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SCNpilot_expt_1000_bf_scaffold_144

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Displaying items 1-30 of 668 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_144_1
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

132..803
DNA (672bp) protein (224aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IIS8_9SPHN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:GAO39275.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
SCNpilot_expt_1000_bf_scaffold_144_2
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(931..1611)
DNA (681bp) protein (227aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IP93_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK68074.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_144_3
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1644..2369)
DNA (726bp) protein (242aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IP94_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK68075.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_144_4
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3107..3619)
DNA (513bp) protein (171aa)
Putative CarD family transcriptional regulator n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IP95_9SPHN
putative CarD family transcriptional regulator; K07736 CarD family transcriptional regulator
Putative CarD family transcriptional regulator {ECO:0000313|EMBL:BAK68076.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_144_5
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3915..4253)
DNA (339bp) protein (113aa)
Ferredoxin n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IP96_9SPHN
ferredoxin; K05524 ferredoxin
Ferredoxin {ECO:0000313|EMBL:BAK68077.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_144_6
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4341..4664)
DNA (324bp) protein (108aa)
Putative heat shock protein 15 n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IP97_9SPHN
hslR; putative heat shock protein 15; K04762 ribosome-associated heat shock protein Hsp15
Putative heat shock protein 15 {ECO:0000313|EMBL:BAK68078.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_144_7
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4689..7406)
DNA (2718bp) protein (906aa)
Putative helicase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IP98_9SPHN
putative helicase
Putative helicase {ECO:0000313|EMBL:BAK68079.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_144_8
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7641..9191
DNA (1551bp) protein (517aa)
Peptidase M23B family protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IP99_9SPHN
peptidase M23B family protein
Peptidase M23B family protein {ECO:0000313|EMBL:BAK68080.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_144_9
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9465..11027)
DNA (1563bp) protein (521aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPA2_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK68083.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_144_10
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11557..12969)
DNA (1413bp) protein (471aa)
Hypothetical membrane protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPA3_9SPHN
hypothetical protein
Hypothetical membrane protein {ECO:0000313|EMBL:BAK68084.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_144_11
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13021..14469)
DNA (1449bp) protein (483aa)
Putative glucosyltransferase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPA4_9SPHN rbh
putative glucosyltransferase rbh
Putative glucosyltransferase {ECO:0000313|EMBL:BAK68085.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_144_12
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14498..16132)
DNA (1635bp) protein (545aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPA5_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK68086.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_144_13
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16304..16924
DNA (621bp) protein (207aa)
Putative transporter n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPA6_9SPHN rbh
putative transporter; K01991 polysaccharide export outer membrane protein rbh
Putative transporter {ECO:0000313|EMBL:BAK68087.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_144_14
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16921..18123
DNA (1203bp) protein (401aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPA7_9SPHN rbh
hypothetical protein rbh
Putative uncharacterized protein {ECO:0000313|EMBL:BAK68088.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_144_15
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18123..19646
DNA (1524bp) protein (508aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPA8_9SPHN rbh
hypothetical protein rbh
Putative uncharacterized protein {ECO:0000313|EMBL:BAK68089.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_144_16
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19673..20479
DNA (807bp) protein (269aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPA9_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK68090.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_144_17
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20864..21934)
DNA (1071bp) protein (357aa)
rmlB; dTDP-glucose 4,6-dehydratase; K01710 dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] rbh
dTDP-glucose 4,6-dehydratase {ECO:0000256|RuleBase:RU004473}; EC=4.2.1.46 {ECO:0000256|RuleBase:RU004473};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
dTDP-glucose 4,6-dehydratase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPB0_9SPHN rbh
SCNpilot_expt_1000_bf_scaffold_144_18
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21927..22793)
DNA (867bp) protein (289aa)
rmlD; dTDP-4-dehydrorhamnose reductase; K00067 dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133] rbh
dTDP-4-dehydrorhamnose reductase {ECO:0000313|EMBL:BAK68092.1}; EC=1.1.1.133 {ECO:0000313|EMBL:BAK68092.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
