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SCNpilot_expt_1000_bf_scaffold_96

Search features with annotation key words

Displaying items 1-30 of 260 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_96_1
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(62..796)
DNA (735bp) protein (245aa)
integral membrane sensor signal transduction histidine kinase; K10125 two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3]
C4-dicarboxylate transport sensor protein DctB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D6R8_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KKB83643.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
SCNpilot_expt_1000_bf_scaffold_96_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(780..2072)
DNA (1293bp) protein (431aa)
Phosphoglycerate transport regulatory protein PgtC n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CXY0_9RHIZ rbh
Phosphoglycerate transport regulatory protein PgtC {ECO:0000313|EMBL:EYR78576.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
family 1 extracellular solute-binding protein
SCNpilot_expt_1000_bf_scaffold_96_3
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2136..3260)
DNA (1125bp) protein (375aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002F5EE1C
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KKB83647.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
ABC transporter
SCNpilot_expt_1000_bf_scaffold_96_4
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3257..4966)
DNA (1710bp) protein (570aa)
Binding-protein-dependent transport system inner membrane component n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CHT1_9RHIZ rbh
ABC transporter permease {ECO:0000313|EMBL:KKB83646.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
binding-protein-dependent transporters inner membrane component; K02011 iron(III) transport system permease protein
SCNpilot_expt_1000_bf_scaffold_96_5
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5060..6373)
DNA (1314bp) protein (438aa)
Phosphoglycerate transport regulatory protein PgtC n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EYH1_9RHIZ
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KKB83645.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
family 1 extracellular solute-binding protein
SCNpilot_expt_1000_bf_scaffold_96_6
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6736..8931
DNA (2196bp) protein (732aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002F3CE89
CRISPR-associated protein Cas3 {ECO:0000313|EMBL:EZQ15854.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
CRISPR-associated helicase Cas3; K07012
SCNpilot_expt_1000_bf_scaffold_96_7
Rhodomicrobium vannielii, Rhodomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9013..9681
DNA (669bp) protein (223aa)
CRISPR-associated protein n=1 Tax=Methylocystis parvus RepID=UPI0002FD30B5
CRISPR-associated protein Cas5 family
CRISPR-associated protein Cas5 family {ECO:0000313|EMBL:ADP70485.1}; TaxID=648757 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Rhodomicrobium.;" source="Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 /; LMG 4299).;"
SCNpilot_expt_1000_bf_scaffold_96_8
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9678..11462
DNA (1785bp) protein (595aa)
CRISPR-associated protein, Csd1 family n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SR92_NITWN
CRISPR-associated Csd1 family protein
CRISPR-associated protein, Csd1 family {ECO:0000313|EMBL:ABA05199.1}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
SCNpilot_expt_1000_bf_scaffold_96_9
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11459..12412
DNA (954bp) protein (318aa)
CRISPR-associated protein, Csd2 family n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SR93_NITWN rbh
CRISPR-associated Csh2 family protein rbh
CRISPR-associated protein, Csd2 family {ECO:0000313|EMBL:ABA05198.1}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
SCNpilot_expt_1000_bf_scaffold_96_10
Phaeospirillum molischianum, Phaeospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12423..13097
DNA (675bp) protein (225aa)
CRISPR-associated exonuclease, Cas4 family n=1 Tax=Phaeospirillum molischianum DSM 120 RepID=H8FNE0_PHAMO rbh
CRISPR-associated exonuclease, Cas4 family {ECO:0000313|EMBL:CCG39878.1}; TaxID=1150626 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Phaeospirillum.;" source="Phaeospirillum molischianum DSM 120.;"
CRISPR-associated protein Cas4; K07464 putative RecB family exonuclease
SCNpilot_expt_1000_bf_scaffold_96_11

