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SCNpilot_expt_1000_bf_scaffold_1018

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1018_1
unknown

Not on your lists

comp(2..157)
DNA (156bp) protein (52aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1018_2
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(408..986)
DNA (579bp) protein (193aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
peptide deformylase; K01462 peptide deformylase [EC:3.5.1.88]
Peptide deformylase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PB28_CHIPD
SCNpilot_expt_1000_bf_scaffold_1018_3
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(1046..1447)
DNA (402bp) protein (134aa)
Holliday junction resolvase; K07447 putative holliday junction resolvase [EC:3.1.-.-]
Putative Holliday junction resolvase {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086483}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086510};; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
Holliday junction resolvase n=1 Tax=Niabella aurantiaca RepID=UPI0003716BB9
SCNpilot_expt_1000_bf_scaffold_1018_4
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(1587..2528)
DNA (942bp) protein (314aa)
4-hydroxybenzoate octaprenyltransferase; K03179 4-hydroxybenzoate octaprenyltransferase [EC:2.5.1.-] rbh
4-hydroxybenzoate octaprenyltransferase {ECO:0000313|EMBL:AEW00694.1}; EC=2.5.1.- {ECO:0000313|EMBL:AEW00694.1};; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
4-hydroxybenzoate octaprenyltransferase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TI77_NIAKG rbh
SCNpilot_expt_1000_bf_scaffold_1018_5
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(2561..3076)
DNA (516bp) protein (172aa)
RNA methyltransferase n=1 Tax=Niabella aurantiaca RepID=UPI0003804E78
RNA methyltransferase {ECO:0000313|EMBL:AHF15201.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
tRNA/rRNA methyltransferase SpoU
SCNpilot_expt_1000_bf_scaffold_1018_6
GWF1_Flavobacteria_32_7_curated, Flavobacteriia, Bacteroidetes, Bacteria

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comp(3231..4922)
DNA (1692bp) protein (564aa)
Putative uncharacterized protein id=2837068 bin=GWF1_Flavobacteria_32_7 species=Flavobacteria bacterium BAL38 genus=unknown taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWF1_Flavobacteria_32_7 organism_group=Bacteroidetes
hypothetical protein
Tax=GWF1_Flavobacteria_32_7_curated
SCNpilot_expt_1000_bf_scaffold_1018_7
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

5024..7618
DNA (2595bp) protein (865aa)
DNA mismatch repair protein MutS n=1 Tax=Niabella soli DSM 19437 RepID=H1NNR9_9SPHI
DNA mismatch repair protein MutS {ECO:0000256|HAMAP-Rule:MF_00096, ECO:0000256|SAAS:SAAS00184333}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
DNA mismatch repair protein MutS; K03555 DNA mismatch repair protein MutS
SCNpilot_expt_1000_bf_scaffold_1018_8
unknown

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7696..8295
DNA (600bp) protein (200aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1018_9
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(8350..8739)
DNA (390bp) protein (130aa)
Nuclear protein SET n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TPC7_NIAKG
nuclear protein SET; K07117
Nuclear protein SET {ECO:0000313|EMBL:AEV96733.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_1000_bf_scaffold_1018_10
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

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8825..10219
DNA (1395bp) protein (465aa)
Magnesium transporter n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TPC6_NIAKG
magnesium transporter; K06213 magnesium transporter
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCNpilot_expt_1000_bf_scaffold_1018_11
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

10347..12182
DNA (1836bp) protein (612aa)
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] {ECO:0000256|HAMAP-Rule:MF_00164, ECO:0000256|SAAS:SAAS00039584}; EC=2.6.1.16 {ECO:0000256|HAMAP-Rule:MF_00164};; D-fructose-6-phosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; GFAT {ECO:0000256|HAMAP-Rule:MF_00164}; Glucosamine-6-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00164}; Hexosephosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; L-glutamine--D-fructose-6-phosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_0016
glutamine--fructose-6-phosphate transaminase; K00820 glucosamine--fructose-6-phosphate aminotransferase (isomerizing) [EC:2.6.1.16]
glutamine amidotransferase n=1 Tax=Niabella aurantiaca RepID=UPI0003713D32
SCNpilot_expt_1000_bf_scaffold_1018_12
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

12215..14473
DNA (2259bp) protein (753aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TPC3_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEV96729.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCNpilot_expt_1000_bf_scaffold_1018_13
unknown

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comp(14838..15077)
DNA (240bp) protein (80aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1018_14
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(15152..16525)
DNA (1374bp) protein (458aa)
GTPase Der n=1 Tax=Niabella soli DSM 19437 RepID=H1NKU3_9SPHI
GTPase Der {ECO:0000256|HAMAP-Rule:MF_00195, ECO:0000256|RuleBase:RU004481}; GTP-binding protein EngA {ECO:0000256|HAMAP-Rule:MF_00195}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
GTP-binding protein engA; K03977 GTP-binding protein
SCNpilot_expt_1000_bf_scaffold_1018_15
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(16559..17425)
DNA (867bp) protein (289aa)
GTPase Era n=1 Tax=Niabella aurantiaca RepID=UPI00035D1897
GTPase Era {ECO:0000256|HAMAP-Rule:MF_00367, ECO:0000256|SAAS:SAAS00085723}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
GTP-binding protein Era-like-protein; K03595 GTP-binding protein Era
SCNpilot_expt_1000_bf_scaffold_1018_16
RIFOXYA2_FULL_Elusimicrobia_39_19_curated, Elusimicrobia, Bacteria

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comp(17529..18044)
DNA (516bp) protein (172aa)
Uncharacterized protein n=1 Tax=Desulfobacter postgatei 2ac9 RepID=I5B161_9DELT
Tax=RIFOXYA2_FULL_Elusimicrobia_39_19_curated
SCNpilot_expt_1000_bf_scaffold_1018_17
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(18428..19138)
DNA (711bp) protein (237aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00036CDE54
Uncharacterized protein {ECO:0000313|EMBL:GAO45715.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1018_18
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

19520..21679
DNA (2160bp) protein (720aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000374E8F3
TonB-dependent receptor; K02014 iron complex outermembrane recepter protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
Displaying 18 items

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