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SCNpilot_expt_1000_bf_scaffold_161

Search features with annotation key words

Displaying items 1-30 of 115 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_161_1
Arenimonas oryziterrae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(80..577)
DNA (498bp) protein (166aa)
electron transporter RnfB n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B47622
Electron transport complex subunit B {ECO:0000256|HAMAP-Rule:MF_00463}; TaxID=1121015 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas oryziterrae DSM 21050 = YC6267.;"
electron transport complex protein RnfB; K03616 electron transport complex protein RnfB
SCNpilot_expt_1000_bf_scaffold_161_2
Arenimonas oryziterrae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(597..1223)
DNA (627bp) protein (209aa)
electron transport complex RsxE subunit n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B35A32
Uncharacterized protein {ECO:0000313|EMBL:KFN41157.1}; TaxID=1121015 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas oryziterrae DSM 21050 = YC6267.;"
Electron transport complex protein RnfA
SCNpilot_expt_1000_bf_scaffold_161_3
BJP_IG2103_SUB10_Xanthomonadales_61_45, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(1228..3387)
DNA (2160bp) protein (720aa)
metG; methionyl-tRNA synthetase (EC:6.1.1.10); K01874 methionyl-tRNA synthetase [EC:6.1.1.10]
methionyl-tRNA synthetase n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B51EBF rbh
Tax=BJP_IG2103_SUB10_Xanthomonadales_61_45
SCNpilot_expt_1000_bf_scaffold_161_4
unknown

Not on your lists

comp(3536..3772)
DNA (237bp) protein (79aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_161_5
unknown

Not on your lists

comp(3905..4372)
DNA (468bp) protein (156aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_161_6
Arenimonas donghaensis, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4517..5608
DNA (1092bp) protein (364aa)
Uncharacterized protein {ECO:0000313|EMBL:KFL37393.1}; TaxID=1121014 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas donghaensis DSM 18148 = HO3-R19.;"
Chromosome partitioning ATPase id=2750032 bin=GWF1_Xanthomonadales_69_6 species=Rhodanobacter sp. 115 genus=Rhodanobacter taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
ATPase involved in chromosome partitioning
SCNpilot_expt_1000_bf_scaffold_161_7
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5705..6274
DNA (570bp) protein (190aa)
Deoxycytidine triphosphate deaminase {ECO:0000256|HAMAP-Rule:MF_00146}; Short=dCTP deaminase {ECO:0000256|HAMAP-Rule:MF_00146};; EC=3.5.4.13 {ECO:0000256|HAMAP-Rule:MF_00146};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
deoxycytidine triphosphate deaminase n=1 Tax=Rudaea cellulosilytica RepID=UPI00037072DE rbh
deoxycytidine triphosphate deaminase
SCNpilot_expt_1000_bf_scaffold_161_8
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6393..6797
DNA (405bp) protein (135aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000372E0E8
Uncharacterized protein {ECO:0000313|EMBL:KGI77323.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_161_9
unknown

Not on your lists

6856..7170
DNA (315bp) protein (105aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_161_10
unknown

Not on your lists

7276..8022
DNA (747bp) protein (249aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_161_11
unknown

