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SCNpilot_expt_1000_bf_scaffold_439

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Displaying items 1-30 of 232 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_439_1
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..418)
DNA (417bp) protein (139aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P5N4_9BRAD
Site-specific tyrosine recombinase XerD {ECO:0000313|EMBL:CEG10253.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
putative integrase
SCNpilot_expt_1000_bf_scaffold_439_2
Ochrobactrum sp. EGD-AQ16, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(936..2498)
DNA (1563bp) protein (521aa)
Uncharacterized protein n=1 Tax=Ochrobactrum sp. EGD-AQ16 RepID=U1YXD4_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:ERI15336.1}; TaxID=1390361 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. EGD-AQ16.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_439_3
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2546..3043
DNA (498bp) protein (166aa)
Transcriptional regulator, MarR family n=1 Tax=Cystobacter fuscus DSM 2262 RepID=S9P6G0_9DELT
MarR family transcriptional regulator {ECO:0000313|EMBL:ETR74908.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_439_4
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3372..3800)
DNA (429bp) protein (143aa)
Putative Rrf2 family DNA binding protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJ22_9SPHN
putative Rrf2 family DNA binding protein
Putative Rrf2 family DNA binding protein {ECO:0000313|EMBL:BAK67192.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_439_5
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3913..4692
DNA (780bp) protein (260aa)
Putative methyltransferase {ECO:0000313|EMBL:BAK67193.1}; EC=2.1.1.- {ECO:0000313|EMBL:BAK67193.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Putative methyltransferase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJ23_9SPHN rbh
putative methyltransferase rbh
SCNpilot_expt_1000_bf_scaffold_439_6
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4937..5422)
DNA (486bp) protein (162aa)
MarR family transcriptional regulator n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJ09_9SPHN
MarR family transcriptional regulator
MarR family transcriptional regulator {ECO:0000313|EMBL:BAK67179.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_439_7
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5502..6344
DNA (843bp) protein (281aa)
Feruloyl-CoA hydratase/lyase n=2 Tax=Sphingomonadaceae RepID=G2IJ08_9SPHN
ferB; feruloyl-CoA hydratase/lyase
Feruloyl-CoA hydratase/lyase {ECO:0000313|EMBL:BAK67178.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_439_8
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6388..8517
DNA (2130bp) protein (710aa)
Feruloyl-CoA synthetase n=2 Tax=Sphingomonadaceae RepID=G2IJ07_9SPHN rbh
Feruloyl-CoA synthetase {ECO:0000313|EMBL:BAB86294.1}; TaxID=13689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis (Pseudomonas paucimobilis).;"
ferA; feruloyl-CoA synthetase rbh
SCNpilot_expt_1000_bf_scaffold_439_9
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8856..9575
DNA (720bp) protein (240aa)
Putative hydrolase n=2 Tax=Sphingomonadaceae RepID=G2IJ06_9SPHN rbh
putative hydrolase rbh
Putative hydrolase {ECO:0000313|EMBL:BAK67176.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_439_10
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9629..11017
DNA (1389bp) protein (463aa)
Syringate O-demethylase n=2 Tax=Sphingomonadaceae RepID=G2IJ05_9SPHN rbh
desA; syringate O-demethylase rbh
Syringate O-demethylase {ECO:0000313|EMBL:BAK67175.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_439_11
Arenimonas donghaensis, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11361..11699
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NFT1_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:KFL37915.1}; TaxID=1121014 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas donghaensis DSM 18148 = HO3-R19.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_439_12
Arenimonas donghaensis, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11705..12115
DNA (411bp) protein (137aa)
Putative membrane protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NMK3_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:KFL37916.1}; TaxID=1121014 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas donghaensis DSM 18148 = HO3-R19.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_439_13
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12153..12866
DNA (714bp) protein (238aa)
RNA polymerase sigma factor n=1 Tax=Methylocystis sp. (strain SC2) RepID=I4EB06_METSZ rbh
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_expt_1000_bf_scaffold_439_14
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12971..13165)
DNA (195bp) protein (65aa)
Uncharacterized protein n=1 Tax=Sphingobium ummariense RL-3 RepID=T0J7X6_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB32952.1}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_439_15
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13168..13491)
DNA (324bp) protein (108aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJ03_9SPHN
hypothetical protein; K11312 cupin 2 domain-containing protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK67173.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_439_16
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13491..14237)
DNA (747bp) protein (249aa)