dTDP-4-dehydrorhamnose reductase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPB1_9SPHN rbh
SCNpilot_expt_1000_bf_scaffold_144_19
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22790..23335)
DNA (546bp) protein (182aa)
rmlC; dTDP-4-dehydrorhamnose 3,5-epimerase; K01790 dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13]
dTDP-4-dehydrorhamnose 3,5-epimerase {ECO:0000313|EMBL:BAK68093.1}; EC=5.1.3.13 {ECO:0000313|EMBL:BAK68093.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
dTDP-4-dehydrorhamnose 3,5-epimerase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPB2_9SPHN
SCNpilot_expt_1000_bf_scaffold_144_20
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23332..24210)
DNA (879bp) protein (293aa)
rmlA; glucose-1-phosphate thymidylyltransferase; K00973 glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] rbh
Glucose-1-phosphate thymidylyltransferase {ECO:0000256|RuleBase:RU003706}; EC=2.7.7.24 {ECO:0000256|RuleBase:RU003706};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Glucose-1-phosphate thymidylyltransferase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPB3_9SPHN rbh
SCNpilot_expt_1000_bf_scaffold_144_21
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24452..24709
DNA (258bp) protein (86aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPB4_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK68095.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_144_22
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24809..26110
DNA (1302bp) protein (434aa)
UDP-glucose 6-dehydrogenase; K00012 UDPglucose 6-dehydrogenase [EC:1.1.1.22]
UDP-glucose 6-dehydrogenase {ECO:0000313|EMBL:BAK68096.1}; EC=1.1.1.22 {ECO:0000313|EMBL:BAK68096.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
UDP-glucose 6-dehydrogenase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPB5_9SPHN
SCNpilot_expt_1000_bf_scaffold_144_23
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26107..27096
DNA (990bp) protein (330aa)
putative NAD-dependent epimerase/dehydratase; K08679 UDP-glucuronate 4-epimerase [EC:5.1.3.6]
NAD dependent epimerase/dehydratase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B71BAE
Putative NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:BAK68097.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_144_24
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27148..28032
DNA (885bp) protein (295aa)
UTP-glucose-1-phosphate uridylyltransferase; K00963 UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
UTP-glucose-1-phosphate uridylyltransferase {ECO:0000313|EMBL:BAK68098.1}; EC=2.7.7.9 {ECO:0000313|EMBL:BAK68098.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
UTP-glucose-1-phosphate uridylyltransferase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPB7_9SPHN
SCNpilot_expt_1000_bf_scaffold_144_25
Roseobacter denitrificans, Roseobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28328..29257
DNA (930bp) protein (310aa)
Uncharacterized protein n=1 Tax=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) RepID=Q07GE5_ROSDO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABI93454.1}; TaxID=375451 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseobacter.;" source="Roseobacter denitrificans (strain ATCC 33942 / OCh 114) (Erythrobacter; sp. (strain OCh 114)) (Roseobacter denitrificans).;"
SCNpilot_expt_1000_bf_scaffold_144_26
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29575..30432)
DNA (858bp) protein (286aa)
Ubiquinol-cytochrome c reductase cytochrome c1 subunit {ECO:0000313|EMBL:BAK68101.1}; EC=1.10.2.2 {ECO:0000313|EMBL:BAK68101.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Ubiquinol-cytochrome c reductase cytochrome c1 subunit n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPC0_9SPHN
petC; ubiquinol-cytochrome c reductase cytochrome c1 subunit; K00413 ubiquinol-cytochrome c reductase cytochrome c1 subunit
SCNpilot_expt_1000_bf_scaffold_144_27
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30445..31770)
DNA (1326bp) protein (442aa)
Cytochrome b n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPC1_9SPHN
petB; ubiquinol-cytochrome c reductase cytochrome b subunit; K00412 ubiquinol-cytochrome c reductase cytochrome b subunit
Cytochrome b {ECO:0000256|RuleBase:RU003385}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_144_28
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31782..32348)
DNA (567bp) protein (189aa)
petA; ubiquinol-cytochrome c reductase iron-sulfur subunit; K00411 ubiquinol-cytochrome c reductase iron-sulfur subunit [EC:1.10.2.2] rbh
Ubiquinol-cytochrome c reductase iron-sulfur subunit {ECO:0000256|RuleBase:RU004494}; EC=1.10.2.2 {ECO:0000256|RuleBase:RU004494};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Ubiquinol-cytochrome c reductase iron-sulfur subunit n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPC2_9SPHN rbh
SCNpilot_expt_1000_bf_scaffold_144_29
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32656..33114
DNA (459bp) protein (153aa)
putative RNA methyltransferase; K03216 tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
tRNA (cytidine(34)-2'-O)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01885}; EC=2.1.1.207 {ECO:0000256|HAMAP-Rule:MF_01885};; tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL {ECO:0000256|HAMAP-Rule:MF_01885}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
tRNA (cytidine(34)-2'-O)-methyltransferase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPC3_9SPHN
SCNpilot_expt_1000_bf_scaffold_144_30
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33206..34063
DNA (858bp) protein (286aa)
hemF; coproporphyrinogen III oxidase; K00228 coproporphyrinogen III oxidase [EC:1.3.3.3]
Coproporphyrinogen oxidase {ECO:0000256|SAAS:SAAS00122066}; EC=1.3.3.3 {ECO:0000256|SAAS:SAAS00122066};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Coproporphyrinogen III oxidase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IPC4_9SPHN
Displaying items 1-30 of 668 in total

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