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SCNpilot_expt_1000_bf_scaffold_108

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Displaying items 1-30 of 1326 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_108_1
Clavibacter michiganensis, Clavibacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2..5866)
DNA (5865bp) protein (1955aa)
Uncharacterized protein n=1 Tax=Clavibacter michiganensis subsp. nebraskensis NCPPB 2581 RepID=M5B9M7_9MICO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCE75134.1}; TaxID=1097677 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Clavibacter.;" source="Clavibacter michiganensis subsp. nebraskensis NCPPB 2581.;"
SCNpilot_expt_1000_bf_scaffold_108_2
Microbacterium sp. TS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5999..7102
DNA (1104bp) protein (368aa)
Hemin ABC transporter substrate-binding protein n=1 Tax=Microbacterium sp. TS-1 RepID=U2YMR1_9MICO
Hemin ABC transporter substrate-binding protein {ECO:0000313|EMBL:GAD34349.1}; TaxID=1344956 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. TS-1.;"
hmuT; hemin-binding periplasmic protein; K02016 iron complex transport system substrate-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_108_3
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7235..8743
DNA (1509bp) protein (503aa)
putative HNH endonuclease id=7719585 bin=CNBR_ACT species=Micromonospora lupini genus=Micromonospora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
Uncharacterized protein {ECO:0000313|EMBL:KJL17329.1}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_108_4
BJP_08E140C01_10KDA_Microbacterium_68_10, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

8776..9837
DNA (1062bp) protein (354aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI00031A57F7 rbh
hypothetical protein rbh
Tax=BJP_08E140C01_10KDA_Microbacterium_68_10
SCNpilot_expt_1000_bf_scaffold_108_5
Microbacterium maritypicum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9834..10817
DNA (984bp) protein (328aa)
biotin carboxylase; K01955 carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] rbh
Uncharacterized protein n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KTQ1_9MICO rbh
Uncharacterized protein {ECO:0000313|EMBL:EQM82391.1}; TaxID=1333857 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium maritypicum MF109.;"
SCNpilot_expt_1000_bf_scaffold_108_6
Microbacterium sp. UCD-TDU, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10823..11533
DNA (711bp) protein (237aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI0003108A59 rbh
Histidinol phosphatase {ECO:0000313|EMBL:EYT58270.1}; TaxID=1247714 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. UCD-TDU.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_108_7
Microbacterium maritypicum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11530..13029
DNA (1500bp) protein (500aa)
Uncharacterized protein n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KQU0_9MICO rbh
Uncharacterized protein {ECO:0000313|EMBL:EQM82389.1}; TaxID=1333857 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium maritypicum MF109.;"
glycosyl transferase rbh
SCNpilot_expt_1000_bf_scaffold_108_8
unknown

