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SCNpilot_expt_1000_bf_scaffold_411

Search features with annotation key words

Displaying items 1-30 of 60 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_411_1
unknown

Not on your lists

comp(2..76)
DNA (75bp) protein (25aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_411_2
RBG_16_Gamma2_60_9_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(112..1323)
DNA (1212bp) protein (404aa)
Uncharacterized protein n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J4F3_POLGS
hypothetical protein
Tax=RBG_16_Gamma2_60_9_curated
SCNpilot_expt_1000_bf_scaffold_411_3
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1757..2512)
DNA (756bp) protein (252aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IP36_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK65675.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_411_4
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2761..3510)
DNA (750bp) protein (250aa)
Transcriptional regulatory protein n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9C9T2_9SPHN
Transcriptional regulatory protein {ECO:0000313|EMBL:EIZ80657.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_411_5
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3706..4113)
DNA (408bp) protein (136aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IP37_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK65676.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_411_6
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4431..5222
DNA (792bp) protein (264aa)
CheY-like response regulator n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IP38_9SPHN rbh
chemotaxis protein CheY rbh
CheY-like response regulator {ECO:0000313|EMBL:BAK65677.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_411_7
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5244..6902)
DNA (1659bp) protein (553aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IP39_9SPHN rbh
hypothetical protein rbh
Putative uncharacterized protein {ECO:0000313|EMBL:BAK65678.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_411_8
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6992..7495
DNA (504bp) protein (168aa)
DNA protection during starvation protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IP40_9SPHN
DNA protection during starvation protein; K04047 starvation-inducible DNA-binding protein
DNA protection during starvation protein {ECO:0000313|EMBL:BAK65679.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_411_9
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7517..7759
DNA (243bp) protein (81aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IP41_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK65680.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_411_10
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7737..8330
DNA (594bp) protein (198aa)
RNA polymerase ECF-type sigma factor n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IP42_9SPHN
RNA polymerase ECF-type sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
RNA polymerase ECF-type sigma factor {ECO:0000313|EMBL:BAK65681.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_411_11
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8393..8773
DNA (381bp) protein (127aa)
Putative response regulator receiver protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IP43_9SPHN
putative response regulator receiver protein
Putative response regulator receiver protein {ECO:0000313|EMBL:BAK65682.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_411_12
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8843..9112
DNA (270bp) protein (90aa)
transglycosylase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B5EE94
Transglycosylase {ECO:0000313|EMBL:AIT05150.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
transglycosylase-associated protein
SCNpilot_expt_1000_bf_scaffold_411_13
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9475..11766)
DNA (2292bp) protein (764aa)
Conserved hypothetical membrane protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IP44_9SPHN rbh
Conserved hypothetical membrane protein {ECO:0000313|EMBL:BAK65683.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_411_14
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11935..14028)
DNA (2094bp) protein (698aa)
Putative bacteriocin processing/transport ATP-binding protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IP45_9SPHN
putative bacteriocin processing/transport ATP-binding protein; K13409 ATP-binding cassette, subfamily B, bacterial RaxB
Putative bacteriocin processing/transport ATP-binding protein {ECO:0000313|EMBL:BAK65684.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_411_15
unknown

Not on your lists

comp(14025..14516)
DNA (492bp) protein (164aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_411_16
unknown

Not on your lists

comp(14752..14856)
DNA (105bp) protein (35aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_411_17
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15701..17797
DNA (2097bp) protein (699aa)
TonB-dependent siderophore receptor n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2IHI8_BEII9 rbh
Scaffold1, whole genome shotgun sequence {ECO:0000313|EMBL:KIS34134.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
TonB-dependent siderophore receptor rbh
SCNpilot_expt_1000_bf_scaffold_411_18
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17794..18636
DNA (843bp) protein (281aa)
hypothetical protein n=1 Tax=Methylosinus sp. LW4 RepID=UPI00038254C0
Scaffold1, whole genome shotgun sequence {ECO:0000313|EMBL:KIS34465.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_411_19
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18974..20704
DNA (1731bp) protein (577aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI000378FDB3 rbh
Cytochrome c biogenesis protein, transmembrane region {ECO:0000313|EMBL:EIZ80942.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
cytochrome c biogenesis protein, transmembrane region
SCNpilot_expt_1000_bf_scaffold_411_20
Sphingobium quisquiliarum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20780..21958
DNA (1179bp) protein (393aa)
hypothetical protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B4507F rbh
Uncharacterized protein {ECO:0000313|EMBL:EQA99316.1}; TaxID=1329909 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium quisquiliarum P25.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_411_21
alpha proteobacterium JLT2015, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21955..23292
DNA (1338bp) protein (446aa)
polysaccharide biosynthesis protein n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B32989 rbh
Polysaccharide biosynthesis family protein {ECO:0000313|EMBL:EMD82260.1}; TaxID=1234595 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium JLT2015.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_411_22
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23316..24065)
DNA (750bp) protein (250aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9C6R2_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EIZ79155.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_411_23
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24062..24964)
DNA (903bp) protein (301aa)
Uncharacterized protein n=1 Tax=Caulobacter sp. (strain K31) RepID=B0T2J2_CAUSK rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABZ70813.1}; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCNpilot_expt_1000_bf_scaffold_411_24
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24961..25953)
DNA (993bp) protein (331aa)
diacylglycerol kinase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B461CA
Uncharacterized protein {ECO:0000313|EMBL:AIT08163.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_411_25
Kirrobacter mercurialis, Kirrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26262..27353
DNA (1092bp) protein (364aa)
hypothetical protein n=1 Tax=Sphingobium sp. YL23 RepID=UPI0003B3CA93 rbh
Uncharacterized protein {ECO:0000313|EMBL:KHL26685.1}; TaxID=1572751 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Kirrobacter.;" source="Kirrobacter mercurialis.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_411_26
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27429..28103)
DNA (675bp) protein (225aa)
Tight adherence protein TadE n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IIF0_9SPHN
tight adherence protein TadE
Tight adherence protein TadE {ECO:0000313|EMBL:BAK67073.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_411_27
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28100..28798)
DNA (699bp) protein (233aa)
Tight adherence protein TadE n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IIE9_9SPHN
tight adherence protein TadE
Tight adherence protein TadE {ECO:0000313|EMBL:BAK67072.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_411_28
Sphingobium lactosutens, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28798..30765)
DNA (1968bp) protein (656aa)
Uncharacterized protein n=1 Tax=Sphingobium lactosutens DS20 RepID=T0IWQ4_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:EQB16270.1}; TaxID=1331060 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lactosutens DS20.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_411_29
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30871..31554
DNA (684bp) protein (228aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IIE7_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK67070.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_411_30
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31634..32116
DNA (483bp) protein (161aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IIE6_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK67069.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Displaying items 1-30 of 60 in total

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