ggKbase home page

SCNpilot_expt_1000_bf_scaffold_1324

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1324_1
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

104..319
DNA (216bp) protein (72aa)
conjugal transfer protein TraI n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00036C9A12
Conjugal transfer protein TrbI {ECO:0000313|EMBL:EZP81834.1}; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium resinovorum.;"
conjugation TrbI family protein; K03195 type IV secretion system protein VirB10
SCNpilot_expt_1000_bf_scaffold_1324_2
RHI_Sphingopyxis_65_19, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

316..537
DNA (222bp) protein (74aa)
hypothetical protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00037D43EE
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Sphingopyxis_65_19_curated
SCNpilot_expt_1000_bf_scaffold_1324_3
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(553..861)
DNA (309bp) protein (103aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0GQX3_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB03092.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1324_4
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(955..1866)
DNA (912bp) protein (304aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0GH79_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:EQB03091.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
LysR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1324_5
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2212..2658)
DNA (447bp) protein (149aa)
Putative uncharacterized protein n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CL53_VARPS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACS21204.1}; Flags: Precursor;; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_expt_1000_bf_scaffold_1324_6
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2681..3913)
DNA (1233bp) protein (411aa)
Type I secretion membrane fusion protein, HlyD family n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CL54_VARPS rbh
HlyD family type I secretion membrane fusion protein; K12542 membrane fusion protein LapC rbh
Type I secretion membrane fusion protein, HlyD family {ECO:0000313|EMBL:ACS21205.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_expt_1000_bf_scaffold_1324_7
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3910..6168)
DNA (2259bp) protein (753aa)
Type I secretion system ATPase n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CL55_VARPS rbh
type I secretion system ATPase; K12541 ATP-binding cassette, subfamily C, bacterial LapB rbh
Type I secretion system ATPase {ECO:0000313|EMBL:ACS21206.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_expt_1000_bf_scaffold_1324_8
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6165..7565)
DNA (1401bp) protein (467aa)
Putative type I secretion outer membrane protein, TolC family n=1 Tax=Variovorax paradoxus B4 RepID=T1XGX9_VARPD rbh
putative type I secretion outer membrane protein, TolC family rbh
Putative type I secretion outer membrane protein, TolC family {ECO:0000313|EMBL:AGU51776.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_expt_1000_bf_scaffold_1324_9
Acinetobacter baumannii, Acinetobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7697..15079)
DNA (7383bp) protein (2461aa)
T1SS-143 repeat domain protein (Fragment) n=1 Tax=Acinetobacter baumannii Naval-82 RepID=K6N0T9_ACIBA rbh
Uncharacterized protein {ECO:0000313|EMBL:KCY46564.1}; Flags: Fragment;; TaxID=1310816 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii complex.;" source="Acinetobacter baumannii 1571545.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1324_10
Methanobacterium lacus, Methanobacterium, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

comp(16376..17845)
DNA (1470bp) protein (490aa)
Outer membrane adhesin like proteiin n=1 Tax=Denitrovibrio acetiphilus (strain DSM 12809 / N2460) RepID=D4H4D4_DENA2
hypothetical protein
Conserved repeat domain protein {ECO:0000313|EMBL:ADZ09590.1}; TaxID=877455 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobacterium.;" source="Methanobacterium lacus (strain AL-21).;"
SCNpilot_expt_1000_bf_scaffold_1324_11
Sphingobium herbicidovorans, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19002..20276
DNA (1275bp) protein (425aa)
Putative integrase n=1 Tax=Sphingobium indicum B90A RepID=I5BBV4_9SPHN rbh
Integrase {ECO:0000313|EMBL:KFG89895.1}; TaxID=1219045 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium herbicidovorans (strain ATCC 700291 / DSM 11019 / NBRC; 16415 / MH) (Sphingomonas herbicidovorans).;"
putative integrase
SCNpilot_expt_1000_bf_scaffold_1324_12
unknown

