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SCNpilot_expt_1000_bf_scaffold_233

Search features with annotation key words

Displaying items 1-30 of 218 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_233_1
Leifsonia xyli, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

522..1487
DNA (966bp) protein (322aa)
hypothetical protein n=1 Tax=Agromyces italicus RepID=UPI0003B3EB7E
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AAT88215.1}; TaxID=281090 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia xyli subsp. xyli (strain CTCB07).;"
SCNpilot_expt_1000_bf_scaffold_233_2
Microbacterium sp. C448, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1484..2500
DNA (1017bp) protein (339aa)
haloacid dehalogenase n=1 Tax=Microbacterium sp. 292MF RepID=UPI0003753DFE
Predicted sugar phosphatase of the HAD superfamily {ECO:0000313|EMBL:CDK00440.1}; TaxID=1177594 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. C448.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_233_3
unknown

Not on your lists

2497..2673
DNA (177bp) protein (59aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_233_4
Microbacterium ginsengisoli, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2666..3481
DNA (816bp) protein (272aa)
16S/23S rRNA (Cytidine-2'-O)-methyltransferase TlyA {ECO:0000313|EMBL:KJL36394.1}; EC=2.1.1.226 {ECO:0000313|EMBL:KJL36394.1};; TaxID=400772 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium ginsengisoli.;"
tlyA; hemolysin; K06442 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
hypothetical protein n=1 Tax=Cryocola sp. 340MFSha3.1 RepID=UPI00036991C3
SCNpilot_expt_1000_bf_scaffold_233_5
Sanguibacter keddieii, Sanguibacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3486..4163)
DNA (678bp) protein (226aa)
Uncharacterized protein n=1 Tax=Sanguibacter keddieii (strain ATCC 51767 / DSM 10542 / NCFB 3025 / ST-74) RepID=D1BIT0_SANKS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACZ20122.1}; TaxID=446469 species="Bacteria; Actinobacteria; Micrococcales; Sanguibacteraceae; Sanguibacter.;" source="Sanguibacter keddieii (strain ATCC 51767 / DSM 10542 / NCFB 3025 /; ST-74).;"
SCNpilot_expt_1000_bf_scaffold_233_6
marine actinobacterium PHSC20C1, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4303..5247
DNA (945bp) protein (315aa)
ppnK; inorganic polyphosphate/ATP-NAD kinase (EC:2.7.1.23); K00858 NAD+ kinase [EC:2.7.1.23] id=7721273 bin=CNBR_ACT species=unknown genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037468}; EC=2.7.1.23 {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037533};; ATP-dependent NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361}; TaxID=312284 species="Bacteria; Actinobacteria.;" source="marine actinobacterium PHSC20C1.;"
inorganic polyphosphate/ATP-NAD kinase
SCNpilot_expt_1000_bf_scaffold_233_7
Leifsonia xyli, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5244..6944
DNA (1701bp) protein (567aa)
DNA repair protein RecN n=1 Tax=Curtobacterium ginsengisoli RepID=UPI0003B3D9C5
DNA repair protein RecN
DNA repair protein RecN {ECO:0000256|PIRNR:PIRNR003128}; Recombination protein N {ECO:0000256|PIRNR:PIRNR003128}; TaxID=1389489 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia xyli subsp. cynodontis DSM 46306.;"
SCNpilot_expt_1000_bf_scaffold_233_8
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6992..8737
DNA (1746bp) protein (582aa)
pyrG; CTP synthetase (EC:6.3.4.2); K01937 CTP synthase [EC:6.3.4.2] id=7721270 bin=CNBR_ACT species=unknown genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
CTP synthase {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037303}; EC=6.3.4.2 {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037401};; CTP synthetase {ECO:0000256|HAMAP-Rule:MF_01227}; UTP--ammonia ligase {ECO:0000256|HAMAP-Rule:MF_01227}; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
CTP synthetase
SCNpilot_expt_1000_bf_scaffold_233_9
