ggKbase home page

SCNpilot_expt_1000_bf_scaffold_41

Search features with annotation key words

Displaying items 1-30 of 435 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_41_1
BJP_IG2103_SUB10_Xanthomonadales_61_45, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


3..74
DNA (72bp) protein (24aa)
30S ribosomal protein S10 n=11 Tax=Stenotrophomonas RepID=RS10_STRM5
30S ribosomal protein S10; K02946 small subunit ribosomal protein S10
Tax=BJP_IG2103_SUB10_Xanthomonadales_61_45
SCNpilot_expt_1000_bf_scaffold_41_2
unknown

Not on your lists


318..629
DNA (312bp) protein (104aa)
SCNpilot_expt_1000_bf_scaffold_41_3
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


663..1304
DNA (642bp) protein (214aa)
50S ribosomal protein L3 n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WL69_9GAMM
50S ribosomal protein L3 {ECO:0000256|HAMAP-Rule:MF_01325, ECO:0000256|RuleBase:RU003906}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
LSU ribosomal protein L3P
SCNpilot_expt_1000_bf_scaffold_41_4
Frateuria aurantia, Frateuria, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


1316..1921
DNA (606bp) protein (202aa)
50S ribosomal protein L4 n=1 Tax=Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB 13370) RepID=H8KYK4_FRAAD
50S ribosomal protein L4; K02926 large subunit ribosomal protein L4
50S ribosomal protein L4 {ECO:0000256|HAMAP-Rule:MF_01328}; TaxID=767434 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Frateuria.;" source="Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB; 13370) (Acetobacter aurantius).;"
SCNpilot_expt_1000_bf_scaffold_41_5
R_Gammaproteobacteria_63_22, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


1918..2208
DNA (291bp) protein (97aa)
50S ribosomal protein L23 n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B792AD
rplW; 50S ribosomal protein L23; K02892 large subunit ribosomal protein L23
Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_63_22_curated
SCNpilot_expt_1000_bf_scaffold_41_6
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


2266..3048
DNA (783bp) protein (261aa)
50S ribosomal protein L2 n=1 Tax=Rudaea cellulosilytica RepID=UPI000360E4AE
50S ribosomal protein L2 {ECO:0000256|HAMAP-Rule:MF_01320}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
rplB; 50S ribosomal protein L2; K02886 large subunit ribosomal protein L2
SCNpilot_expt_1000_bf_scaffold_41_7
BJP_08E140C01_Xanthomonadales_64_42, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


3061..3339
DNA (279bp) protein (93aa)
30S ribosomal protein S19 n=1 Tax=Rudaea cellulosilytica RepID=UPI00036E0658
SSU ribosomal protein S19P
Tax=BJP_08E140C01_Xanthomonadales_64_42
SCNpilot_expt_1000_bf_scaffold_41_8
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


3351..3686
DNA (336bp) protein (112aa)
50S ribosomal protein L22 n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002F86420
rplV; 50S ribosomal protein L22; K02890 large subunit ribosomal protein L22
50S ribosomal protein L22 {ECO:0000256|HAMAP-Rule:MF_01331, ECO:0000256|RuleBase:RU004008}; TaxID=40324 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (Pseudomonas maltophilia) (Xanthomonas; maltophilia).;"
SCNpilot_expt_1000_bf_scaffold_41_9
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


3704..4411
DNA (708bp) protein (236aa)
Small subunit ribosomal protein S3 n=2 Tax=Xanthomonas RepID=V7ZHI6_9XANT
30S ribosomal protein S3 {ECO:0000256|HAMAP-Rule:MF_01309}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
30S ribosomal protein S3; K02982 small subunit ribosomal protein S3
SCNpilot_expt_1000_bf_scaffold_41_10
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