IclR family transcriptional regulator n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJ02_9SPHN
IclR family transcriptional regulator
IclR family transcriptional regulator {ECO:0000313|EMBL:BAK67172.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_439_17
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14271..15149)
DNA (879bp) protein (293aa)
Putative uncharacterized protein n=2 Tax=Sphingomonadaceae RepID=G2IJ01_9SPHN rbh
hypothetical protein rbh
Putative uncharacterized protein {ECO:0000313|EMBL:BAK67171.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_439_18
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15378..17819)
DNA (2442bp) protein (814aa)
TonB-dependent receptor-like protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IIW5_9SPHN
TonB-dependent receptor-like protein
TonB-dependent receptor-like protein {ECO:0000313|EMBL:BAK67135.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_439_19
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17897..19504)
DNA (1608bp) protein (536aa)
mdlC; benzoylformate decarboxylase; K01576 benzoylformate decarboxylase [EC:4.1.1.7] rbh
Benzoylformate decarboxylase {ECO:0000313|EMBL:BAK67170.1}; EC=4.1.1.7 {ECO:0000313|EMBL:BAK67170.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Benzoylformate decarboxylase n=2 Tax=Sphingomonadaceae RepID=G2IJ00_9SPHN rbh
SCNpilot_expt_1000_bf_scaffold_439_20
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19901..20908)
DNA (1008bp) protein (336aa)
Zn-dependent alcohol dehydrogenase {ECO:0000313|EMBL:BAK67169.1}; EC=1.1.1.- {ECO:0000313|EMBL:BAK67169.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Zn-dependent alcohol dehydrogenase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IIZ9_9SPHN rbh
Zn-dependent alcohol dehydrogenase rbh
SCNpilot_expt_1000_bf_scaffold_439_21
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20956..22074)
DNA (1119bp) protein (373aa)
aryl-alcohol dehydrogenase; K00055 aryl-alcohol dehydrogenase [EC:1.1.1.90] rbh
Aryl-alcohol dehydrogenase {ECO:0000313|EMBL:BAK67168.1}; EC=1.1.1.90 {ECO:0000313|EMBL:BAK67168.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Aryl-alcohol dehydrogenase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IIZ8_9SPHN rbh
SCNpilot_expt_1000_bf_scaffold_439_22
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22105..22953)
DNA (849bp) protein (283aa)
Oxidoreductase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IIZ7_9SPHN rbh
Oxidoreductase {ECO:0000313|EMBL:BAK67167.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
oxidoreductase rbh
SCNpilot_expt_1000_bf_scaffold_439_23
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23027..23572)
DNA (546bp) protein (182aa)
2,4'-dihydroxyacetophenone dioxygenase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IIZ6_9SPHN rbh
2,4'-dihydroxyacetophenone dioxygenase rbh
2,4'-dihydroxyacetophenone dioxygenase {ECO:0000313|EMBL:BAK67166.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_439_24
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23641..24042)
DNA (402bp) protein (134aa)
Glyoxalase-family protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IIZ5_9SPHN
glyoxalase-family protein
Glyoxalase-family protein {ECO:0000313|EMBL:BAK67165.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_439_25
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24463..27051)
DNA (2589bp) protein (863aa)
TonB-dependent receptor-like protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQP3_9SPHN rbh
Ferripyoverdine receptor {ECO:0000313|EMBL:AKH43199.1}; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
TonB-dependent receptor-like protein rbh
SCNpilot_expt_1000_bf_scaffold_439_26
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27287..28417
DNA (1131bp) protein (377aa)
hypothetical protein; K00549 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] rbh
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQP4_9SPHN rbh
Putative uncharacterized protein {ECO:0000313|EMBL:BAK65916.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_439_27
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28607..29842)
DNA (1236bp) protein (412aa)
Major facilitator superfamily protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQP5_9SPHN
major facilitator superfamily protein
Major facilitator superfamily protein {ECO:0000313|EMBL:BAK65917.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_439_28
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29847..31124)
DNA (1278bp) protein (426aa)
Major facilitator superfamily protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQP5_9SPHN
major facilitator superfamily protein
Major facilitator superfamily protein {ECO:0000313|EMBL:BAK65917.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_439_29
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31194..32054)
DNA (861bp) protein (287aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQP7_9SPHN rbh
hypothetical protein rbh
Putative uncharacterized protein {ECO:0000313|EMBL:BAK65919.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_439_30
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32058..32507)
DNA (450bp) protein (150aa)
hypothetical protein; K01075 4-hydroxybenzoyl-CoA thioesterase [EC:3.1.2.23]
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQP8_9SPHN
Putative uncharacterized protein {ECO:0000313|EMBL:BAK65920.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Displaying items 1-30 of 232 in total

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