J1KWC6_9FLAO rbh
Metal ABC transporter ATPase {ECO:0000313|EMBL:KEQ30144.1}; TaxID=1358423 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter antarcticus 4BY.;"
SCNpilot_expt_1000_bf_scaffold_747_29
Pedobacter antarcticus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

44528..45382
DNA (855bp) protein (285aa)
hypothetical protein n=1 Tax=Lewinella cohaerens RepID=UPI00036A487A
ATPase {ECO:0000313|EMBL:KEQ30145.1}; TaxID=1358423 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter antarcticus 4BY.;"
ATP-cone domain-containing protein
SCNpilot_expt_1000_bf_scaffold_747_30
Pedobacter antarcticus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

45390..45938
DNA (549bp) protein (183aa)
Uncharacterized protein n=1 Tax=Flavobacterium limnosediminis JC2902 RepID=V6SPE6_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:KEQ30146.1}; TaxID=1358423 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter antarcticus 4BY.;"
hypothetical protein
Displaying items 1-30 of 45 in total

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