name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
SCNpilot_expt_1000_bf_scaffold_96_1
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(62..796)
|
integral membrane sensor signal transduction histidine kinase; K10125 two-component system, NtrC family, C4-dicarboxylate transport sensor histidine kinase DctB [EC:2.7.13.3]
C4-dicarboxylate transport sensor protein DctB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D6R8_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KKB83643.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
|
|
SCNpilot_expt_1000_bf_scaffold_96_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(780..2072)
|
Phosphoglycerate transport regulatory protein PgtC n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CXY0_9RHIZ
rbh
Phosphoglycerate transport regulatory protein PgtC {ECO:0000313|EMBL:EYR78576.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
family 1 extracellular solute-binding protein
|
|
SCNpilot_expt_1000_bf_scaffold_96_3
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(2136..3260)
|
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002F5EE1C
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KKB83647.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
ABC transporter
|
|
SCNpilot_expt_1000_bf_scaffold_96_4
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(3257..4966)
|
Binding-protein-dependent transport system inner membrane component n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CHT1_9RHIZ
rbh
ABC transporter permease {ECO:0000313|EMBL:KKB83646.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
binding-protein-dependent transporters inner membrane component; K02011 iron(III) transport system permease protein
|
|
SCNpilot_expt_1000_bf_scaffold_96_5
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(5060..6373)
|
Phosphoglycerate transport regulatory protein PgtC n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EYH1_9RHIZ
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KKB83645.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
family 1 extracellular solute-binding protein
|
|
SCNpilot_expt_1000_bf_scaffold_96_6
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
6736..8931
|
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002F3CE89
CRISPR-associated protein Cas3 {ECO:0000313|EMBL:EZQ15854.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
CRISPR-associated helicase Cas3; K07012
|
|
SCNpilot_expt_1000_bf_scaffold_96_7
Rhodomicrobium vannielii, Rhodomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
9013..9681
|
CRISPR-associated protein n=1 Tax=Methylocystis parvus RepID=UPI0002FD30B5
CRISPR-associated protein Cas5 family
CRISPR-associated protein Cas5 family {ECO:0000313|EMBL:ADP70485.1}; TaxID=648757 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Rhodomicrobium.;" source="Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 /; LMG 4299).;"
|
|
SCNpilot_expt_1000_bf_scaffold_96_8
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
9678..11462
|
CRISPR-associated protein, Csd1 family n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SR92_NITWN
CRISPR-associated Csd1 family protein
CRISPR-associated protein, Csd1 family {ECO:0000313|EMBL:ABA05199.1}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
|
|
SCNpilot_expt_1000_bf_scaffold_96_9
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
11459..12412
|
CRISPR-associated protein, Csd2 family n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SR93_NITWN
rbh
CRISPR-associated Csh2 family protein
rbh
CRISPR-associated protein, Csd2 family {ECO:0000313|EMBL:ABA05198.1}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
|
|
SCNpilot_expt_1000_bf_scaffold_96_10
Phaeospirillum molischianum, Phaeospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
12423..13097
|
CRISPR-associated exonuclease, Cas4 family n=1 Tax=Phaeospirillum molischianum DSM 120 RepID=H8FNE0_PHAMO
rbh
CRISPR-associated exonuclease, Cas4 family {ECO:0000313|EMBL:CCG39878.1}; TaxID=1150626 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Phaeospirillum.;" source="Phaeospirillum molischianum DSM 120.;"
CRISPR-associated protein Cas4; K07464 putative RecB family exonuclease
|
|
SCNpilot_expt_1000_bf_scaffold_96_11 |
Not on your lists |
13094..14128
|
CRISPR-associated endonuclease Cas1 n=1 Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) RepID=E3I4H4_RHOVT
rbh
Uncharacterized protein {ECO:0000313|EMBL:KKM44002.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
CRISPR-associated protein Cas1; K15342 CRISP-associated protein Cas1
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_96_12
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
14131..14421
|
CRISPR-associated endoribonuclease Cas2 {ECO:0000256|HAMAP-Rule:MF_01471}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01471};; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
CRISPR-associated endoribonuclease Cas2 n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4QS07_9RHIZ
CRISPR-associated protein Cas2
|
|
SCNpilot_expt_1000_bf_scaffold_96_13
BJP_08E140C01_Roseovarius_63_250, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
14557..15255
|
Putative uncharacterized protein id=3591432 bin=GWB1_Spirochaetes_59_5 species=Desulfotomaculum gibsoniae genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes
Tax=BJP_08E140C01_Roseovarius_63_250
|
|
SCNpilot_expt_1000_bf_scaffold_96_14
Rhodobacter capsulatus, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
16862..17869
|
Uncharacterized protein n=1 Tax=Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003) RepID=D5ASG8_RHOCB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADE85059.1}; TaxID=272942 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003).;"
|
|
SCNpilot_expt_1000_bf_scaffold_96_15
Rhodobacter capsulatus, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
19989..21194
|
Uncharacterized protein n=1 Tax=Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003) RepID=D5ASG8_RHOCB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADE85059.1}; TaxID=272942 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003).;"
