name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
SCNpilot_expt_1000_bf_scaffold_1324_1
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
104..319
|
conjugal transfer protein TraI n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00036C9A12
Conjugal transfer protein TrbI {ECO:0000313|EMBL:EZP81834.1}; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium resinovorum.;"
conjugation TrbI family protein; K03195 type IV secretion system protein VirB10
|
|
SCNpilot_expt_1000_bf_scaffold_1324_2
RHI_Sphingopyxis_65_19, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
316..537
|
hypothetical protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00037D43EE
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Sphingopyxis_65_19_curated
|
|
SCNpilot_expt_1000_bf_scaffold_1324_3
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(553..861)
|
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0GQX3_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB03092.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_1324_4
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(955..1866)
|
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0GH79_9SPHN
rbh
Uncharacterized protein {ECO:0000313|EMBL:EQB03091.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
LysR family transcriptional regulator
|
|
SCNpilot_expt_1000_bf_scaffold_1324_5
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(2212..2658)
|
Putative uncharacterized protein n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CL53_VARPS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACS21204.1}; Flags: Precursor;; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
|
|
SCNpilot_expt_1000_bf_scaffold_1324_6
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(2681..3913)
|
Type I secretion membrane fusion protein, HlyD family n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CL54_VARPS
rbh
HlyD family type I secretion membrane fusion protein; K12542 membrane fusion protein LapC
rbh
Type I secretion membrane fusion protein, HlyD family {ECO:0000313|EMBL:ACS21205.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
|
|
SCNpilot_expt_1000_bf_scaffold_1324_7
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(3910..6168)
|
Type I secretion system ATPase n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CL55_VARPS
rbh
type I secretion system ATPase; K12541 ATP-binding cassette, subfamily C, bacterial LapB
rbh
Type I secretion system ATPase {ECO:0000313|EMBL:ACS21206.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
|
|
SCNpilot_expt_1000_bf_scaffold_1324_8
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(6165..7565)
|
Putative type I secretion outer membrane protein, TolC family n=1 Tax=Variovorax paradoxus B4 RepID=T1XGX9_VARPD
rbh
putative type I secretion outer membrane protein, TolC family
rbh
Putative type I secretion outer membrane protein, TolC family {ECO:0000313|EMBL:AGU51776.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
|
|
SCNpilot_expt_1000_bf_scaffold_1324_9
Acinetobacter baumannii, Acinetobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(7697..15079)
|
T1SS-143 repeat domain protein (Fragment) n=1 Tax=Acinetobacter baumannii Naval-82 RepID=K6N0T9_ACIBA
rbh
Uncharacterized protein {ECO:0000313|EMBL:KCY46564.1}; Flags: Fragment;; TaxID=1310816 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii complex.;" source="Acinetobacter baumannii 1571545.;"
hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_1324_10
Methanobacterium lacus, Methanobacterium, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea
|
Not on your lists |
comp(16376..17845)
|
Outer membrane adhesin like proteiin n=1 Tax=Denitrovibrio acetiphilus (strain DSM 12809 / N2460) RepID=D4H4D4_DENA2
hypothetical protein
Conserved repeat domain protein {ECO:0000313|EMBL:ADZ09590.1}; TaxID=877455 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobacterium.;" source="Methanobacterium lacus (strain AL-21).;"
|
|
SCNpilot_expt_1000_bf_scaffold_1324_11
Sphingobium herbicidovorans, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
19002..20276
|
Putative integrase n=1 Tax=Sphingobium indicum B90A RepID=I5BBV4_9SPHN
rbh
Integrase {ECO:0000313|EMBL:KFG89895.1}; TaxID=1219045 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium herbicidovorans (strain ATCC 700291 / DSM 11019 / NBRC; 16415 / MH) (Sphingomonas herbicidovorans).;"
putative integrase
|
|
SCNpilot_expt_1000_bf_scaffold_1324_12
unknown
|
Not on your lists |
comp(20308..20505)
|
This feature has no annotations |
|
SCNpilot_expt_1000_bf_scaffold_1324_13