Clavibacter michiganensis, Clavibacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8742..9329
DNA (588bp) protein (196aa)
nudix hydrolase; K01515 ADP-ribose pyrophosphatase [EC:3.6.1.13]
Putative nudix hydrolase n=1 Tax=Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / DSM 20744 / JCM 9667 / LMG 2889 / C-1) RepID=B0RHE9_CLAMS
Putative nudix hydrolase {ECO:0000313|EMBL:CAQ01366.1}; TaxID=31964 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Clavibacter.;" source="Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / DSM; 20744 / JCM 9667 / LMG 2889 / C-1) (Corynebacterium sepedonicum).;"
SCNpilot_expt_1000_bf_scaffold_233_10
Clavibacter michiganensis, Clavibacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9316..10314
DNA (999bp) protein (333aa)
Tyrosine recombinase XerD n=1 Tax=Leifsonia aquatica ATCC 14665 RepID=U2T570_LEIAQ rbh
Tyrosine recombinase XerC {ECO:0000256|HAMAP-Rule:MF_01808}; TaxID=1291006 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Clavibacter.;" source="Clavibacter cf. michiganensis LMG 26808.;"
xerD; site-specific tyrosine recombinase XerD; K04763 integrase/recombinase XerD rbh
SCNpilot_expt_1000_bf_scaffold_233_11
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10433..11326
DNA (894bp) protein (298aa)
chromosome partitioning ATPase n=1 Tax=Humibacter albus RepID=UPI0003B41C5B rbh
Putative sporulation initiation inhibitor protein Soj {ECO:0000313|EMBL:ERK69863.1}; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
parA; chromosome partitioning protein; K03496 chromosome partitioning protein rbh
SCNpilot_expt_1000_bf_scaffold_233_12
Leifsonia aquatica, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11362..12189
DNA (828bp) protein (276aa)
chromosome segregation protein ScpA n=1 Tax=Agromyces subbeticus RepID=UPI0003B47086
ScpA/B protein {ECO:0000313|EMBL:ERK69864.1}; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_233_13
Clavibacter michiganensis, Clavibacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12179..12769
DNA (591bp) protein (197aa)
putative transcriptional regulator; K06024 segregation and condensation protein B id=7721265 bin=CNBR_ACT species=unknown genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
chromosome condensation and segregation protein B
Segregation and condensation protein B {ECO:0000256|SAAS:SAAS00086417}; TaxID=1097677 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Clavibacter.;" source="Clavibacter michiganensis subsp. nebraskensis NCPPB 2581.;"
SCNpilot_expt_1000_bf_scaffold_233_14
Microbacterium foliorum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12766..13566
DNA (801bp) protein (267aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=104336 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium foliorum.;"
rsuA; RNA pseudouridine synthase; K06183 16S rRNA pseudouridine516 synthase [EC:5.4.99.19]
Pseudouridine synthase n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KBW5_9MICO
SCNpilot_expt_1000_bf_scaffold_233_15
Frigoribacterium sp. MEB024, Frigoribacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13563..14654
DNA (1092bp) protein (364aa)
tyrA; prephenate dehydrogenase (EC:1.3.1.12); K04517 prephenate dehydrogenase [EC:1.3.1.12] id=7721263 bin=CNBR_ACT species=marine actinobacterium PHSC20C1 genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
prephenate dehydrogenase; K04517 prephenate dehydrogenase [EC:1.3.1.12]
Contig_49, whole genome shotgun sequence {ECO:0000313|EMBL:KIU02632.1}; TaxID=1589899 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Frigoribacterium.;" source="Frigoribacterium sp. MEB024.;"
SCNpilot_expt_1000_bf_scaffold_233_16
Clavibacter michiganensis, Clavibacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14651..15334
DNA (684bp) protein (228aa)
cmkA; putative cytidylate kinase (EC:2.7.4.14); K00945 cytidylate kinase [EC:2.7.4.14]