Not on your lists

13094..14128
DNA (1035bp) protein (345aa)
CRISPR-associated endonuclease Cas1 n=1 Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) RepID=E3I4H4_RHOVT rbh
Uncharacterized protein {ECO:0000313|EMBL:KKM44002.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
CRISPR-associated protein Cas1; K15342 CRISP-associated protein Cas1 rbh
SCNpilot_expt_1000_bf_scaffold_96_12
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14131..14421
DNA (291bp) protein (97aa)
CRISPR-associated endoribonuclease Cas2 {ECO:0000256|HAMAP-Rule:MF_01471}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01471};; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
CRISPR-associated endoribonuclease Cas2 n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4QS07_9RHIZ
CRISPR-associated protein Cas2
SCNpilot_expt_1000_bf_scaffold_96_13
BJP_08E140C01_Roseovarius_63_250, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14557..15255
DNA (699bp) protein (233aa)
Putative uncharacterized protein id=3591432 bin=GWB1_Spirochaetes_59_5 species=Desulfotomaculum gibsoniae genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes
Tax=BJP_08E140C01_Roseovarius_63_250
SCNpilot_expt_1000_bf_scaffold_96_14
Rhodobacter capsulatus, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16862..17869
DNA (1008bp) protein (336aa)
Uncharacterized protein n=1 Tax=Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003) RepID=D5ASG8_RHOCB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADE85059.1}; TaxID=272942 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003).;"
SCNpilot_expt_1000_bf_scaffold_96_15
Rhodobacter capsulatus, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19989..21194
DNA (1206bp) protein (402aa)
Uncharacterized protein n=1 Tax=Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003) RepID=D5ASG8_RHOCB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADE85059.1}; TaxID=272942 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003).;"
SCNpilot_expt_1000_bf_scaffold_96_16
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21796..22182
DNA (387bp) protein (129aa)
hypothetical protein n=1 Tax=Rhizobium loti RepID=UPI000370E55E
Inner-membrane translocator {ECO:0000313|EMBL:CDX32877.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
inner-membrane translocator; K02057 simple sugar transport system permease protein
SCNpilot_expt_1000_bf_scaffold_96_17
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22185..22409
DNA (225bp) protein (75aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003796F21
Inner-membrane translocator {ECO:0000313|EMBL:CDX32877.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
inner-membrane translocator; K02057 simple sugar transport system permease protein
SCNpilot_expt_1000_bf_scaffold_96_18
Mesorhizobium opportunistum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22406..23290
DNA (885bp) protein (295aa)
SMP-30/Gluconolaconase/LRE domain protein n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7Y415_MESOW
SMP-30/Gluconolaconase/LRE domain-containing protein
SMP-30/Gluconolaconase/LRE domain protein {ECO:0000313|EMBL:AEH84992.1}; TaxID=536019 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
SCNpilot_expt_1000_bf_scaffold_96_19
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23354..24112)
DNA (759bp) protein (253aa)
Binding-protein-dependent transporter inner membrane component n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2N8L7_9RHIZ rbh
Binding-protein-dependent transporter inner membrane component {ECO:0000313|EMBL:EKF20453.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
binding-protein-dependent transporter inner membrane component; K02050 NitT/TauT family transport system permease protein
SCNpilot_expt_1000_bf_scaffold_96_20
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24112..24909)
DNA (798bp) protein (266aa)
ABC transporter-like protein n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2LRP8_9RHIZ rbh
ABC transporter-like protein {ECO:0000313|EMBL:EKF20454.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
ABC transporter-like protein; K02049 NitT/TauT family transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_96_21
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24906..25718)
DNA (813bp) protein (271aa)
Binding-protein-dependent transporter inner membrane component n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MIB8_9RHIZ rbh
Binding-protein-dependent transporter inner membrane component {ECO:0000313|EMBL:EKF20455.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
binding-protein-dependent transporter inner membrane component; K02050 NitT/TauT family transport system permease protein
SCNpilot_expt_1000_bf_scaffold_96_22
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25718..26680)
DNA (963bp) protein (321aa)
ABC-type nitrate/sulfonate/bicarbonate transporter periplasmic proteins-like protein n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2ME48_9RHIZ rbh
ABC-type nitrate/sulfonate/bicarbonate transporter periplasmic proteins-like protein {ECO:0000313|EMBL:EKF20456.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
SCNpilot_expt_1000_bf_scaffold_96_23
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26873..27550
DNA (678bp) protein (226aa)
GntR family transcriptional regulator n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MSU9_9RHIZ
GntR family transcriptional regulator {ECO:0000313|EMBL:EKF20457.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
GntR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_96_24
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27656..28069
DNA (414bp) protein (138aa)
hypothetical protein n=1 Tax=Rhizobium loti RepID=UPI000364C3FC
Cupin {ECO:0000313|EMBL:KFL27311.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
cupin
SCNpilot_expt_1000_bf_scaffold_96_25
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28069..29148
DNA (1080bp) protein (360aa)
Malate dehydrogenase {ECO:0000313|EMBL:CDP52453.1}; EC=1.1.1.37 {ECO:0000313|EMBL:CDP52453.1};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
hypothetical protein n=1 Tax=Rhizobium loti RepID=UPI00035D6B27
Malate/L-lactate dehydrogenase
SCNpilot_expt_1000_bf_scaffold_96_26
bacterium YEK0313, Bacteria

Not on your lists

29145..29543
DNA (399bp) protein (133aa)
Endoribonuclease L-PSP n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CKI1_VARPS
2-aminomuconate deaminase {ECO:0000313|EMBL:CEJ15525.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
endoribonuclease L-PSP
SCNpilot_expt_1000_bf_scaffold_96_27
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29548..30447
DNA (900bp) protein (300aa)
5-carboxymethyl-2-hydroxymuconate delta-isomerase (EC:5.3.3.10) rbh
5-carboxymethyl-2-hydroxymuconate Delta-isomerase n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CKI0_VARPS rbh
5-carboxymethyl-2-hydroxymuconate isomerase {ECO:0000313|EMBL:KFL27309.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
SCNpilot_expt_1000_bf_scaffold_96_28
bacterium YEK0313, Bacteria

Not on your lists

30476..31456
DNA (981bp) protein (327aa)
amidohydrolase 2; K03392 aminocarboxymuconate-semialdehyde decarboxylase [EC:4.1.1.45]
Amidohydrolase 2 n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CKH8_VARPS
Amidohydrolase {ECO:0000313|EMBL:CEJ15529.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
SCNpilot_expt_1000_bf_scaffold_96_29
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31783..32661)
DNA (879bp) protein (293aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036215A9
Transcriptional regulator, IclR family {ECO:0000313|EMBL:CDX28141.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
transcriptional regulator, IclR family
SCNpilot_expt_1000_bf_scaffold_96_30
Verrucosispora maris, Verrucosispora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(32716..33786)
DNA (1071bp) protein (357aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000375F9FC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEB46936.1}; TaxID=263358 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Verrucosispora.;" source="Verrucosispora maris (strain AB-18-032).;"
Displaying items 1-30 of 260 in total

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