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SCNpilot_expt_1000_bf_scaffold_1083

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1083_1
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(2..397)
DNA (396bp) protein (132aa)
Uncharacterized protein n=1 Tax=Sphingobacterium spiritivorum ATCC 33861 RepID=D7VNM7_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:EFK57524.1}; TaxID=525373 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33861.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1083_2
Sphingobacterium sp. 21, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(1145..1417)
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4C5V1_SPHS2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADZ80116.1}; TaxID=743722 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. (strain 21).;"
SCNpilot_expt_1000_bf_scaffold_1083_3
Chryseobacterium sp. StRB126, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(1429..1719)
DNA (291bp) protein (97aa)
Putative uncharacterized protein n=1 Tax=Myroides odoratimimus CCUG 12901 RepID=H1GZC9_9FLAO
TraB protein {ECO:0000313|EMBL:BAP31934.1}; TaxID=878220 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium sp. StRB126.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1083_4
Chryseobacterium gleum, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(1733..2137)
DNA (405bp) protein (135aa)
Uncharacterized protein n=2 Tax=Bacteroidetes RepID=C2G235_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:EFK33908.1}; TaxID=525257 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium gleum ATCC 35910.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1083_5
Sphingobacterium sp. ML3W, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(2147..2914)
DNA (768bp) protein (256aa)
conjugal transfer protein TraA n=1 Tax=Empedobacter brevis RepID=UPI000368C72F
Conjugal transfer protein TraA {ECO:0000313|EMBL:AIM37856.1}; TaxID=1538644 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. ML3W.;"
chromosome partitioning ATPase
SCNpilot_expt_1000_bf_scaffold_1083_6
Flavobacterium frigoris, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

3649..4092
DNA (444bp) protein (148aa)
Putative uncharacterized protein n=1 Tax=Flavobacterium frigoris PS1 RepID=H7FW49_9FLAO
Putative uncharacterized protein {ECO:0000313|EMBL:EIA07278.1}; TaxID=1086011 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium frigoris PS1.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1083_7
Pseudopedobacter saltans, Pseudopedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

4089..5405
DNA (1317bp) protein (439aa)
Relaxase/mobilization nuclease family protein n=1 Tax=Pedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) RepID=F0S6W1_PEDSD
Relaxase/mobilization nuclease family protein
Relaxase/mobilization nuclease family protein {ECO:0000313|EMBL:ADY52221.1}; TaxID=762903 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pseudopedobacter.;" source="Pseudopedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 /; LMG 10337 / NBRC 100064 / NCIMB 13643) (Pedobacter saltans).;"
SCNpilot_expt_1000_bf_scaffold_1083_8
Dysgonomonas gadei, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(5407..6375)
DNA (969bp) protein (323aa)
Putative uncharacterized protein n=1 Tax=Dysgonomonas gadei ATCC BAA-286 RepID=F5ITY6_9PORP rbh
Uncharacterized protein {ECO:0000313|EMBL:EGJ99229.1}; TaxID=742766 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas gadei ATCC BAA-286.;"
sodium:bile acid symporter family protein rbh
SCNpilot_expt_1000_bf_scaffold_1083_9
Pontibacter korlensis, Pontibacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(6460..7305)
DNA (846bp) protein (282aa)
hypothetical protein n=1 Tax=Pontibacter roseus RepID=UPI0003700C09 rbh
Beta-lactamase {ECO:0000313|EMBL:AKD05733.1}; TaxID=400092 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Pontibacter.;" source="Pontibacter korlensis.;"
Zn-dependent hydrolase
SCNpilot_expt_1000_bf_scaffold_1083_10
Pedobacter antarcticus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(7450..7839)
DNA (390bp) protein (130aa)
Ketosteroid isomerase-like protein n=1 Tax=Flavobacterium sp. CF136 RepID=J2SJF7_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:KEQ30177.1}; TaxID=1358423 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter antarcticus 4BY.;"
hypothetical protein; K06893
SCNpilot_expt_1000_bf_scaffold_1083_11
Flavobacterium sp. CF136, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(7902..8279)
DNA (378bp) protein (126aa)
Uncharacterized protein n=1 Tax=Flavobacterium sp. CF136 RepID=J3C728_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:EJL65586.1}; TaxID=1144313 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. CF136.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1083_12
Pedobacter antarcticus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

8392..8724
DNA (333bp) protein (111aa)
Putative transcriptional regulator n=1 Tax=Flavobacterium sp. CF136 RepID=J2JC02_9FLAO
Integrase {ECO:0000313|EMBL:KEQ30176.1}; TaxID=1358423 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter antarcticus 4BY.;"
putative HTH-type transcriptional activator HxlR
SCNpilot_expt_1000_bf_scaffold_1083_13
Sphingobacterium sp. PM2-P1-29, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