Not on your lists

8249..8965
DNA (717bp) protein (239aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_161_12
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9423..10079)
DNA (657bp) protein (219aa)
pcp; pyrrolidone-carboxylate peptidase (5-oxoprolyl-peptidase); K01304 pyroglutamyl-peptidase [EC:3.4.19.3] id=5079169 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
pcp; Pyrrolidone-carboxylate peptidase; K01304 pyroglutamyl-peptidase [EC:3.4.19.3]
Tax=GWE1_Burkholderiales_65_30_curated
SCNpilot_expt_1000_bf_scaffold_161_13
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10076..11047)
DNA (972bp) protein (324aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00036982FE
Uncharacterized protein {ECO:0000313|EMBL:AIF46188.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
conserved membrane protein of unknown function, DUF979
SCNpilot_expt_1000_bf_scaffold_161_14
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11044..11724)
DNA (681bp) protein (227aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000382979C
Membrane protein {ECO:0000313|EMBL:AIF46187.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_161_15
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11721..12494)
DNA (774bp) protein (258aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000370314B rbh
UPF0271 protein HY57_02415 {ECO:0000256|HAMAP-Rule:MF_00691}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
LamB/YcsF family protein; K07160 UPF0271 protein rbh
SCNpilot_expt_1000_bf_scaffold_161_16
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12482..13459)
DNA (978bp) protein (326aa)
urea amidolyase-like protein (EC:6.3.4.6)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00035D3F38
Uncharacterized protein {ECO:0000313|EMBL:AIF46185.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
SCNpilot_expt_1000_bf_scaffold_161_17
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13456..14172)
DNA (717bp) protein (239aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00035D3F38
Allophanate hydrolase {ECO:0000313|EMBL:AHX15480.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
allophanate hydrolase subunit 1
SCNpilot_expt_1000_bf_scaffold_161_18
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14169..14594)
DNA (426bp) protein (142aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003604AAF
Uncharacterized protein {ECO:0000313|EMBL:KGI77322.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
histidine triad (HIT) protein
SCNpilot_expt_1000_bf_scaffold_161_19
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14591..15262)
DNA (672bp) protein (224aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034CF8FB
Carboxymethylenebutenolidase {ECO:0000313|EMBL:AHX13833.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
dienelactone hydrolase-like enzyme
SCNpilot_expt_1000_bf_scaffold_161_20
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15488..17653)
DNA (2166bp) protein (722aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003697FD8
Uncharacterized protein {ECO:0000313|EMBL:KGI77321.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
diguanylate cyclase/serine/threonine protein kinase
SCNpilot_expt_1000_bf_scaffold_161_21
Arenimonas oryziterrae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18001..19320
DNA (1320bp) protein (440aa)
Ribosomal protein S12 methylthiotransferase RimO {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00083292}; Short=S12 MTTase {ECO:0000256|HAMAP-Rule:MF_01865};; Short=S12 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01865};; EC=2.8.4.4 {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00179441};; Ribosomal protein S12 (aspartate-C(3))-methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01865}; Ribosome maturation factor RimO {ECO:0000256|HAMAP-Rule:MF_01865}; TaxID=1121015 species="Bacteria; Pr
ribosomal protein S12 methylthiotransferase n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B52A75 rbh
ribosomal protein S12 methylthiotransferase RimO
SCNpilot_expt_1000_bf_scaffold_161_22
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19332..20162
DNA (831bp) protein (277aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WLD5_9GAMM
Protein of unknown function (DUF3025)
Uncharacterized protein {ECO:0000313|EMBL:AGG88482.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_expt_1000_bf_scaffold_161_23
Xanthomonas albilineans, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20147..20650)
DNA (504bp) protein (168aa)
Transcription elongation factor GreB n=1 Tax=Xanthomonas albilineans (strain GPE PC73 / CFBP 7063) RepID=D2UCA7_XANAP
greB; transcription elongation factor greb (transcript cleavage factor greb) protein; K04760 transcription elongation factor GreB
Transcription elongation factor GreB {ECO:0000256|HAMAP-Rule:MF_00930}; Transcript cleavage factor GreB {ECO:0000256|HAMAP-Rule:MF_00930}; TaxID=380358 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas albilineans (strain GPE PC73 / CFBP 7063).;"
SCNpilot_expt_1000_bf_scaffold_161_24
Lysobacter sp. A03, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20917..22392
DNA (1476bp) protein (492aa)
rhomboid family membrane protein n=1 Tax=Xanthomonas sp. SHU308 RepID=UPI000374AA68
NODE_6, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ98372.1}; TaxID=1199154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter sp. A03.;"
integral membrane protein
SCNpilot_expt_1000_bf_scaffold_161_25
Arenimonas oryziterrae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22688..23596
DNA (909bp) protein (303aa)
cytochrome C551 n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B668B1 rbh
Uncharacterized protein {ECO:0000313|EMBL:KFN41209.1}; TaxID=1121015 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas oryziterrae DSM 21050 = YC6267.;"
cation diffusion facilitator family transporter
SCNpilot_expt_1000_bf_scaffold_161_26
unknown

Not on your lists

comp(23766..24494)
DNA (729bp) protein (243aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_161_27
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24618..25118)
DNA (501bp) protein (167aa)
Starvation-inducible outer membrane lipoprotein n=1 Tax=Rhodanobacter sp. 115 RepID=I4VVL6_9GAMM
Starvation-inducible outer membrane lipoprotein {ECO:0000313|EMBL:EIL91257.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
starvation-inducible outer membrane lipoprotein
SCNpilot_expt_1000_bf_scaffold_161_28
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25115..25858)
DNA (744bp) protein (248aa)
silent information regulator protein Sir2; K12410 NAD-dependent deacetylase [EC:3.5.1.-]
NAD-dependent protein deacylase {ECO:0000256|HAMAP-Rule:MF_01121}; EC=3.5.1.- {ECO:0000256|HAMAP-Rule:MF_01121};; Regulatory protein SIR2 homolog {ECO:0000256|HAMAP-Rule:MF_01121}; TaxID=266117 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129).;"
NAD-dependent protein deacylase n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AWC3_RUBXD
SCNpilot_expt_1000_bf_scaffold_161_29
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26045..28195
DNA (2151bp) protein (717aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VW37_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL91428.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Peptidase S46
SCNpilot_expt_1000_bf_scaffold_161_30
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28449..29375
DNA (927bp) protein (309aa)
tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783}; EC=2.5.1.75 {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783};; Dimethylallyl diphosphate:tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; Isopentenyl-diphosphate:tRNA isopentenyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034CFF1E
tRNA isopentenyltransferase MiaA
Displaying items 1-30 of 115 in total

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