4414..4827
DNA (414bp) protein (138aa)
50S ribosomal protein L16 n=1 Tax=Dyella japonica RepID=UPI000305A51A
50S ribosomal protein L16 {ECO:0000256|HAMAP-Rule:MF_01342, ECO:0000256|RuleBase:RU004414}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
50S ribosomal protein L16; K02878 large subunit ribosomal protein L16
SCNpilot_expt_1000_bf_scaffold_41_11
Pseudoxanthomonas spadix, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


4827..5012
DNA (186bp) protein (62aa)
50S ribosomal protein L29 n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7URZ3_PSEUP
50S ribosomal protein L29; K02904 large subunit ribosomal protein L29
50S ribosomal protein L29 {ECO:0000256|HAMAP-Rule:MF_00374}; TaxID=1045855 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas spadix (strain BD-a59).;"
SCNpilot_expt_1000_bf_scaffold_41_12
GWF1_Xanthomonadales_69_6_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


5024..5287
DNA (264bp) protein (88aa)
30S ribosomal protein S17 id=2431961 bin=GWF1_Xanthomonadales_69_6 species=Pseudoxanthomonas suwonensis genus=Pseudoxanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
rpsQ; 30S ribosomal protein S17; K02961 small subunit ribosomal protein S17
Tax=GWF1_Xanthomonadales_69_6_curated
SCNpilot_expt_1000_bf_scaffold_41_13
Pseudoxanthomonas spadix, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


5310..5678
DNA (369bp) protein (123aa)
50S ribosomal protein L14 n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7URZ1_PSEUP
rplN; 50S ribosomal protein L14; K02874 large subunit ribosomal protein L14
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367, ECO:0000256|RuleBase:RU003950}; TaxID=1045855 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas spadix (strain BD-a59).;"
SCNpilot_expt_1000_bf_scaffold_41_14
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


5692..6006
DNA (315bp) protein (105aa)
50S ribosomal protein L24 n=1 Tax=Dyella ginsengisoli RepID=UPI0003453922
ribosomal protein L24, bacterial/organelle
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_1000_bf_scaffold_41_15
Arenimonas oryziterrae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


6018..6557
DNA (540bp) protein (180aa)
50S ribosomal protein L5 n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B4DF36
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333}; TaxID=1121015 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas oryziterrae DSM 21050 = YC6267.;"
ribosomal protein L5
SCNpilot_expt_1000_bf_scaffold_41_16
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


6575..6880
DNA (306bp) protein (102aa)
30S ribosomal protein S14 n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI000373523B
30S ribosomal protein S14; K02954 small subunit ribosomal protein S14
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
SCNpilot_expt_1000_bf_scaffold_41_17
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


6921..7316
DNA (396bp) protein (132aa)
30S ribosomal protein S8 n=1 Tax=Rhodanobacter sp. 115 RepID=I4WNK2_9GAMM
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
30S ribosomal protein S8; K02994 small subunit ribosomal protein S8
SCNpilot_expt_1000_bf_scaffold_41_18
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


7330..7857
DNA (528bp) protein (176aa)
50S ribosomal protein L6 n=1 Tax=Rhodanobacter sp. 115 RepID=I4WNK3_9GAMM
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
LSU ribosomal protein L6P
SCNpilot_expt_1000_bf_scaffold_41_19
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


7918..8271
DNA (354bp) protein (118aa)
50S ribosomal protein L18 n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VM87_9GAMM
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
LSU ribosomal protein L18P
SCNpilot_expt_1000_bf_scaffold_41_20
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


8416..8928
DNA (513bp) protein (171aa)
30S ribosomal protein S5 n=1 Tax=Rudaea cellulosilytica RepID=UPI00037C498F
30S ribosomal protein S5 {ECO:0000256|HAMAP-Rule:MF_01307, ECO:0000256|SAAS:SAAS00085406}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
30S ribosomal protein S5; K02988 small subunit ribosomal protein S5
SCNpilot_expt_1000_bf_scaffold_41_21
Frateuria aurantia, Frateuria, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


