name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
SCNpilot_expt_1000_bf_scaffold_161_1
Arenimonas oryziterrae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(80..577)
|
electron transporter RnfB n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B47622
Electron transport complex subunit B {ECO:0000256|HAMAP-Rule:MF_00463}; TaxID=1121015 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas oryziterrae DSM 21050 = YC6267.;"
electron transport complex protein RnfB; K03616 electron transport complex protein RnfB
|
|
SCNpilot_expt_1000_bf_scaffold_161_2
Arenimonas oryziterrae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(597..1223)
|
electron transport complex RsxE subunit n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B35A32
Uncharacterized protein {ECO:0000313|EMBL:KFN41157.1}; TaxID=1121015 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas oryziterrae DSM 21050 = YC6267.;"
Electron transport complex protein RnfA
|
|
SCNpilot_expt_1000_bf_scaffold_161_3
BJP_IG2103_SUB10_Xanthomonadales_61_45, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(1228..3387)
|
methionyl-tRNA synthetase n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B51EBF
rbh
Tax=BJP_IG2103_SUB10_Xanthomonadales_61_45
|
|
SCNpilot_expt_1000_bf_scaffold_161_4
unknown
|
Not on your lists |
comp(3536..3772)
|
This feature has no annotations |
|
SCNpilot_expt_1000_bf_scaffold_161_5
unknown
|
Not on your lists |
comp(3905..4372)
|
This feature has no annotations |
|
SCNpilot_expt_1000_bf_scaffold_161_6
Arenimonas donghaensis, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
4517..5608
|
Uncharacterized protein {ECO:0000313|EMBL:KFL37393.1}; TaxID=1121014 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas donghaensis DSM 18148 = HO3-R19.;"
Chromosome partitioning ATPase id=2750032 bin=GWF1_Xanthomonadales_69_6 species=Rhodanobacter sp. 115 genus=Rhodanobacter taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
ATPase involved in chromosome partitioning
|
|
SCNpilot_expt_1000_bf_scaffold_161_7
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
5705..6274
|
Deoxycytidine triphosphate deaminase {ECO:0000256|HAMAP-Rule:MF_00146}; Short=dCTP deaminase {ECO:0000256|HAMAP-Rule:MF_00146};; EC=3.5.4.13 {ECO:0000256|HAMAP-Rule:MF_00146};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
deoxycytidine triphosphate deaminase n=1 Tax=Rudaea cellulosilytica RepID=UPI00037072DE
rbh
deoxycytidine triphosphate deaminase
|
|
SCNpilot_expt_1000_bf_scaffold_161_8
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
6393..6797
|
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000372E0E8
Uncharacterized protein {ECO:0000313|EMBL:KGI77323.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_161_9
unknown
|
Not on your lists |
6856..7170
|
This feature has no annotations |
|
SCNpilot_expt_1000_bf_scaffold_161_10
unknown
|
Not on your lists |
7276..8022
|
This feature has no annotations |
|
SCNpilot_expt_1000_bf_scaffold_161_11
unknown
|
Not on your lists |
8249..8965
|
This feature has no annotations |
|
SCNpilot_expt_1000_bf_scaffold_161_12
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(9423..10079)
|
pcp; pyrrolidone-carboxylate peptidase (5-oxoprolyl-peptidase); K01304 pyroglutamyl-peptidase [EC:3.4.19.3] id=5079169 bin=GWF1_Burkholderiales_GWF1_66_17 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
pcp; Pyrrolidone-carboxylate peptidase; K01304 pyroglutamyl-peptidase [EC:3.4.19.3]
Tax=GWE1_Burkholderiales_65_30_curated
|
|
SCNpilot_expt_1000_bf_scaffold_161_13
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(10076..11047)
|
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00036982FE
Uncharacterized protein {ECO:0000313|EMBL:AIF46188.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
conserved membrane protein of unknown function, DUF979
|
|
SCNpilot_expt_1000_bf_scaffold_161_14
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(11044..11724)
|
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000382979C
Membrane protein {ECO:0000313|EMBL:AIF46187.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_161_15
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(11721..12494)
|
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000370314B
rbh
UPF0271 protein HY57_02415 {ECO:0000256|HAMAP-Rule:MF_00691}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
|
|
SCNpilot_expt_1000_bf_scaffold_161_16
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(12482..13459)
|
urea amidolyase-like protein (EC:6.3.4.6)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00035D3F38
Uncharacterized protein {ECO:0000313|EMBL:AIF46185.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
|
|
SCNpilot_expt_1000_bf_scaffold_161_17
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(13456..14172)
|
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00035D3F38
Allophanate hydrolase {ECO:0000313|EMBL:AHX15480.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
allophanate hydrolase subunit 1
|
|
SCNpilot_expt_1000_bf_scaffold_161_18
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(14169..14594)
|
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003604AAF