|
|
SCNpilot_expt_1000_bf_scaffold_96_16
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
21796..22182
|
hypothetical protein n=1 Tax=Rhizobium loti RepID=UPI000370E55E
Inner-membrane translocator {ECO:0000313|EMBL:CDX32877.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
inner-membrane translocator; K02057 simple sugar transport system permease protein
|
|
SCNpilot_expt_1000_bf_scaffold_96_17
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
22185..22409
|
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI0003796F21
Inner-membrane translocator {ECO:0000313|EMBL:CDX32877.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
inner-membrane translocator; K02057 simple sugar transport system permease protein
|
|
SCNpilot_expt_1000_bf_scaffold_96_18
Mesorhizobium opportunistum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
22406..23290
|
SMP-30/Gluconolaconase/LRE domain protein n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7Y415_MESOW
SMP-30/Gluconolaconase/LRE domain-containing protein
SMP-30/Gluconolaconase/LRE domain protein {ECO:0000313|EMBL:AEH84992.1}; TaxID=536019 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
|
|
SCNpilot_expt_1000_bf_scaffold_96_19
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(23354..24112)
|
Binding-protein-dependent transporter inner membrane component n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2N8L7_9RHIZ
rbh
Binding-protein-dependent transporter inner membrane component {ECO:0000313|EMBL:EKF20453.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
binding-protein-dependent transporter inner membrane component; K02050 NitT/TauT family transport system permease protein
|
|
SCNpilot_expt_1000_bf_scaffold_96_20
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(24112..24909)
|
ABC transporter-like protein n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2LRP8_9RHIZ
rbh
ABC transporter-like protein {ECO:0000313|EMBL:EKF20454.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
ABC transporter-like protein; K02049 NitT/TauT family transport system ATP-binding protein
|
|
SCNpilot_expt_1000_bf_scaffold_96_21
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(24906..25718)
|
Binding-protein-dependent transporter inner membrane component n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MIB8_9RHIZ
rbh
Binding-protein-dependent transporter inner membrane component {ECO:0000313|EMBL:EKF20455.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
binding-protein-dependent transporter inner membrane component; K02050 NitT/TauT family transport system permease protein
|
|
SCNpilot_expt_1000_bf_scaffold_96_22
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(25718..26680)
|
ABC-type nitrate/sulfonate/bicarbonate transporter periplasmic proteins-like protein n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2ME48_9RHIZ
rbh
ABC-type nitrate/sulfonate/bicarbonate transporter periplasmic proteins-like protein {ECO:0000313|EMBL:EKF20456.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
|
|
SCNpilot_expt_1000_bf_scaffold_96_23
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
26873..27550
|
GntR family transcriptional regulator n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MSU9_9RHIZ
GntR family transcriptional regulator {ECO:0000313|EMBL:EKF20457.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
GntR family transcriptional regulator
|
|
SCNpilot_expt_1000_bf_scaffold_96_24
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
27656..28069
|
hypothetical protein n=1 Tax=Rhizobium loti RepID=UPI000364C3FC
Cupin {ECO:0000313|EMBL:KFL27311.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
cupin
|
|
SCNpilot_expt_1000_bf_scaffold_96_25
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
28069..29148
|
Malate dehydrogenase {ECO:0000313|EMBL:CDP52453.1}; EC=1.1.1.37 {ECO:0000313|EMBL:CDP52453.1};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
hypothetical protein n=1 Tax=Rhizobium loti RepID=UPI00035D6B27
Malate/L-lactate dehydrogenase
|
|
SCNpilot_expt_1000_bf_scaffold_96_26
bacterium YEK0313, Bacteria
|
Not on your lists |
29145..29543
|
Endoribonuclease L-PSP n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CKI1_VARPS
2-aminomuconate deaminase {ECO:0000313|EMBL:CEJ15525.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
endoribonuclease L-PSP
|
|
SCNpilot_expt_1000_bf_scaffold_96_27
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
29548..30447
|
5-carboxymethyl-2-hydroxymuconate delta-isomerase (EC:5.3.3.10)
rbh
5-carboxymethyl-2-hydroxymuconate Delta-isomerase n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CKI0_VARPS
rbh
5-carboxymethyl-2-hydroxymuconate isomerase {ECO:0000313|EMBL:KFL27309.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
|
|
SCNpilot_expt_1000_bf_scaffold_96_28
bacterium YEK0313, Bacteria
|
Not on your lists |
30476..31456
|
amidohydrolase 2; K03392 aminocarboxymuconate-semialdehyde decarboxylase [EC:4.1.1.45]
Amidohydrolase 2 n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CKH8_VARPS
Amidohydrolase {ECO:0000313|EMBL:CEJ15529.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
|
|
SCNpilot_expt_1000_bf_scaffold_96_29
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(31783..32661)
|
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00036215A9
Transcriptional regulator, IclR family {ECO:0000313|EMBL:CDX28141.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
transcriptional regulator, IclR family
|
|
SCNpilot_expt_1000_bf_scaffold_96_30
Verrucosispora maris, Verrucosispora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria
|
Not on your lists |
comp(32716..33786)
|
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000375F9FC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEB46936.1}; TaxID=263358 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Verrucosispora.;" source="Verrucosispora maris (strain AB-18-032).;"
|