Cytidylate kinase {ECO:0000256|HAMAP-Rule:MF_00238}; Short=CK {ECO:0000256|HAMAP-Rule:MF_00238};; EC=2.7.4.25 {ECO:0000256|HAMAP-Rule:MF_00238};; Cytidine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00238}; TaxID=443906 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Clavibacter.;" source="Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382).;"
Cytidylate kinase n=1 Tax=Clavibacter michiganensis subsp. nebraskensis NCPPB 2581 RepID=M5BDJ2_9MICO
SCNpilot_expt_1000_bf_scaffold_233_17
Frigoribacterium sp. MEB024, Frigoribacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15346..16902
DNA (1557bp) protein (519aa)
GTP-binding protein Der n=1 Tax=Corynebacterium-like bacterium B27 RepID=UPI0003B704F1 rbh
GTPase Der {ECO:0000256|HAMAP-Rule:MF_00195, ECO:0000256|RuleBase:RU004481}; GTP-binding protein EngA {ECO:0000256|HAMAP-Rule:MF_00195}; TaxID=1589899 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Frigoribacterium.;" source="Frigoribacterium sp. MEB024.;"
GTP-binding protein EngA rbh
SCNpilot_expt_1000_bf_scaffold_233_18
Tetrasphaera japonica, Tetrasphaera, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17098..18582)
DNA (1485bp) protein (495aa)
Putative drug resistance transporter n=1 Tax=Microlunatus phosphovorus (strain ATCC 700054 / DSM 10555 / JCM 9379 / NBRC 101784 / NCIMB 13414 / VKM Ac-1990 / NM-1) RepID=F5XN33_MICPN rbh
Drug resistance transporter, EmrB/QacA subfamily {ECO:0000313|EMBL:CCH76095.1}; TaxID=1194083 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Tetrasphaera.;" source="Tetrasphaera japonica T1-X7.;"
putative drug resistance transporter rbh
SCNpilot_expt_1000_bf_scaffold_233_19
Gordonia polyisoprenivorans, Gordonia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18654..19235
DNA (582bp) protein (194aa)
Putative TetR family transcriptional regulator n=1 Tax=Gordonia polyisoprenivorans NBRC 16320 RepID=H0RKJ8_9ACTO
Putative TetR family transcriptional regulator {ECO:0000313|EMBL:GAB25599.1}; TaxID=1077976 species="Bacteria; Actinobacteria; Corynebacteriales; Gordoniaceae; Gordonia.;" source="Gordonia polyisoprenivorans NBRC 16320 = JCM 10675.;"
TetR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_233_20
Microbacterium mangrovi, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19299..20252
DNA (954bp) protein (318aa)
L-lactate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00488}; Short=L-LDH {ECO:0000256|HAMAP-Rule:MF_00488};; EC=1.1.1.27 {ECO:0000256|HAMAP-Rule:MF_00488};; TaxID=1348253 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium mangrovi.;"
malate/lactate dehydrogenase; K00016 L-lactate dehydrogenase [EC:1.1.1.27]
lactate dehydrogenase n=1 Tax=Microbacterium yannicii RepID=UPI00030D621C
SCNpilot_expt_1000_bf_scaffold_233_21
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20262..20834)
DNA (573bp) protein (191aa)
HhH-GPD superfamily base excision DNA repair protein {ECO:0000313|EMBL:KJL30379.1}; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
HhH-GPD family protein id=7721251 bin=CNBR_ACT species=Microbacterium laevaniformans genus=Microbacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
HhH-GPD family protein
SCNpilot_expt_1000_bf_scaffold_233_22
Cellulomonas fimi, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20845..23205)
DNA (2361bp) protein (787aa)
ABC transporter n=1 Tax=Leifsonia sp. 109 RepID=UPI000375E8D8 rbh
ABC transporter related protein {ECO:0000313|EMBL:AEE44433.1}; TaxID=590998 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas fimi (strain ATCC 484 / DSM 20113 / JCM 1341 / NBRC 15513; / NCIMB 8980 / NCTC 7547).;"
ABC transporter-like protein
SCNpilot_expt_1000_bf_scaffold_233_23
Microbacterium sp. TS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23314..24480
DNA (1167bp) protein (389aa)
Nitrate/sulfonate/bicarbonate ABC transporter substrate-binding protein n=1 Tax=Microbacterium sp. TS-1 RepID=U2XMS1_9MICO rbh