Uncharacterized protein {ECO:0000313|EMBL:KGI77322.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
histidine triad (HIT) protein
|
|
SCNpilot_expt_1000_bf_scaffold_161_19
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(14591..15262)
|
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034CF8FB
Carboxymethylenebutenolidase {ECO:0000313|EMBL:AHX13833.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
dienelactone hydrolase-like enzyme
|
|
SCNpilot_expt_1000_bf_scaffold_161_20
Oleiagrimonas soli, Oleiagrimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(15488..17653)
|
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003697FD8
Uncharacterized protein {ECO:0000313|EMBL:KGI77321.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
diguanylate cyclase/serine/threonine protein kinase
|
|
SCNpilot_expt_1000_bf_scaffold_161_21
Arenimonas oryziterrae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
18001..19320
|
Ribosomal protein S12 methylthiotransferase RimO {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00083292}; Short=S12 MTTase {ECO:0000256|HAMAP-Rule:MF_01865};; Short=S12 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01865};; EC=2.8.4.4 {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00179441};; Ribosomal protein S12 (aspartate-C(3))-methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01865}; Ribosome maturation factor RimO {ECO:0000256|HAMAP-Rule:MF_01865}; TaxID=1121015 species="Bacteria; Pr
ribosomal protein S12 methylthiotransferase n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B52A75
rbh
ribosomal protein S12 methylthiotransferase RimO
|
|
SCNpilot_expt_1000_bf_scaffold_161_22
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
19332..20162
|
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WLD5_9GAMM
Protein of unknown function (DUF3025)
Uncharacterized protein {ECO:0000313|EMBL:AGG88482.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
|
|
SCNpilot_expt_1000_bf_scaffold_161_23
Xanthomonas albilineans, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(20147..20650)
|
Transcription elongation factor GreB n=1 Tax=Xanthomonas albilineans (strain GPE PC73 / CFBP 7063) RepID=D2UCA7_XANAP
greB; transcription elongation factor greb (transcript cleavage factor greb) protein; K04760 transcription elongation factor GreB
Transcription elongation factor GreB {ECO:0000256|HAMAP-Rule:MF_00930}; Transcript cleavage factor GreB {ECO:0000256|HAMAP-Rule:MF_00930}; TaxID=380358 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas albilineans (strain GPE PC73 / CFBP 7063).;"
|
|
SCNpilot_expt_1000_bf_scaffold_161_24
Lysobacter sp. A03, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
20917..22392
|
rhomboid family membrane protein n=1 Tax=Xanthomonas sp. SHU308 RepID=UPI000374AA68
NODE_6, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ98372.1}; TaxID=1199154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter sp. A03.;"
integral membrane protein
|
|
SCNpilot_expt_1000_bf_scaffold_161_25
Arenimonas oryziterrae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
22688..23596
|
cytochrome C551 n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B668B1
rbh
Uncharacterized protein {ECO:0000313|EMBL:KFN41209.1}; TaxID=1121015 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas oryziterrae DSM 21050 = YC6267.;"
cation diffusion facilitator family transporter
|
|
SCNpilot_expt_1000_bf_scaffold_161_26
unknown
|
Not on your lists |
comp(23766..24494)
|
This feature has no annotations |
|
SCNpilot_expt_1000_bf_scaffold_161_27
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(24618..25118)
|
Starvation-inducible outer membrane lipoprotein n=1 Tax=Rhodanobacter sp. 115 RepID=I4VVL6_9GAMM
Starvation-inducible outer membrane lipoprotein {ECO:0000313|EMBL:EIL91257.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
starvation-inducible outer membrane lipoprotein
|
|
SCNpilot_expt_1000_bf_scaffold_161_28
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria
|
Not on your lists |
comp(25115..25858)
|
silent information regulator protein Sir2; K12410 NAD-dependent deacetylase [EC:3.5.1.-]
NAD-dependent protein deacylase {ECO:0000256|HAMAP-Rule:MF_01121}; EC=3.5.1.- {ECO:0000256|HAMAP-Rule:MF_01121};; Regulatory protein SIR2 homolog {ECO:0000256|HAMAP-Rule:MF_01121}; TaxID=266117 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129).;"
NAD-dependent protein deacylase n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AWC3_RUBXD
|
|
SCNpilot_expt_1000_bf_scaffold_161_29
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
26045..28195
|
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VW37_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL91428.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Peptidase S46
|
|
SCNpilot_expt_1000_bf_scaffold_161_30
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
28449..29375
|
tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783}; EC=2.5.1.75 {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783};; Dimethylallyl diphosphate:tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; Isopentenyl-diphosphate:tRNA isopentenyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034CFF1E
tRNA isopentenyltransferase MiaA
|