Not on your lists

comp(20308..20505)
DNA (198bp) protein (66aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1324_13
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20636..20833)
DNA (198bp) protein (66aa)
Uncharacterized protein n=1 Tax=Sphingobium ummariense RL-3 RepID=T0KIZ2_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB33258.1}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1324_14
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20830..21060)
DNA (231bp) protein (77aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJA1_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAM00352.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1324_15
RHI_Sphingopyxis_65_19, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21063..22286)
DNA (1224bp) protein (408aa)
conjugal transfer protein TrbI n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248AB85
conjugal transfer protein TrbI; K03195 type IV secretion system protein VirB10
Tax=RIFCSPHIGHO2_12_FULL_Sphingopyxis_65_19_curated
SCNpilot_expt_1000_bf_scaffold_1324_16
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22283..23194)
DNA (912bp) protein (304aa)
Conjugal transfer protein TrbG n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJA3_9SPHN
conjugal transfer protein TrbG; K03204 type IV secretion system protein VirB9
Conjugal transfer protein TrbG {ECO:0000313|EMBL:BAK67273.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_1324_17
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23191..24012)
DNA (822bp) protein (274aa)
Conjugal transfer protein TrbF n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJA4_9SPHN rbh
conjugal transfer protein TrbF; K03200 type IV secretion system protein VirB5 rbh
Conjugal transfer protein TrbF {ECO:0000313|EMBL:BAK67274.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_expt_1000_bf_scaffold_1324_18
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24016..25302)
DNA (1287bp) protein (429aa)
conjugal transfer protein TrbL n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248AB88 rbh
Conjugal transfer protein trbL {ECO:0000313|EMBL:KEQ53257.1}; TaxID=46429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum.;"
conjugal transfer protein TrbL; K07344 type IV secretion system protein TrbL
SCNpilot_expt_1000_bf_scaffold_1324_19
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25418..26161)
DNA (744bp) protein (248aa)
Conjugal transfer protein TrbJ n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WH66_9SPHN rbh
Conjugal transfer protein TrbJ {ECO:0000313|EMBL:ENY82796.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
conjugal transfer protein TrbJ
SCNpilot_expt_1000_bf_scaffold_1324_20
RHI_Sphingopyxis_65_19, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26161..28617)
DNA (2457bp) protein (819aa)
conjugal transfer protein TrbE n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00037D4A75
conjugal transfer protein TrbE; K03199 type IV secretion system protein VirB4
Tax=RIFCSPHIGHO2_12_FULL_Sphingopyxis_65_19_curated
SCNpilot_expt_1000_bf_scaffold_1324_21
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28611..28898)
DNA (288bp) protein (96aa)
conjugal transfer protein TrbD n=1 Tax=alpha proteobacterium LLX12A RepID=UPI0003703556
Conjugal transfer protein TrbD {ECO:0000313|EMBL:KHS45918.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
conjugal transfer protein TrbD; K03198 type IV secretion system protein VirB3
SCNpilot_expt_1000_bf_scaffold_1324_22
RHI_Sphingopyxis_65_19, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28895..29230)
DNA (336bp) protein (112aa)
conjugal transfer protein TrbC n=1 Tax=alpha proteobacterium LLX12A RepID=UPI000366C078
conjugal transfer protein TrbC; K03197 type IV secretion system protein VirB2
Tax=RIFCSPHIGHO2_12_FULL_Sphingopyxis_65_19_curated
SCNpilot_expt_1000_bf_scaffold_1324_23
RHI_Sphingopyxis_65_19, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29233..30222)
DNA (990bp) protein (330aa)
conjugal transfer protein TrbB n=1 Tax=alpha proteobacterium LLX12A RepID=UPI0003613288
conjugal transfer protein TrbB; K03196 type IV secretion system protein VirB11 rbh
Tax=RIFCSPHIGHO2_12_FULL_Sphingopyxis_65_19_curated
SCNpilot_expt_1000_bf_scaffold_1324_24
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30219..30623)
DNA (405bp) protein (135aa)
CopG domain protein DNA-binding domain protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HU68_PARL1
CopG/DNA-binding domain-containing protein
CopG domain protein DNA-binding domain protein {ECO:0000313|EMBL:ABS63451.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_expt_1000_bf_scaffold_1324_25
RHI_Sphingopyxis_65_19, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30627..32654)
DNA (2028bp) protein (676aa)
conjugal transfer protein TraG n=1 Tax=alpha proteobacterium LLX12A RepID=UPI0003739346 rbh
conjugal transfer protein TraG; K03205 type IV secretion system protein VirD4 rbh
Tax=RIFCSPHIGHO2_12_FULL_Sphingopyxis_65_19_curated
Displaying 25 items

View Taxonomy