Nitrate/sulfonate/bicarbonate ABC transporter substrate-binding protein {ECO:0000313|EMBL:GAD34370.1}; TaxID=1344956 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. TS-1.;"
NMT1/THI5 like domain-containing protein
SCNpilot_expt_1000_bf_scaffold_233_24
Microbacterium sp. TS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24482..25309
DNA (828bp) protein (276aa)
Nitrate/sulfonate/bicarbonate ABC transporter ATP-binding protein n=1 Tax=Microbacterium sp. TS-1 RepID=U2XA33_9MICO rbh
Nitrate/sulfonate/bicarbonate ABC transporter ATP-binding protein {ECO:0000313|EMBL:GAD34371.1}; TaxID=1344956 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. TS-1.;"
ABC transporter; K02049 NitT/TauT family transport system ATP-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_233_25
Microbacterium sp. TS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25311..26135
DNA (825bp) protein (275aa)
Nitrate/sulfonate/bicarbonate ABC transporter permease protein n=1 Tax=Microbacterium sp. TS-1 RepID=U2XN85_9MICO rbh
Nitrate/sulfonate/bicarbonate ABC transporter permease protein {ECO:0000313|EMBL:GAD34372.1}; TaxID=1344956 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. TS-1.;"
binding-protein-dependent transport system inner membrane protein
SCNpilot_expt_1000_bf_scaffold_233_26
Microbacterium sp. TS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26658..27011
DNA (354bp) protein (118aa)
Nitrate/sulfonate/bicarbonate ABC transporter permease protein n=1 Tax=Microbacterium sp. TS-1 RepID=U2YUT2_9MICO
Nitrate/sulfonate/bicarbonate ABC transporter permease protein {ECO:0000313|EMBL:GAD34373.1}; TaxID=1344956 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. TS-1.;"
ABC transporter permease
SCNpilot_expt_1000_bf_scaffold_233_27
Cryobacterium roopkundense, Cryobacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27095..27535
DNA (441bp) protein (147aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI00030F8127
Uncharacterized protein {ECO:0000313|EMBL:KGJ71933.1}; TaxID=1001240 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Cryobacterium.;" source="Cryobacterium roopkundense.;"
SCNpilot_expt_1000_bf_scaffold_233_28
Frigoribacterium sp. MEB024, Frigoribacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27552..28076)
DNA (525bp) protein (175aa)
Adenine phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00004, ECO:0000256|SAAS:SAAS00084274}; Short=APRT {ECO:0000256|HAMAP-Rule:MF_00004};; EC=2.4.2.7 {ECO:0000256|HAMAP-Rule:MF_00004, ECO:0000256|SAAS:SAAS00084255};; TaxID=1589899 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Frigoribacterium.;" source="Frigoribacterium sp. MEB024.;"
aptA; adenine phosphoribosyltransferase (EC:2.4.2.7); K00759 adenine phosphoribosyltransferase [EC:2.4.2.7]
adenine phosphoribosyltransferase n=1 Tax=Agromyces italicus RepID=UPI0003B3F752
SCNpilot_expt_1000_bf_scaffold_233_29
Bacillus sp. EGD-AK10, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(28114..29301)
DNA (1188bp) protein (396aa)
putative kynureninase; K01556 kynureninase [EC:3.7.1.3] rbh
Kynureninase {ECO:0000256|HAMAP-Rule:MF_01970, ECO:0000256|PIRNR:PIRNR038800}; EC=3.7.1.3 {ECO:0000256|HAMAP-Rule:MF_01970, ECO:0000256|PIRNR:PIRNR038800};; L-kynurenine hydrolase {ECO:0000256|HAMAP-Rule:MF_01970}; TaxID=1386080 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus sp. EGD-AK10.;"
Kynureninase id=7720333 bin=CNBR_ACT species=Actinoplanes sp. genus=Actinoplanes taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
SCNpilot_expt_1000_bf_scaffold_233_30
Microbacterium ginsengisoli, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29340..29582
DNA (243bp) protein (81aa)
hypothetical protein n=1 Tax=Microbacterium sp. 11MF RepID=UPI00037D611A
Uncharacterized protein {ECO:0000313|EMBL:KJL36914.1}; TaxID=400772 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium ginsengisoli.;"
hypothetical protein
Displaying items 1-30 of 218 in total

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