Not on your lists

13026..13175
DNA (150bp) protein (50aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_108_9
Microbacterium sp. UCD-TDU, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13172..13522
DNA (351bp) protein (117aa)
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI000347CCC0
Uncharacterized protein {ECO:0000313|EMBL:EYT58272.1}; TaxID=1247714 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. UCD-TDU.;"
response regulator receiver protein
SCNpilot_expt_1000_bf_scaffold_108_10
Microbacterium sp. SA39, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13519..15261
DNA (1743bp) protein (581aa)
Alkaline phosphatase synthesis sensor protein PhoR {ECO:0000313|EMBL:KJQ55032.1}; EC=2.7.13.3 {ECO:0000313|EMBL:KJQ55032.1};; TaxID=1263625 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SA39.;"
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI000304C200 rbh
signal transduction histidine kinase
SCNpilot_expt_1000_bf_scaffold_108_11
Brachybacterium phenoliresistens, Brachybacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15281..16171)
DNA (891bp) protein (297aa)
aldo/keto reductase; K00064 D-threo-aldose 1-dehydrogenase [EC:1.1.1.122]
Aldo/keto reductase id=7720305 bin=CNBR_ACT species=Streptomyces bingchenggensis genus=Streptomyces taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
Oxidoreductase {ECO:0000313|EMBL:EWS81420.1}; TaxID=396014 species="Bacteria; Actinobacteria; Micrococcales; Dermabacteraceae; Brachybacterium.;" source="Brachybacterium phenoliresistens.;"
SCNpilot_expt_1000_bf_scaffold_108_12
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16188..16799)
DNA (612bp) protein (204aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI0002D94936
GDSL-like Lipase/Acylhydrolase {ECO:0000313|EMBL:KJL21973.1}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
lipase/acylhydrolase family protein
SCNpilot_expt_1000_bf_scaffold_108_13
Kocuria polaris, Kocuria, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16844..17461
DNA (618bp) protein (206aa)
hypothetical protein n=1 Tax=Kocuria sp. UCD-OTCP RepID=UPI00037B526F
Xylan esterase {ECO:0000313|EMBL:KHD98395.1}; TaxID=136273 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Kocuria.;" source="Kocuria polaris.;"
endo-1,4-beta-xylanase B
SCNpilot_expt_1000_bf_scaffold_108_14
Aeromicrobium marinum, Aeromicrobium, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17465..19486)
DNA (2022bp) protein (674aa)
UPI0003C7ED39 related cluster n=1 Tax=unknown RepID=UPI0003C7ED39
Acyltransferase {ECO:0000313|EMBL:EFQ81782.1}; TaxID=585531 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Aeromicrobium.;" source="Aeromicrobium marinum DSM 15272.;"
acyltransferase 3
SCNpilot_expt_1000_bf_scaffold_108_15
marine actinobacterium PHSC20C1, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19536..20648)
DNA (1113bp) protein (371aa)
Acyl-CoA dehydrogenase id=7720331 bin=CNBR_ACT species=unknown genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:EAR26289.1}; TaxID=312284 species="Bacteria; Actinobacteria.;" source="marine actinobacterium PHSC20C1.;"
acyl-CoA dehydrogenase
SCNpilot_expt_1000_bf_scaffold_108_16
marine actinobacterium PHSC20C1, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20683..21705)
DNA (1023bp) protein (341aa)
GFO/IDH/MOCA family oxidoreductase id=7720334 bin=CNBR_ACT species=Salinibacterium sp. PAMC 21357 genus=Salinibacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
GFO/IDH/MOCA family oxidoreductase {ECO:0000313|EMBL:EAR26090.1}; TaxID=312284 species="Bacteria; Actinobacteria.;" source="marine actinobacterium PHSC20C1.;"
yulF; GFO/IDH/MOCA family oxidoreductase
SCNpilot_expt_1000_bf_scaffold_108_17
Clavibacter michiganensis, Clavibacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21726..22952)
DNA (1227bp) protein (409aa)
ornithine aminotransferase; K00819 ornithine--oxo-acid transaminase [EC:2.6.1.13]
Ornithine--oxo-acid aminotransferase {ECO:0000313|EMBL:AJW78213.1}; EC=2.6.1.13 {ECO:0000313|EMBL:AJW78213.1};; TaxID=33014 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Clavibacter.;" source="Clavibacter michiganensis subsp. insidiosus.;"
Ornithine aminotransferase id=7720341 bin=CNBR_ACT species=Clavibacter michiganensis genus=Clavibacter taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
SCNpilot_expt_1000_bf_scaffold_108_18
Frigoribacterium sp. MEB024, Frigoribacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22949..23797)
DNA (849bp) protein (283aa)
Uncharacterized protein id=7720342 bin=CNBR_ACT species=Clavibacter michiganensis genus=Clavibacter taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
Contig_7, whole genome shotgun sequence {ECO:0000313|EMBL:KIU04035.1}; TaxID=1589899 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Frigoribacterium.;" source="Frigoribacterium sp. MEB024.;"
amidinotransferase
SCNpilot_expt_1000_bf_scaffold_108_19
Clavibacter michiganensis, Clavibacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23903..24340
DNA (438bp) protein (146aa)
Transcriptional regulator, AsnC family id=7720343 bin=CNBR_ACT species=Clavibacter michiganensis genus=Clavibacter taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
transcriptional regulator, AsnC family
Putative transcriptional regulator, AsnC family {ECO:0000313|EMBL:CAN00655.1}; TaxID=443906 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Clavibacter.;" source="Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382).;"
SCNpilot_expt_1000_bf_scaffold_108_20
unknown

