name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
SCNpilot_expt_1000_bf_scaffold_234_1
Sphingobium lactosutens, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(53..907)
|
Uncharacterized protein n=1 Tax=Sphingobium lactosutens DS20 RepID=T0HJY2_9SPHN
rbh
Uncharacterized protein {ECO:0000313|EMBL:EQB16661.1}; TaxID=1331060 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lactosutens DS20.;"
putative antirestriction protein
|
|
SCNpilot_expt_1000_bf_scaffold_234_2
Sphingobium herbicidovorans, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(1150..1662)
|
Uncharacterized protein n=1 Tax=Sphingobium lactosutens DS20 RepID=T0HU61_9SPHN
Sigma-70 family RNA polymerase sigma factor {ECO:0000313|EMBL:KFG89072.1}; TaxID=1219045 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium herbicidovorans (strain ATCC 700291 / DSM 11019 / NBRC; 16415 / MH) (Sphingomonas herbicidovorans).;"
ECF subfamily RNA polymerase sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
|
|
SCNpilot_expt_1000_bf_scaffold_234_3
Sphingobium lactosutens, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(1659..2177)
|
Uncharacterized protein n=1 Tax=Sphingobium lactosutens DS20 RepID=T0HWZ1_9SPHN
rbh
Uncharacterized protein {ECO:0000313|EMBL:EQB16663.1}; TaxID=1331060 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lactosutens DS20.;"
hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_234_4
Sphingobium lactosutens, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(2368..2697)
|
Uncharacterized protein n=1 Tax=Sphingobium lactosutens DS20 RepID=T0J3U9_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB16664.1}; TaxID=1331060 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lactosutens DS20.;"
hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_234_5
uncultured bacterium, Bacteria
|
Not on your lists |
comp(2733..4091)
|
TnpA, transposase n=1 Tax=uncultured bacterium RepID=Q5ZHG0_9BACT
TnpA, transposase {ECO:0000313|EMBL:ADU90902.1}; Transposase {ECO:0000313|EMBL:CAG30881.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
transposase IS4
|
|
SCNpilot_expt_1000_bf_scaffold_234_6
Burkholderia sp. H160, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
5513..6826
|
D-galactonate transporter n=1 Tax=Burkholderia sp. JPY347 RepID=UPI00036F1875
rbh
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:EDZ99526.1}; TaxID=516466 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. H160.;"
major facilitator superfamily protein; K08194 MFS transporter, ACS family, D-galactonate transporter
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_234_7
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
6902..9838
|
hypothetical protein, partial n=1 Tax=Caulobacter sp. JGI 0001010-J14 RepID=UPI00037E6242
Uncharacterized protein {ECO:0000313|EMBL:EQB15083.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
TonB-dependent receptor
|
|
SCNpilot_expt_1000_bf_scaffold_234_8
Burkholderia sp. lig30, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
9869..10735
|
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222};; TaxID=1192124 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. lig30.;"
Shikimate dehydrogenase n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RHZ5_9PROT
shikimate dehydrogenase substrate binding domain protein
|
|
SCNpilot_expt_1000_bf_scaffold_234_9
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
10794..11444
|
TetR family transcriptional regulator n=1 Tax=Bradyrhizobium japonicum RepID=UPI00036F5B1C
transcriptional regulator
Transcriptional regulatory protein {ECO:0000313|EMBL:BAC52087.1}; TaxID=224911 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC; 14792 / USDA 110).;"
|
|
SCNpilot_expt_1000_bf_scaffold_234_10
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
11526..11975
|
aroQ; 3-dehydroquinate dehydratase (EC:4.2.1.10); K03786 3-dehydroquinate dehydratase II [EC:4.2.1.10]
3-dehydroquinate dehydratase 2; Short=3-dehydroquinase 2;; EC=4.2.1.10;; Type II DHQase 2; TaxID=224911 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC; 14792 / USDA 110).;"
3-dehydroquinate dehydratase n=1 Tax=Bradyrhizobium japonicum RepID=UPI00036F46C9
|
|
SCNpilot_expt_1000_bf_scaffold_234_11
Sphingobium quisquiliarum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
11972..12175
|
Uncharacterized protein n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0HVB4_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB01444.1}; TaxID=1329909 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium quisquiliarum P25.;"
|
|
SCNpilot_expt_1000_bf_scaffold_234_12
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(12186..14042)
|
4-hydroxyphenylpyruvate dioxygenase (EC:1.13.11.27); K00457 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]
3-keto-5-aminohexanoate cleavage protein n=1 Tax=Sphingobium yanoikuyae RepID=UPI000262C312
rbh
4-hydroxyphenylpyruvate dioxygenase {ECO:0000313|EMBL:EKU75926.1}; TaxID=883163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae ATCC 51230.;"
|
|
SCNpilot_expt_1000_bf_scaffold_234_13
Candidatus Competibacter denitrificans, Candidatus Competibacter, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(14115..14933)
|
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00228653}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00216361};; TaxID=1400863 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Competibacter.;" source="Candidatus Competibacter denitrificans Run_A_D11.;"
hypothetical protein n=1 Tax=Limnohabitans sp. Rim47 RepID=UPI0002F0F1AB
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_234_14
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(14926..16146)
|
L-carnitine dehydratase/bile acid-inducible protein F n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VMJ0_POLNA
rbh
L-carnitine dehydratase/bile acid-inducible protein F
rbh
L-carnitine dehydratase/bile acid-inducible protein F {ECO:0000313|EMBL:ABM36868.1}; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthalenivorans (strain CJ2).;"
|
|
SCNpilot_expt_1000_bf_scaffold_234_15
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(16143..16607)