8918..9115
DNA (198bp) protein (66aa)
50S ribosomal protein L30 n=1 Tax=Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB 13370) RepID=H8KYM1_FRAAD
50S ribosomal protein L30; K02907 large subunit ribosomal protein L30
50S ribosomal protein L30 {ECO:0000256|HAMAP-Rule:MF_01371, ECO:0000256|SAAS:SAAS00032272}; TaxID=767434 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Frateuria.;" source="Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB; 13370) (Acetobacter aurantius).;"
SCNpilot_expt_1000_bf_scaffold_41_22
Arenimonas composti, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


9141..9575
DNA (435bp) protein (145aa)
50S ribosomal protein L15 n=1 Tax=Rudaea cellulosilytica RepID=UPI000364F998
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341, ECO:0000256|RuleBase:RU003889}; TaxID=1121013 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas composti TR7-09 = DSM 18010.;"
50S ribosomal protein L15; K02876 large subunit ribosomal protein L15
SCNpilot_expt_1000_bf_scaffold_41_23
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


9580..10890
DNA (1311bp) protein (437aa)
preprotein translocase subunit SecY n=1 Tax=Dyella japonica RepID=UPI00031E446A
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465, ECO:0000256|RuleBase:RU000537}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
preprotein translocase, SecY subunit
SCNpilot_expt_1000_bf_scaffold_41_24
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


11028..11384
DNA (357bp) protein (119aa)
30S ribosomal protein S13 n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WL48_9GAMM
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
30S ribosomal protein S13
SCNpilot_expt_1000_bf_scaffold_41_25
BJP_IG2103_SUB10_Xanthomonadales_61_45, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


11403..11795
DNA (393bp) protein (131aa)
30S ribosomal protein S11 n=4 Tax=Xanthomonas RepID=D2UBJ4_XANAP
rpsK; 30S ribosomal protein S11; K02948 small subunit ribosomal protein S11
Tax=BJP_IG2103_SUB10_Xanthomonadales_61_45
SCNpilot_expt_1000_bf_scaffold_41_26
Arenimonas metalli, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


11807..12433
DNA (627bp) protein (209aa)
30S ribosomal protein S4 n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B75DD4
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=1384056 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas metalli CF5-1.;"
rpsD; 30S ribosomal protein S4; K02986 small subunit ribosomal protein S4
SCNpilot_expt_1000_bf_scaffold_41_27
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12452..13447
DNA (996bp) protein (332aa)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
DNA-directed RNA polymerase, alpha subunit (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha n=1 Tax=Rudaea cellulosilytica RepID=UPI0003710C20 rbh
SCNpilot_expt_1000_bf_scaffold_41_28
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


13479..13862
DNA (384bp) protein (128aa)
50S ribosomal protein L17 n=1 Tax=Rhodanobacter sp. 115 RepID=I4WNL3_9GAMM
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368, ECO:0000256|RuleBase:RU000661}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
50S ribosomal protein L17; K02879 large subunit ribosomal protein L17
SCNpilot_expt_1000_bf_scaffold_41_29
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14074..14601
DNA (528bp) protein (176aa)
Disulfide bond formation protein B n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WL43_9GAMM
Disulfide bond formation protein B {ECO:0000256|HAMAP-Rule:MF_00286}; Disulfide oxidoreductase {ECO:0000256|HAMAP-Rule:MF_00286}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
disulfide bond formation protein DsbB
SCNpilot_expt_1000_bf_scaffold_41_30
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14693..16093
DNA (1401bp) protein (467aa)
phospho-2-dehydro-3-deoxyheptonate aldolase (EC:2.5.1.54); K01626 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
phospho-2-dehydro-3-deoxyheptonate aldolase n=1 Tax=Dyella ginsengisoli RepID=UPI0003449E0F
Phospho-2-dehydro-3-deoxyheptonate aldolase {ECO:0000313|EMBL:KGQ19475.1}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
Displaying items 1-30 of 435 in total

View Taxonomy