Not on your lists

24402..25337
DNA (936bp) protein (312aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_108_21
Microbacterium laevaniformans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25334..25699
DNA (366bp) protein (122aa)
Uncharacterized protein n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3A3A9_9MICO
Regulatory protein GntR HTH {ECO:0000313|EMBL:EIC08748.1}; TaxID=1160710 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium laevaniformans OR221.;"
regulatory protein GntR
SCNpilot_expt_1000_bf_scaffold_108_22
Arthrobacter crystallopoietes, Arthrobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25801..29229)
DNA (3429bp) protein (1143aa)
delta-1-pyrroline-5-carboxylate dehydrogenase/L-proline dehydrogenase (EC:1.5.1.12 1.5.99.8); K13821 proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.99.8 1.5.1.12]
Proline dehydrogenase id=7720346 bin=CNBR_ACT species=marine actinobacterium PHSC20C1 genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
Delta-1-pyrroline-5-carboxylate dehydrogenase/L-proline dehydrogenase {ECO:0000313|EMBL:EMY33231.1}; TaxID=1246476 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arthrobacter crystallopoietes BAB-32.;"
SCNpilot_expt_1000_bf_scaffold_108_23
Amycolatopsis rifamycinica, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29303..29899)
DNA (597bp) protein (199aa)
Putative reductase n=1 Tax=Symbiobacterium thermophilum (strain T / IAM 14863) RepID=Q67QV1_SYMTH
Uncharacterized protein {ECO:0000313|EMBL:KDN21755.1}; TaxID=287986 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis rifamycinica.;"
reductase
SCNpilot_expt_1000_bf_scaffold_108_24
Frigoribacterium sp. MEB024, Frigoribacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29988..30497
DNA (510bp) protein (170aa)
Contig_7, whole genome shotgun sequence {ECO:0000313|EMBL:KIU04026.1}; TaxID=1589899 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Frigoribacterium.;" source="Frigoribacterium sp. MEB024.;"
Transcriptional regulator id=7720349 bin=CNBR_ACT species=Saccharomonospora cyanea genus=Saccharomonospora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
MarR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_108_25
Actinotalea ferrariae, Actinotalea, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

30507..31778
DNA (1272bp) protein (424aa)
signal transduction histidine kinase n=1 Tax=Salinibacterium sp. PAMC 21357 RepID=UPI0002898553 rbh
Histidine kinase {ECO:0000313|EMBL:EYR62775.1}; TaxID=948458 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Actinotalea.;" source="Actinotalea ferrariae CF5-4.;"
histidine kinase
SCNpilot_expt_1000_bf_scaffold_108_26
Clavibacter michiganensis, Clavibacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

31778..32428
DNA (651bp) protein (217aa)
Putative two-component system response regulator n=1 Tax=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) RepID=A5CMZ0_CLAM3
putative two-component system response regulator
Putative two-component system response regulator {ECO:0000313|EMBL:CAN00426.1}; TaxID=443906 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Clavibacter.;" source="Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382).;"
SCNpilot_expt_1000_bf_scaffold_108_27
BJP_08E140C01_10KDA_Microbacterium_68_10, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

32514..33398
DNA (885bp) protein (295aa)
ABC transporter ATP-binding protein n=1 Tax=Microbacterium barkeri RepID=UPI0002F92202
ABC transporter ATPase; K01990 ABC-2 type transport system ATP-binding protein
Tax=BJP_08E140C01_10KDA_Microbacterium_68_10
SCNpilot_expt_1000_bf_scaffold_108_28
BJP_08E140C01_10KDA_Microbacterium_68_10, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

33395..34489
DNA (1095bp) protein (365aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI00030D3262
transport protein; K01992 ABC-2 type transport system permease protein rbh
Tax=BJP_08E140C01_10KDA_Microbacterium_68_10
SCNpilot_expt_1000_bf_scaffold_108_29
Mycobacterium phlei, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

34490..35620
DNA (1131bp) protein (377aa)
threonine aldolase; K01620 threonine aldolase [EC:4.1.2.5] rbh
Threonine aldolase n=1 Tax=Mycobacterium phlei RIVM601174 RepID=I0S2C7_MYCPH rbh
Threonine aldolase {ECO:0000313|EMBL:EID17530.1}; TaxID=1150599 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium phlei RIVM601174.;"
SCNpilot_expt_1000_bf_scaffold_108_30
marine actinobacterium PHSC20C1, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

35780..37468
DNA (1689bp) protein (563aa)
Acyl-CoA synthase {ECO:0000313|EMBL:EAR23807.1}; EC=2.3.1.86 {ECO:0000313|EMBL:EAR23807.1};; TaxID=312284 species="Bacteria; Actinobacteria.;" source="marine actinobacterium PHSC20C1.;"
long-chain-fatty-acid--CoA ligase (EC:6.2.1.3); K01897 long-chain acyl-CoA synthetase [EC:6.2.1.3]
long-chain fatty acid--CoA ligase n=1 Tax=Agromyces subbeticus RepID=UPI0003B60F98
Displaying items 1-30 of 1326 in total

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