|
acyl dehydratase n=1 Tax=Variovorax paradoxus RepID=UPI000374FE29
Acyl dehydratase {ECO:0000313|EMBL:EJL79444.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
monoamine oxidase regulatory protein
|
|
SCNpilot_expt_1000_bf_scaffold_234_16
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(16610..17014)
|
glyoxalase n=1 Tax=Variovorax paradoxus RepID=UPI00037C1D3E
Uncharacterized protein {ECO:0000313|EMBL:EJL79443.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
glyoxalase/bleomycin resistance protein/dioxygenase
|
|
SCNpilot_expt_1000_bf_scaffold_234_17
Sphaerotilus natans, Sphaerotilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(17011..17991)
|
2-dehydropantoate 2-reductase {ECO:0000256|RuleBase:RU003776}; EC=1.1.1.169 {ECO:0000256|RuleBase:RU003776};; TaxID=1286631 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Sphaerotilus.;" source="Sphaerotilus natans subsp. natans DSM 6575.;"
2-dehydropantoate 2-reductase (EC:1.1.1.169); K00077 2-dehydropantoate 2-reductase [EC:1.1.1.169]
rbh
2-dehydropantoate 2-reductase n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VMI7_POLNA
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_234_18
Burkholderia glumae, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
18066..18944
|
Transcriptional regulator, LysR family n=1 Tax=Burkholderia glumae (strain BGR1) RepID=C5AHH7_BURGB
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ACR31357.1}; TaxID=626418 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia glumae (strain BGR1).;"
|
|
SCNpilot_expt_1000_bf_scaffold_234_19
Sphingobium sp. YBL2, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(19400..19876)
|
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0003128FBA
Transposase {ECO:0000313|EMBL:AJR24428.1}; TaxID=484429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. YBL2.;"
transposase
|
|
SCNpilot_expt_1000_bf_scaffold_234_20
Sphingobium sp. YBL2, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(19917..20363)
|
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0003193EAF
Uncharacterized protein {ECO:0000313|EMBL:AJR24427.1}; TaxID=484429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. YBL2.;"
putative transposase
|
|
SCNpilot_expt_1000_bf_scaffold_234_21
Nostoc punctiforme, Nostoc, Nostocales, Cyanobacteria, Bacteria
|
Not on your lists |
20544..23045
|
ATP-dependent OLD family endonuclease n=1 Tax=Citromicrobium sp. JLT1363 RepID=UPI000225E7BE
rbh
ATP-dependent OLD family endonuclease
rbh
ATP-dependent endonuclease of the OLD family-like protein {ECO:0000313|EMBL:ACC79152.1}; TaxID=63737 species="Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Nostoc.;" source="Nostoc punctiforme (strain ATCC 29133 / PCC 73102).;"
|
|
SCNpilot_expt_1000_bf_scaffold_234_22
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
23779..24708
|
Uncharacterized protein n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IBU4_XANP2
rbh
hypothetical protein
rbh
Uncharacterized protein {ECO:0000313|EMBL:ABS65487.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
|
|
SCNpilot_expt_1000_bf_scaffold_234_23
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
24708..26816
|
Uncharacterized protein n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IBU3_XANP2
rbh
Uncharacterized protein {ECO:0000313|EMBL:ABS65486.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
hypothetical protein
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_234_24
Sphingobium sp. YBL2, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(27149..29899)
|
Exonuclease V subunit alpha n=1 Tax=Sphingobium lactosutens DS20 RepID=T0HJZ3_9SPHN
rbh
Exonuclease V subunit alpha {ECO:0000313|EMBL:AJR24199.1}; TaxID=484429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. YBL2.;"
TrwC protein
|
|
SCNpilot_expt_1000_bf_scaffold_234_25
Sphingobium sp. YBL2, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(29899..31746)
|
Type IV secretory protein VirD4 n=1 Tax=Sphingobium lactosutens DS20 RepID=T0HU71_9SPHN
rbh
Conjugal transfer protein TraD {ECO:0000313|EMBL:AJR24200.1}; TaxID=484429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. YBL2.;"
Type IV secretory pathway VirD4 components-like protein
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_234_26
Sphingobium lactosutens, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(31743..32114)
|
Uncharacterized protein n=1 Tax=Sphingobium lactosutens DS20 RepID=T0HX04_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB16673.1}; TaxID=1331060 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lactosutens DS20.;"
hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_234_27
Sphingobium herbicidovorans, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(32322..32867)
|
Uncharacterized protein n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9CT30_SPHYA
Uncharacterized protein {ECO:0000313|EMBL:KFG90340.1}; TaxID=1219045 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium herbicidovorans (strain ATCC 700291 / DSM 11019 / NBRC; 16415 / MH) (Sphingomonas herbicidovorans).;"
|
|
SCNpilot_expt_1000_bf_scaffold_234_28
Sphingobium herbicidovorans, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(32980..33177)
|
UPI0003CFF6FC related cluster n=1 Tax=unknown RepID=UPI0003CFF6FC
Phage transcriptional regulator AlpA {ECO:0000313|EMBL:KFG90341.1}; TaxID=1219045 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium herbicidovorans (strain ATCC 700291 / DSM 11019 / NBRC; 16415 / MH) (Sphingomonas herbicidovorans).;"
hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_234_29
Sphingobium herbicidovorans, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(33251..33589)
|
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UP80_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KFG90342.1}; TaxID=1219045 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium herbicidovorans (strain ATCC 700291 / DSM 11019 / NBRC; 16415 / MH) (Sphingomonas herbicidovorans).;"
|
|
SCNpilot_expt_1000_bf_scaffold_234_30
unknown
|
Not on your lists |
33656..33952
|
This feature has no annotations |