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(20636..20833)
|
Uncharacterized protein n=1 Tax=Sphingobium ummariense RL-3 RepID=T0KIZ2_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB33258.1}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_1324_14
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(20830..21060)
|
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJA1_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAM00352.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_1324_15
RHI_Sphingopyxis_65_19, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(21063..22286)
|
conjugal transfer protein TrbI n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248AB85
conjugal transfer protein TrbI; K03195 type IV secretion system protein VirB10
Tax=RIFCSPHIGHO2_12_FULL_Sphingopyxis_65_19_curated
|
|
SCNpilot_expt_1000_bf_scaffold_1324_16
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(22283..23194)
|
Conjugal transfer protein TrbG n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJA3_9SPHN
conjugal transfer protein TrbG; K03204 type IV secretion system protein VirB9
Conjugal transfer protein TrbG {ECO:0000313|EMBL:BAK67273.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
|
|
SCNpilot_expt_1000_bf_scaffold_1324_17
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(23191..24012)
|
Conjugal transfer protein TrbF n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IJA4_9SPHN
rbh
conjugal transfer protein TrbF; K03200 type IV secretion system protein VirB5
rbh
Conjugal transfer protein TrbF {ECO:0000313|EMBL:BAK67274.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
|
|
SCNpilot_expt_1000_bf_scaffold_1324_18
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(24016..25302)
|
conjugal transfer protein TrbL n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248AB88
rbh
Conjugal transfer protein trbL {ECO:0000313|EMBL:KEQ53257.1}; TaxID=46429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum.;"
conjugal transfer protein TrbL; K07344 type IV secretion system protein TrbL
|
|
SCNpilot_expt_1000_bf_scaffold_1324_19
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(25418..26161)
|
Conjugal transfer protein TrbJ n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WH66_9SPHN
rbh
Conjugal transfer protein TrbJ {ECO:0000313|EMBL:ENY82796.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
conjugal transfer protein TrbJ
|
|
SCNpilot_expt_1000_bf_scaffold_1324_20
RHI_Sphingopyxis_65_19, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(26161..28617)
|
conjugal transfer protein TrbE n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00037D4A75
conjugal transfer protein TrbE; K03199 type IV secretion system protein VirB4
Tax=RIFCSPHIGHO2_12_FULL_Sphingopyxis_65_19_curated
|
|
SCNpilot_expt_1000_bf_scaffold_1324_21
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(28611..28898)
|
conjugal transfer protein TrbD n=1 Tax=alpha proteobacterium LLX12A RepID=UPI0003703556
Conjugal transfer protein TrbD {ECO:0000313|EMBL:KHS45918.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
conjugal transfer protein TrbD; K03198 type IV secretion system protein VirB3
|
|
SCNpilot_expt_1000_bf_scaffold_1324_22
RHI_Sphingopyxis_65_19, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(28895..29230)
|
conjugal transfer protein TrbC n=1 Tax=alpha proteobacterium LLX12A RepID=UPI000366C078
conjugal transfer protein TrbC; K03197 type IV secretion system protein VirB2
Tax=RIFCSPHIGHO2_12_FULL_Sphingopyxis_65_19_curated
|
|
SCNpilot_expt_1000_bf_scaffold_1324_23
RHI_Sphingopyxis_65_19, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(29233..30222)
|
conjugal transfer protein TrbB n=1 Tax=alpha proteobacterium LLX12A RepID=UPI0003613288
conjugal transfer protein TrbB; K03196 type IV secretion system protein VirB11
rbh
Tax=RIFCSPHIGHO2_12_FULL_Sphingopyxis_65_19_curated
|
|
SCNpilot_expt_1000_bf_scaffold_1324_24
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(30219..30623)
|
CopG domain protein DNA-binding domain protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HU68_PARL1
CopG/DNA-binding domain-containing protein
CopG domain protein DNA-binding domain protein {ECO:0000313|EMBL:ABS63451.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
|
|
SCNpilot_expt_1000_bf_scaffold_1324_25
RHI_Sphingopyxis_65_19, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(30627..32654)
|
conjugal transfer protein TraG n=1 Tax=alpha proteobacterium LLX12A RepID=UPI0003739346
rbh
conjugal transfer protein TraG; K03205 type IV secretion system protein VirD4
rbh
Tax=RIFCSPHIGHO2_12_FULL_Sphingopyxis_65_19_curated
|