8832..10832
DNA (2001bp) protein (667aa)
Putative uncharacterized protein n=1 Tax=Myroides odoratimimus CCUG 12901 RepID=H1GZC4_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:CDS98960.1}; TaxID=403776 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. PM2-P1-29.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1083_14

Not on your lists

comp(11193..11525)
DNA (333bp) protein (111aa)
Uncharacterized protein {ECO:0000313|EMBL:KKN63530.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
SCNpilot_expt_1000_bf_scaffold_1083_15
unknown

Not on your lists

comp(11540..11704)
DNA (165bp) protein (55aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1083_16
Bergeyella zoohelcum, Bergeyella, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(11733..12737)
DNA (1005bp) protein (335aa)
Uncharacterized protein n=2 Tax=Bergeyella zoohelcum RepID=K1LMK1_9FLAO rbh
Uncharacterized protein {ECO:0000313|EMBL:EKB55926.1}; TaxID=883096 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Bergeyella.;" source="Bergeyella zoohelcum ATCC 43767.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_1083_17
unknown

Not on your lists

comp(12800..13249)
DNA (450bp) protein (150aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1083_18
Sphingobacterium sp. ACCC 05744, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(13474..13875)
DNA (402bp) protein (134aa)
hypothetical protein n=1 Tax=Flavobacterium rivuli RepID=UPI000373CE41
Uncharacterized protein {ECO:0000313|EMBL:KGE13696.1}; TaxID=1229276 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. ACCC 05744.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1083_19
Sphingobacterium sp. 21, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(13879..14241)
DNA (363bp) protein (121aa)
Helix-turn-helix domain protein n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4CF53_SPHS2
helix-turn-helix domain-containing protein
Helix-turn-helix domain protein {ECO:0000313|EMBL:ADZ76746.1}; TaxID=743722 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. (strain 21).;"
SCNpilot_expt_1000_bf_scaffold_1083_20
Sphingobacterium sp. 21, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(14258..14644)
DNA (387bp) protein (129aa)
Helix-turn-helix domain protein n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4CF52_SPHS2
helix-turn-helix domain-containing protein
Helix-turn-helix domain protein {ECO:0000313|EMBL:ADZ76745.1}; TaxID=743722 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. (strain 21).;"
SCNpilot_expt_1000_bf_scaffold_1083_21
Sphingobacterium sp. 21, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(14653..15045)
DNA (393bp) protein (131aa)
Helix-turn-helix domain protein n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4CF51_SPHS2
helix-turn-helix domain-containing protein
Helix-turn-helix domain protein {ECO:0000313|EMBL:ADZ76744.1}; TaxID=743722 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. (strain 21).;"
SCNpilot_expt_1000_bf_scaffold_1083_22
Sphingobacterium sp. 21, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

15367..16464
DNA (1098bp) protein (366aa)
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4CF49_SPHS2
alkyl hydroperoxide reductase
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen {ECO:0000313|EMBL:ADZ76742.1}; TaxID=743722 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. (strain 21).;"
SCNpilot_expt_1000_bf_scaffold_1083_23
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

16487..19711
DNA (3225bp) protein (1075aa)
TonB-dependent receptor plug n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1YBM0_9SPHI
TonB-dependent receptor plug {ECO:0000313|EMBL:EHQ25091.1}; Flags: Precursor;; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
TonB-dependent receptor
SCNpilot_expt_1000_bf_scaffold_1083_24
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

19730..21091
DNA (1362bp) protein (454aa)
RagB/SusD family protein n=1 Tax=Pedobacter agri RepID=UPI00029ACF57
Carbohydrate-binding protein SusD {ECO:0000313|EMBL:AHF16952.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
RagB/SusD family protein
SCNpilot_expt_1000_bf_scaffold_1083_25
unknown

Not on your lists

21033..21233
DNA (201bp) protein (67aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1083_26
unknown

Not on your lists

comp(21212..21529)
DNA (318bp) protein (106aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1083_27
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(21534..22052)
DNA (519bp) protein (173aa)
Uncharacterized protein n=2 Tax=Sphingobacterium spiritivorum RepID=C2FXG7_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:EFK57587.1}; TaxID=525373 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33861.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1083_28
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(22198..23142)
DNA (945bp) protein (315aa)
Uncharacterized protein n=1 Tax=Sphingobacterium spiritivorum ATCC 33861 RepID=D7VNU1_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:EFK57588.1}; TaxID=525373 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33861.;"
AraC family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1083_29
Chryseobacterium indologenes, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(23345..24172)
DNA (828bp) protein (276aa)
Helicase C-terminal domain protein n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=D7VZW3_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:GAE65854.1}; TaxID=1218103 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium indologenes NBRC 14944.;"
helicase
Displaying 29 items

View Taxonomy